Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 6 6 C 1.34773 * 120.00431 * 85.00044 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46983 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99624 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99634 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00657 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99703 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47214 * 90.00059 * 16 14 12 18 18 H 1.48501 * 109.47474 * 210.00166 * 16 14 12 19 19 H 1.48500 * 109.47089 * 330.00544 * 16 14 12 20 20 C 1.52998 * 109.47309 * 174.99986 * 3 2 1 21 21 C 1.54265 * 110.03291 * 297.16710 * 20 3 2 22 22 C 1.54891 * 104.19857 * 217.10349 * 21 20 3 23 23 C 1.54890 * 102.74773 * 37.94350 * 22 21 20 24 24 C 1.53878 * 110.03344 * 180.02562 * 20 3 2 25 25 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08991 * 109.47261 * 59.99576 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 30 30 H 0.97000 * 119.99456 * 264.99607 * 5 3 2 31 31 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 32 32 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 33 33 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 34 34 H 1.09007 * 109.46621 * 299.99773 * 10 9 8 35 35 H 1.08997 * 109.46991 * 59.99522 * 10 9 8 36 36 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 37 37 H 1.08997 * 109.47123 * 59.99717 * 11 10 9 38 38 H 0.96990 * 120.00229 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.01570 * 58.60631 * 20 3 2 40 40 H 1.09003 * 110.48882 * 335.78507 * 21 20 3 41 41 H 1.09004 * 110.48683 * 98.42645 * 21 20 3 42 42 H 1.08999 * 110.75480 * 279.63090 * 22 21 20 43 43 H 1.08998 * 110.75771 * 156.25804 * 22 21 20 44 44 H 1.08999 * 110.49106 * 203.38168 * 23 22 21 45 45 H 1.09000 * 110.59880 * 80.78959 * 23 22 21 46 46 H 1.09000 * 110.02806 * 238.57195 * 24 20 3 47 47 H 1.08999 * 110.03301 * 359.94674 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3416 2.6318 -0.4319 8 7 0.0806 3.2718 -2.5166 9 6 -1.2403 3.8933 -2.6397 10 6 -1.3871 4.5075 -4.0333 11 6 -2.7669 5.1561 -4.1620 12 6 -2.9112 5.7616 -5.5344 13 1 -2.0998 5.6913 -6.2437 14 6 -4.0791 6.4053 -5.8844 15 7 -5.0670 6.4914 -5.0206 16 14 -4.2583 7.1553 -7.5859 17 1 -4.8286 6.1461 -8.5142 18 1 -5.1632 8.3307 -7.5160 19 1 -2.9257 7.5853 -8.0802 20 6 3.5648 1.4443 0.1257 21 6 3.9848 0.8210 1.4729 22 6 5.2067 1.6631 1.9167 23 6 4.8137 3.0947 1.4750 24 6 4.0918 2.8900 0.1277 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2719 2.1231 -1.9977 31 1 0.7001 3.2975 -3.2626 32 1 -2.0123 3.1382 -2.4919 33 1 -1.3463 4.6736 -1.8860 34 1 -0.6150 5.2628 -4.1806 35 1 -1.2809 3.7275 -4.7871 36 1 -3.5386 4.4005 -4.0148 37 1 -2.8735 5.9360 -3.4081 38 1 -5.8887 6.9440 -5.2670 39 1 4.0078 0.8861 -0.6990 40 1 3.1779 0.9064 2.2008 41 1 4.2693 -0.2226 1.3382 42 1 6.1097 1.3343 1.4023 43 1 5.3372 1.6145 2.9977 44 1 5.7031 3.7105 1.3418 45 1 4.1414 3.5495 2.2025 46 1 4.7912 3.0335 -0.6959 47 1 3.2613 3.5903 0.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454453431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = -74.252719 kcal Electronic energy + Delta-G solvation = -22377.765019 eV Core-core repulsion = 19172.711065 eV Total energy + Delta-G solvation = -3205.053955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29576 -38.60994 -35.80985 -34.80657 -33.36130 -32.32257 -30.87705 -29.58549 -28.91137 -26.62674 -24.88550 -23.08398 -21.68152 -20.83240 -20.67207 -20.24173 -19.97904 -17.88714 -16.80698 -16.29222 -15.76214 -15.62492 -15.29425 -14.69689 -14.43529 -14.22061 -13.90320 -13.67609 -13.56324 -13.25477 -12.65083 -12.26942 -12.15889 -11.78994 -11.72533 -11.65956 -11.41813 -11.36364 -11.21009 -10.99505 -10.96099 -10.89437 -10.76519 -10.68935 -10.58052 -10.53874 -9.95506 -9.83209 -9.41076 -9.10774 -8.99875 -8.53542 -8.35881 -6.00500 -4.03552 2.89192 3.31447 3.37793 3.40605 3.45835 4.22273 4.29132 4.34404 4.44753 4.54133 4.81450 5.01387 5.07407 5.15444 5.24336 5.29509 5.35190 5.35889 5.43157 5.45594 5.55573 5.63288 5.69322 5.75803 5.82599 5.84773 5.87813 5.92111 6.00322 6.04441 6.11115 6.19525 6.22407 6.49120 6.60371 6.63036 6.65587 6.86410 7.05842 7.16004 7.65553 7.78740 7.98638 8.23949 8.39649 8.85344 9.03246 9.60512 11.10818 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031433 B = 0.002604 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.581427 B =10748.665048 C =11240.713670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.171 3.829 4 H 0.088 0.912 5 N -0.746 5.746 6 C 0.700 3.300 7 O -0.588 6.588 8 N -0.744 5.744 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.099 4.099 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.122 4.122 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.591 -12.363 11.693 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.066 3.934 4 H 0.106 0.894 5 N -0.401 5.401 6 C 0.400 3.600 7 O -0.466 6.466 8 N -0.398 5.398 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.118 4.118 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.641 -12.296 12.587 27.124 hybrid contribution 0.360 0.457 -1.751 1.845 sum 21.002 -11.840 10.836 26.432 Atomic orbital electron populations 1.21782 0.94656 1.00114 1.03554 1.21999 0.97321 0.96283 1.01683 1.20959 0.92831 0.92825 0.86832 0.89430 1.45198 1.16080 1.61798 1.17024 1.15992 0.82023 0.78430 0.83579 1.90924 1.51769 1.65010 1.38893 1.45411 1.19424 1.60438 1.14562 1.21473 0.81516 0.96546 0.99164 1.21883 1.01844 0.99206 0.92869 1.19025 0.89602 0.95611 0.97134 1.21206 1.00268 1.35533 0.98997 0.92682 1.25031 0.95977 0.96287 0.97199 1.69964 1.05201 1.43410 1.34710 0.86586 0.77965 0.78822 0.84558 1.20671 1.21210 1.19917 1.22070 0.94327 0.96769 0.98678 1.22390 0.97948 0.98978 0.96033 1.22500 0.97864 0.95263 1.00649 1.22354 0.99940 0.96872 0.97156 1.22204 1.00043 0.96166 0.97549 0.94092 0.92245 0.92061 0.92287 0.91417 0.77502 0.77486 0.92075 0.92071 0.92836 0.92848 0.96272 0.96265 0.92933 0.90675 0.91074 0.91465 0.91603 0.91618 0.91864 0.91604 0.91919 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.51 37.16 0.32 -1.49 16 2 C -0.13 -1.30 5.49 -26.73 -0.15 -1.44 16 3 C 0.17 1.67 1.49 -67.93 -0.10 1.57 16 4 H 0.09 1.08 7.55 -51.92 -0.39 0.68 16 5 N -0.75 -7.93 4.39 -58.68 -0.26 -8.19 16 6 C 0.70 10.41 7.13 -86.92 -0.62 9.79 16 7 O -0.59 -11.00 13.48 5.28 0.07 -10.93 16 8 N -0.74 -10.78 5.56 -65.22 -0.36 -11.15 16 9 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.10 -0.72 2.56 -89.50 -0.23 -0.95 16 21 C -0.12 -0.76 5.23 -25.07 -0.13 -0.89 16 22 C -0.13 -0.78 6.91 -24.74 -0.17 -0.95 16 23 C -0.13 -0.89 6.83 -25.10 -0.17 -1.06 16 24 C -0.12 -0.94 6.19 -25.64 -0.16 -1.09 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 27 H 0.06 0.93 5.64 -51.93 -0.29 0.63 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 30 H 0.39 3.18 8.62 -40.82 -0.35 2.83 16 31 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 7.77 -51.93 -0.40 0.10 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.67 7.37 -51.93 -0.38 0.29 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -31.95 367.00 -10.26 -42.21 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.83 Total: 1.79 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.13 Total: -9.58 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.12 Total: -45.59 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.95 -10.26 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454453431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.044 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds