Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47330 * 2 1 4 4 H 1.09003 * 109.47016 * 54.99779 * 3 2 1 5 5 C 1.52995 * 109.47129 * 294.99936 * 3 2 1 6 6 C 1.52999 * 109.47225 * 174.99662 * 3 2 1 7 7 N 1.46494 * 109.47208 * 184.99816 * 6 3 2 8 8 C 1.46509 * 119.99939 * 90.00070 * 7 6 3 9 9 C 1.52998 * 109.47316 * 263.67753 * 8 7 6 10 10 C 1.34774 * 120.00484 * 269.72737 * 7 6 3 11 11 O 1.21588 * 119.99532 * 4.05248 * 10 7 6 12 12 N 1.34777 * 120.00606 * 184.04727 * 10 7 6 13 13 C 1.46501 * 120.00416 * 184.96972 * 12 10 7 14 14 C 1.52998 * 109.47317 * 175.06000 * 13 12 10 15 15 C 1.50708 * 115.54995 * 306.23475 * 14 13 12 16 16 H 1.07993 * 120.00099 * 144.22944 * 15 14 13 17 17 C 1.37877 * 119.99662 * 324.22774 * 15 14 13 18 18 N 1.31513 * 120.00356 * 3.18523 * 17 15 14 19 19 Si 1.86801 * 119.99908 * 183.18822 * 17 15 14 20 20 H 1.48506 * 109.46884 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47233 * 119.99754 * 19 17 15 22 22 H 1.48500 * 109.47392 * 239.99852 * 19 17 15 23 23 C 1.52996 * 117.49889 * 160.56170 * 14 13 12 24 24 C 1.52999 * 117.49922 * 91.90028 * 14 13 12 25 25 H 1.09004 * 109.46798 * 59.99812 * 1 2 3 26 26 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47039 * 300.00169 * 1 2 3 28 28 H 1.09001 * 109.47500 * 239.99615 * 2 1 3 29 29 H 1.08998 * 109.47105 * 119.99845 * 2 1 3 30 30 H 1.09000 * 109.47244 * 60.00060 * 5 3 2 31 31 H 1.09004 * 109.47524 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47043 * 299.99826 * 5 3 2 33 33 H 1.09006 * 109.46926 * 65.00281 * 6 3 2 34 34 H 1.09000 * 109.47140 * 305.00199 * 6 3 2 35 35 H 1.09001 * 109.46746 * 23.67973 * 8 7 6 36 36 H 1.09005 * 109.46727 * 143.67511 * 8 7 6 37 37 H 1.09000 * 109.46664 * 299.99971 * 9 8 7 38 38 H 1.08998 * 109.47354 * 59.99495 * 9 8 7 39 39 H 1.08993 * 109.47134 * 180.02562 * 9 8 7 40 40 H 0.97000 * 119.99556 * 4.97491 * 12 10 7 41 41 H 1.08998 * 109.47224 * 295.06624 * 13 12 10 42 42 H 1.09008 * 109.46424 * 55.06044 * 13 12 10 43 43 H 0.97003 * 120.00340 * 185.00524 * 18 17 15 44 44 H 1.08997 * 117.50176 * 0.02562 * 23 14 13 45 45 H 1.09003 * 117.49582 * 145.02269 * 23 14 13 46 46 H 1.08993 * 117.49711 * 214.98093 * 24 14 13 47 47 H 1.08999 * 117.49435 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 7 4.0433 2.8237 0.2458 8 6 4.1785 3.4397 1.5682 9 6 2.9271 4.2638 1.8774 10 6 4.3644 3.5243 -0.8598 11 8 4.1875 3.0382 -1.9602 12 7 4.8814 4.7637 -0.7459 13 6 5.1288 5.5674 -1.9455 14 6 5.5968 6.9652 -1.5355 15 6 4.6973 7.6949 -0.5713 16 1 5.1242 8.3336 0.1876 17 6 3.3292 7.5471 -0.6583 18 7 2.8118 6.7213 -1.5414 19 14 2.2105 8.5199 0.4782 20 1 3.0342 9.3725 1.3727 21 1 1.3088 9.3787 -0.3309 22 1 1.3993 7.5826 1.2958 23 6 6.3325 7.8001 -2.5854 24 6 7.1038 7.1968 -1.4089 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.5490 2.1253 -1.3969 31 1 1.9983 3.1543 -1.3072 32 1 2.0700 1.5874 -2.1491 33 1 4.0030 0.9835 -0.7596 34 1 3.8570 0.8800 1.0114 35 1 4.2959 2.6607 2.3216 36 1 5.0534 4.0898 1.5784 37 1 2.8098 5.0427 1.1240 38 1 2.0522 3.6137 1.8670 39 1 3.0279 4.7224 2.8610 40 1 5.0898 5.1236 0.1305 41 1 5.8991 5.0893 -2.5507 42 1 4.2091 5.6476 -2.5251 43 1 1.8495 6.6708 -1.6528 44 1 6.4828 7.3539 -3.5684 45 1 6.1662 8.8774 -2.5785 46 1 7.4446 7.8773 -0.6286 47 1 7.7619 6.3532 -1.6173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431199843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -17.516820 kcal Electronic energy + Delta-G solvation = -24339.531064 eV Core-core repulsion = 21136.937363 eV Total energy + Delta-G solvation = -3202.593701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60576 -37.09365 -36.18810 -34.80049 -32.81679 -32.11686 -30.50716 -29.06502 -26.72601 -25.68397 -24.91045 -23.13155 -22.61662 -21.20775 -19.75694 -19.21189 -18.77272 -17.48873 -16.12878 -15.62336 -15.26084 -14.83045 -14.74081 -14.00906 -13.78618 -13.55089 -13.39479 -13.26466 -12.95823 -12.62031 -12.48747 -12.30578 -11.80380 -11.72764 -11.56885 -11.39330 -11.28513 -11.13855 -11.02241 -10.79628 -10.66280 -10.58380 -10.49761 -10.30999 -10.20026 -10.14125 -9.65356 -9.11278 -8.90001 -8.79237 -8.25662 -8.12742 -7.54073 -5.96378 -4.15670 3.19753 3.30843 3.32831 3.43114 4.21287 4.30897 4.77606 5.01405 5.03050 5.11739 5.19701 5.29633 5.43149 5.51697 5.57390 5.66797 5.72096 5.79860 5.87762 5.93272 6.03399 6.06943 6.08701 6.18710 6.23149 6.30519 6.32608 6.35813 6.48093 6.58879 6.65258 6.70591 6.75072 6.79973 6.92635 7.03518 7.06271 7.22487 7.29514 7.61149 7.76105 7.89812 8.04909 8.35733 8.81291 9.06798 9.47148 9.64486 10.92647 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.006018 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.725172 B = 4651.849968 C = 5334.938555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.108 4.108 4 H 0.066 0.934 5 C -0.134 4.134 6 C 0.144 3.856 7 N -0.637 5.637 8 C 0.116 3.884 9 C -0.176 4.176 10 C 0.706 3.294 11 O -0.602 6.602 12 N -0.701 5.701 13 C 0.184 3.816 14 C 0.038 3.962 15 C -0.494 4.494 16 H 0.059 0.941 17 C 0.078 3.922 18 N -0.860 5.860 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.392 0.608 41 H 0.013 0.987 42 H 0.112 0.888 43 H 0.260 0.740 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -9.726 6.468 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.128 4.128 4 H 0.085 0.915 5 C -0.192 4.192 6 C 0.019 3.981 7 N -0.375 5.375 8 C -0.008 4.008 9 C -0.235 4.235 10 C 0.408 3.592 11 O -0.482 6.482 12 N -0.353 5.353 13 C 0.060 3.940 14 C 0.037 3.963 15 C -0.532 4.532 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.496 5.496 19 Si 0.712 3.288 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.237 4.237 24 C -0.251 4.251 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.227 0.773 41 H 0.031 0.969 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.218 -10.155 5.609 11.665 hybrid contribution -0.600 0.943 1.070 1.547 sum -1.818 -9.212 6.678 11.523 Atomic orbital electron populations 1.21792 0.96124 1.00937 1.01994 1.21511 0.95809 0.96640 1.01480 1.21641 0.96094 0.95501 0.99515 0.91549 1.21788 0.98983 1.02365 0.96031 1.21240 0.93272 0.81925 1.01613 1.47112 1.70968 1.14171 1.05252 1.21339 0.98174 0.96814 0.84502 1.22307 0.97967 1.01085 1.02133 1.15821 0.78299 0.81564 0.83553 1.90819 1.61829 1.70705 1.24878 1.44908 1.65744 1.13558 1.11050 1.20884 1.00666 0.86897 0.85510 1.19262 0.87855 0.92828 0.96378 1.20497 0.90207 1.27458 1.15022 0.92287 1.24940 0.97968 0.94254 0.95457 1.69913 1.11777 1.33999 1.33888 0.86665 0.80965 0.80174 0.80978 1.19830 1.21005 1.20845 1.22925 1.08527 0.99360 0.92917 1.22947 0.97971 1.02682 1.01460 0.92354 0.93276 0.93071 0.92016 0.92520 0.94368 0.91242 0.92700 0.90402 0.91857 0.91222 0.91222 0.90624 0.92864 0.92433 0.77333 0.96931 0.87083 0.92916 0.91517 0.90310 0.90762 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 37.16 0.36 -1.27 16 2 C -0.12 -1.33 5.40 -26.73 -0.14 -1.48 16 3 C -0.11 -1.52 2.59 -90.62 -0.24 -1.76 16 4 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 5 C -0.13 -2.33 7.64 37.15 0.28 -2.04 16 6 C 0.14 2.10 5.03 -4.05 -0.02 2.08 16 7 N -0.64 -10.79 2.37 -179.42 -0.43 -11.22 16 8 C 0.12 1.66 5.93 -4.04 -0.02 1.64 16 9 C -0.18 -2.73 10.19 37.16 0.38 -2.35 16 10 C 0.71 14.98 6.94 -86.92 -0.60 14.37 16 11 O -0.60 -14.59 13.87 5.29 0.07 -14.51 16 12 N -0.70 -15.21 4.94 -65.22 -0.32 -15.53 16 13 C 0.18 4.40 4.61 -4.04 -0.02 4.38 16 14 C 0.04 0.88 2.03 -155.66 -0.32 0.56 16 15 C -0.49 -12.37 8.41 -34.44 -0.29 -12.66 16 16 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.08 1.97 5.30 -17.82 -0.09 1.87 16 18 N -0.86 -22.44 10.19 55.43 0.56 -21.88 16 19 Si 0.88 19.85 29.54 -169.99 -5.02 14.83 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 24 C -0.21 -4.45 9.92 -26.69 -0.26 -4.72 16 25 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 31 H 0.07 1.49 6.00 -51.93 -0.31 1.18 16 32 H 0.05 1.00 7.95 -51.93 -0.41 0.58 16 33 H 0.08 1.26 7.47 -51.93 -0.39 0.87 16 34 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 36 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.05 0.79 6.55 -51.93 -0.34 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.39 8.14 5.87 -40.82 -0.24 7.90 16 41 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.11 3.03 5.96 -51.92 -0.31 2.72 16 43 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 46 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -27.35 363.13 -9.28 -36.63 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -8.37 Total: 12.19 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.26 Total: -5.98 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.18 Total: -48.62 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.51 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.35 -9.28 -36.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431199843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.112 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds