Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08995 * 110.01140 * 54.30299 * 3 2 1 5 5 C 1.54260 * 110.03498 * 292.91190 * 3 2 1 6 6 C 1.54967 * 104.16159 * 217.13831 * 5 3 2 7 7 C 1.54891 * 102.77535 * 37.88462 * 6 5 3 8 8 C 1.53873 * 110.03233 * 175.69085 * 3 2 1 9 9 H 1.08999 * 110.03067 * 238.57194 * 8 3 2 10 10 C 1.53001 * 110.03256 * 0.02562 * 8 3 2 11 11 N 1.46500 * 109.46970 * 184.99875 * 10 8 3 12 12 C 1.34779 * 119.99728 * 180.02562 * 11 10 8 13 13 O 1.21585 * 119.99943 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99697 * 180.02562 * 12 11 10 15 15 C 1.46508 * 119.99988 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47222 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47137 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99604 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99414 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00367 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46919 * 90.00130 * 22 20 18 24 24 H 1.48496 * 109.47085 * 210.00150 * 22 20 18 25 25 H 1.48498 * 109.46905 * 330.00330 * 22 20 18 26 26 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 30 30 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 31 31 H 1.09004 * 110.48549 * 335.78144 * 5 3 2 32 32 H 1.08998 * 110.48823 * 98.42122 * 5 3 2 33 33 H 1.09000 * 110.71390 * 279.56763 * 6 5 3 34 34 H 1.09004 * 110.76509 * 156.22391 * 6 5 3 35 35 H 1.09002 * 110.48285 * 203.40826 * 7 6 5 36 36 H 1.08994 * 110.59649 * 80.82232 * 7 6 5 37 37 H 1.09000 * 109.46997 * 305.00177 * 10 8 3 38 38 H 1.09003 * 109.47014 * 64.99487 * 10 8 3 39 39 H 0.96999 * 119.99969 * 0.02562 * 11 10 8 40 40 H 0.97001 * 120.00756 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.46587 * 299.99839 * 15 14 12 42 42 H 1.09000 * 109.46940 * 59.99084 * 15 14 12 43 43 H 1.09001 * 109.47413 * 299.99584 * 16 15 14 44 44 H 1.09004 * 109.47014 * 59.99635 * 16 15 14 45 45 H 1.09004 * 109.47001 * 299.99686 * 17 16 15 46 46 H 1.08996 * 109.47407 * 59.99571 * 17 16 15 47 47 H 0.97000 * 120.00197 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6009 1.9934 0.8317 5 6 1.6842 2.1289 -1.3349 6 6 2.9103 3.0268 -1.6382 7 6 4.0993 2.1543 -1.1647 8 6 3.5748 1.4590 0.1086 9 1 3.8805 2.0186 0.9926 10 6 4.1104 0.0277 0.1820 11 7 5.5580 0.0588 0.4047 12 6 6.2496 -1.0938 0.5033 13 8 5.6720 -2.1594 0.4069 14 7 7.5812 -1.0652 0.7087 15 6 8.3331 -2.3181 0.8153 16 6 9.8133 -2.0067 1.0451 17 6 10.5984 -3.3151 1.1570 18 6 12.0563 -3.0083 1.3840 19 1 12.3896 -1.9828 1.4421 20 6 12.9647 -4.0371 1.5164 21 7 14.2369 -3.7693 1.7149 22 14 12.3883 -5.8110 1.4151 23 1 12.4484 -6.2712 0.0044 24 1 13.2676 -6.6658 2.2525 25 1 10.9906 -5.9062 1.9077 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5513 1.3866 -2.1220 32 1 0.7847 2.7345 -1.2247 33 1 2.8599 3.9539 -1.0672 34 1 2.9836 3.2330 -2.7060 35 1 4.9614 2.7789 -0.9307 36 1 4.3590 1.4159 -1.9231 37 1 3.6273 -0.4993 1.0048 38 1 3.8978 -0.4883 -0.7544 39 1 6.0188 0.9089 0.4813 40 1 8.0421 -0.2151 0.7853 41 1 7.9499 -2.9016 1.6525 42 1 8.2210 -2.8887 -0.1066 43 1 10.1962 -1.4234 0.2076 44 1 9.9256 -1.4359 1.9669 45 1 10.2155 -3.8981 1.9947 46 1 10.4860 -3.8863 0.2355 47 1 14.8761 -4.4930 1.8077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454459102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = -71.778561 kcal Electronic energy + Delta-G solvation = -21891.085651 eV Core-core repulsion = 18686.138983 eV Total energy + Delta-G solvation = -3204.946667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20379 -39.14894 -35.63583 -34.51737 -33.45924 -33.25591 -31.49259 -30.03359 -27.92588 -27.09210 -24.70930 -23.22998 -22.63572 -21.08678 -20.82181 -20.23238 -19.22039 -17.90093 -16.83167 -16.59735 -15.91982 -15.57447 -15.23431 -14.87796 -14.55724 -14.41729 -14.10672 -13.87337 -13.68885 -13.51381 -12.79465 -12.67983 -12.58957 -12.30397 -11.96157 -11.87332 -11.64494 -11.39209 -11.18309 -11.05019 -11.03300 -10.97495 -10.87349 -10.67329 -10.59646 -10.24394 -9.98076 -9.79929 -9.65618 -9.21125 -9.16445 -8.61214 -8.54057 -6.05070 -4.03606 2.83305 3.32819 3.37238 3.40236 3.45122 4.12664 4.16250 4.24521 4.45459 4.46020 4.73665 4.86390 4.90749 4.97332 5.10542 5.13182 5.21815 5.27449 5.29180 5.37443 5.44025 5.52371 5.54541 5.60365 5.67015 5.72461 5.73419 5.74836 5.80167 5.84796 5.99810 6.03403 6.06913 6.11563 6.41764 6.48591 6.49765 6.72990 6.85694 7.04926 7.25701 7.38949 7.77356 8.14995 8.51623 8.75177 8.98812 9.57318 11.08158 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.002372 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.338133 B =11799.560050 C =12351.599231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.074 0.926 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.121 4.121 8 C -0.102 4.102 9 H 0.078 0.922 10 C 0.144 3.856 11 N -0.751 5.751 12 C 0.700 3.300 13 O -0.595 6.595 14 N -0.743 5.743 15 C 0.133 3.867 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.521 4.521 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.395 0.605 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.019 0.981 46 H 0.015 0.985 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.957 14.863 -4.922 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.101 4.101 4 H 0.092 0.908 5 C -0.157 4.157 6 C -0.163 4.163 7 C -0.159 4.159 8 C -0.121 4.121 9 H 0.096 0.904 10 C 0.020 3.980 11 N -0.408 5.408 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.397 5.397 15 C 0.010 3.990 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.188 1.188 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.227 0.773 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.318 13.747 -4.977 30.984 hybrid contribution 0.369 -0.121 0.060 0.393 sum -26.949 13.625 -4.917 30.596 Atomic orbital electron populations 1.21796 0.95957 1.01612 1.01613 1.21819 0.95829 0.96052 1.02794 1.21756 0.93647 0.96464 0.98237 0.90760 1.22475 0.97784 0.98503 0.96894 1.22502 0.94805 0.98137 1.00902 1.22472 0.97801 0.98731 0.96863 1.22066 0.95525 0.95419 0.99055 0.90373 1.21491 0.78726 0.96028 1.01775 1.45180 1.08797 1.07270 1.79530 1.16018 0.81847 0.84151 0.78064 1.90909 1.69185 1.29027 1.58265 1.45333 1.06025 1.10582 1.77763 1.21499 0.91798 0.84192 1.01547 1.21702 0.91000 1.00960 1.01401 1.19505 0.96022 0.92752 0.96646 1.21100 0.90144 0.95110 1.49572 0.91029 1.25033 0.94769 0.99241 0.94503 1.69912 1.01844 1.32545 1.49943 0.86770 0.79216 0.84936 0.78353 1.20251 1.21395 1.18848 0.92769 0.92792 0.92924 0.91404 0.91224 0.91377 0.91767 0.91574 0.91598 0.91638 0.91150 0.91392 0.91543 0.77340 0.77223 0.92028 0.92046 0.92186 0.92161 0.96282 0.96717 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.76 37.16 0.36 -0.58 16 2 C -0.13 -0.89 4.11 -26.73 -0.11 -1.00 16 3 C -0.08 -0.51 2.93 -89.50 -0.26 -0.77 16 4 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 5 C -0.12 -0.69 5.50 -25.03 -0.14 -0.83 16 6 C -0.13 -0.72 6.91 -24.70 -0.17 -0.89 16 7 C -0.12 -0.78 6.08 -25.07 -0.15 -0.93 16 8 C -0.10 -0.69 2.96 -89.50 -0.27 -0.95 16 9 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 10 C 0.14 1.38 3.78 -4.04 -0.02 1.36 16 11 N -0.75 -7.98 5.41 -65.22 -0.35 -8.33 16 12 C 0.70 10.55 8.57 -86.92 -0.74 9.81 16 13 O -0.60 -11.57 16.34 5.29 0.09 -11.49 16 14 N -0.74 -10.54 5.56 -65.22 -0.36 -10.90 16 15 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 16 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 17 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 18 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 22 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.05 0.31 7.48 -51.93 -0.39 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.52 7.02 -51.93 -0.36 0.16 16 30 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 31 H 0.07 0.42 7.77 -51.93 -0.40 0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.53 7.76 -51.93 -0.40 0.13 16 37 H 0.07 0.72 6.31 -51.93 -0.33 0.40 16 38 H 0.07 0.72 7.02 -51.93 -0.36 0.35 16 39 H 0.39 3.10 8.37 -40.82 -0.34 2.75 16 40 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -33.22 365.56 -9.91 -43.14 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.70 Total: 0.40 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.20 Total: -8.46 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.06 Total: -46.34 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.22 -9.91 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.643 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds