Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08995 * 110.01140 * 54.30299 * 3 2 1 5 5 C 1.54260 * 110.03498 * 292.91190 * 3 2 1 6 6 C 1.54967 * 104.16159 * 217.13831 * 5 3 2 7 7 C 1.54891 * 102.77535 * 37.88462 * 6 5 3 8 8 C 1.53873 * 110.03233 * 175.69085 * 3 2 1 9 9 H 1.08999 * 110.03067 * 238.57194 * 8 3 2 10 10 C 1.53001 * 110.03256 * 0.02562 * 8 3 2 11 11 N 1.46500 * 109.46970 * 184.99875 * 10 8 3 12 12 C 1.34779 * 119.99728 * 180.02562 * 11 10 8 13 13 O 1.21585 * 119.99943 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99697 * 180.02562 * 12 11 10 15 15 C 1.46508 * 119.99988 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47222 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47143 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47137 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99604 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99414 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00367 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46919 * 90.00130 * 22 20 18 24 24 H 1.48496 * 109.47085 * 210.00150 * 22 20 18 25 25 H 1.48498 * 109.46905 * 330.00330 * 22 20 18 26 26 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 30 30 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 31 31 H 1.09004 * 110.48549 * 335.78144 * 5 3 2 32 32 H 1.08998 * 110.48823 * 98.42122 * 5 3 2 33 33 H 1.09000 * 110.71390 * 279.56763 * 6 5 3 34 34 H 1.09004 * 110.76509 * 156.22391 * 6 5 3 35 35 H 1.09002 * 110.48285 * 203.40826 * 7 6 5 36 36 H 1.08994 * 110.59649 * 80.82232 * 7 6 5 37 37 H 1.09000 * 109.46997 * 305.00177 * 10 8 3 38 38 H 1.09003 * 109.47014 * 64.99487 * 10 8 3 39 39 H 0.96999 * 119.99969 * 0.02562 * 11 10 8 40 40 H 0.97001 * 120.00756 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.46587 * 299.99839 * 15 14 12 42 42 H 1.09000 * 109.46940 * 59.99084 * 15 14 12 43 43 H 1.09001 * 109.47413 * 299.99584 * 16 15 14 44 44 H 1.09004 * 109.47014 * 59.99635 * 16 15 14 45 45 H 1.09004 * 109.47001 * 299.99686 * 17 16 15 46 46 H 1.08996 * 109.47407 * 59.99571 * 17 16 15 47 47 H 0.97000 * 120.00197 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6009 1.9934 0.8317 5 6 1.6842 2.1289 -1.3349 6 6 2.9103 3.0268 -1.6382 7 6 4.0993 2.1543 -1.1647 8 6 3.5748 1.4590 0.1086 9 1 3.8805 2.0186 0.9926 10 6 4.1104 0.0277 0.1820 11 7 5.5580 0.0588 0.4047 12 6 6.2496 -1.0938 0.5033 13 8 5.6720 -2.1594 0.4069 14 7 7.5812 -1.0652 0.7087 15 6 8.3331 -2.3181 0.8153 16 6 9.8133 -2.0067 1.0451 17 6 10.5984 -3.3151 1.1570 18 6 12.0563 -3.0083 1.3840 19 1 12.3896 -1.9828 1.4421 20 6 12.9647 -4.0371 1.5164 21 7 14.2369 -3.7693 1.7149 22 14 12.3883 -5.8110 1.4151 23 1 12.4484 -6.2712 0.0044 24 1 13.2676 -6.6658 2.2525 25 1 10.9906 -5.9062 1.9077 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5513 1.3866 -2.1220 32 1 0.7847 2.7345 -1.2247 33 1 2.8599 3.9539 -1.0672 34 1 2.9836 3.2330 -2.7060 35 1 4.9614 2.7789 -0.9307 36 1 4.3590 1.4159 -1.9231 37 1 3.6273 -0.4993 1.0048 38 1 3.8978 -0.4883 -0.7544 39 1 6.0188 0.9089 0.4813 40 1 8.0421 -0.2151 0.7853 41 1 7.9499 -2.9016 1.6525 42 1 8.2210 -2.8887 -0.1066 43 1 10.1962 -1.4234 0.2076 44 1 9.9256 -1.4359 1.9669 45 1 10.2155 -3.8981 1.9947 46 1 10.4860 -3.8863 0.2355 47 1 14.8761 -4.4930 1.8077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454459102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = -93.261255 kcal Electronic energy + Delta-G solvation = -21892.017210 eV Core-core repulsion = 18686.138983 eV Total energy + Delta-G solvation = -3205.878227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18414 -39.94005 -37.06874 -35.56646 -35.11958 -33.98113 -33.25979 -30.90131 -28.75993 -28.41075 -25.67514 -24.28239 -23.71399 -22.24196 -21.76695 -21.49327 -19.97549 -19.09989 -18.71572 -17.47678 -16.97137 -16.67463 -16.27203 -15.89178 -15.78167 -15.45989 -15.12053 -15.09370 -14.74669 -14.69761 -14.08253 -13.80074 -13.69078 -13.33562 -13.20783 -12.84217 -12.72168 -12.68288 -12.16222 -11.93083 -11.84354 -11.77996 -11.74190 -11.62692 -11.58288 -11.45716 -11.32377 -11.24178 -11.21321 -11.15432 -10.75522 -10.33468 -9.70820 -8.28812 -6.32463 1.37498 1.39128 1.51166 1.75477 2.16772 2.37042 3.06924 3.33917 3.59035 3.66985 3.75781 4.11607 4.18099 4.23141 4.32285 4.41156 4.44016 4.48537 4.52425 4.54135 4.71408 4.77848 4.85442 4.87063 4.90680 4.91711 4.95931 5.04053 5.05239 5.10979 5.21136 5.26910 5.28698 5.32849 5.42527 5.46537 5.50130 5.54043 5.57308 5.58016 5.60608 5.66083 6.03989 6.28253 6.75396 7.13108 7.32278 7.60229 8.87500 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.002372 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.338133 B =11799.560050 C =12351.599231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.079 4.079 4 H 0.083 0.917 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.093 4.093 9 H 0.090 0.910 10 C 0.146 3.854 11 N -0.732 5.732 12 C 0.696 3.304 13 O -0.641 6.641 14 N -0.733 5.733 15 C 0.147 3.853 16 C -0.098 4.098 17 C -0.013 4.013 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.004 3.996 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.248 1.248 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.721 15.690 -5.083 33.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.098 4.098 4 H 0.102 0.898 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.159 4.159 8 C -0.112 4.112 9 H 0.108 0.892 10 C 0.022 3.978 11 N -0.388 5.388 12 C 0.395 3.605 13 O -0.523 6.523 14 N -0.389 5.389 15 C 0.022 3.978 16 C -0.136 4.136 17 C -0.051 4.051 18 C -0.567 4.567 19 H 0.057 0.943 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.172 1.172 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.246 0.754 40 H 0.247 0.753 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -29.094 14.649 -5.141 32.977 hybrid contribution 0.928 -0.286 0.106 0.977 sum -28.166 14.363 -5.035 32.015 Atomic orbital electron populations 1.21778 0.95201 1.01572 1.02215 1.21786 0.96525 0.96504 1.01654 1.21755 0.93138 0.95941 0.98966 0.89829 1.22465 0.98343 0.98446 0.96263 1.22499 0.94154 0.98229 1.01203 1.22465 0.98589 0.98625 0.96171 1.22028 0.95841 0.93443 0.99853 0.89166 1.21543 0.77859 0.97848 1.00569 1.45039 1.09137 1.06755 1.77903 1.16190 0.81891 0.84533 0.77840 1.90881 1.70081 1.31044 1.60320 1.45047 1.05834 1.10450 1.77546 1.21129 0.90691 0.85176 1.00806 1.21467 0.91572 0.98662 1.01926 1.19472 0.93645 0.95229 0.96721 1.21460 0.92770 0.93707 1.48810 0.94350 1.25986 0.94785 1.04246 0.94295 1.70055 1.03286 1.34137 1.51592 0.85699 0.79416 0.78978 0.78830 1.19260 1.21020 1.17170 0.92137 0.93213 0.92293 0.92606 0.92331 0.92046 0.90789 0.90669 0.91400 0.90621 0.92517 0.92471 0.93002 0.75368 0.75309 0.92870 0.92833 0.91675 0.91687 0.96109 0.96221 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.76 71.98 0.70 -1.01 16 2 C -0.13 -1.71 4.11 30.60 0.13 -1.59 16 3 C -0.08 -0.86 2.93 -10.07 -0.03 -0.89 16 4 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 5 C -0.12 -1.14 5.50 31.69 0.17 -0.97 16 6 C -0.12 -1.14 6.91 31.91 0.22 -0.92 16 7 C -0.12 -1.32 6.08 31.67 0.19 -1.13 16 8 C -0.09 -1.09 2.96 -10.07 -0.03 -1.12 16 9 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 10 C 0.15 2.67 3.78 86.38 0.33 3.00 16 11 N -0.73 -14.46 5.41 -478.53 -2.59 -17.05 16 12 C 0.70 20.24 8.57 179.06 1.53 21.78 16 13 O -0.64 -24.81 16.34 -3.98 -0.07 -24.88 16 14 N -0.73 -19.59 5.56 -478.53 -2.66 -22.26 16 15 C 0.15 4.82 5.67 86.38 0.49 5.31 16 16 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 17 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 18 C -0.53 -30.19 9.66 25.60 0.25 -29.94 16 19 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 20 C 0.00 0.22 5.47 84.66 0.46 0.68 16 21 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 22 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 26 H 0.06 0.61 7.48 -2.38 -0.02 0.59 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.88 7.02 -2.39 -0.02 0.86 16 30 H 0.06 0.91 6.34 -2.39 -0.02 0.90 16 31 H 0.06 0.69 7.77 -2.38 -0.02 0.67 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.79 7.76 -2.39 -0.02 0.77 16 37 H 0.06 1.20 6.31 -2.39 -0.02 1.19 16 38 H 0.05 1.13 7.02 -2.39 -0.02 1.11 16 39 H 0.41 5.45 8.37 -92.71 -0.78 4.67 16 40 H 0.41 8.31 8.49 -92.71 -0.79 7.52 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 44 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 46 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 47 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -71.98 365.56 0.89 -71.09 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.68 Total: 16.39 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.70 Total: -10.68 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.95 Total: -98.54 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.07 Total: -24.88 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -71.98 0.89 -71.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.168 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds