Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47348 * 2 1 4 4 H 1.09004 * 110.81158 * 51.66553 * 3 2 1 5 5 C 1.54886 * 110.75520 * 288.32765 * 3 2 1 6 6 C 1.54258 * 104.19708 * 203.73953 * 5 3 2 7 7 C 1.53878 * 106.59727 * 23.61351 * 6 5 3 8 8 C 1.54259 * 106.59591 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.49051 * 95.20600 * 8 7 6 10 10 C 1.53001 * 110.48611 * 217.70893 * 8 7 6 11 11 N 1.46498 * 109.47345 * 293.54860 * 10 8 7 12 12 C 1.34774 * 120.00109 * 179.97438 * 11 10 8 13 13 O 1.21588 * 120.00325 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00447 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47294 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46926 * 60.00512 * 22 20 18 24 24 H 1.48506 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47227 * 300.00303 * 22 20 18 26 26 H 1.09007 * 109.47028 * 299.99854 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99884 * 1 2 3 28 28 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47028 * 240.00146 * 2 1 3 30 30 H 1.08998 * 109.47333 * 120.00116 * 2 1 3 31 31 H 1.09004 * 110.48491 * 85.06326 * 5 3 2 32 32 H 1.09000 * 110.60243 * 322.48204 * 5 3 2 33 33 H 1.09001 * 110.03728 * 264.32936 * 6 5 3 34 34 H 1.09005 * 110.07243 * 142.91591 * 6 5 3 35 35 H 1.09002 * 110.03267 * 240.71487 * 7 6 5 36 36 H 1.09006 * 110.06980 * 119.30265 * 7 6 5 37 37 H 1.08998 * 109.47621 * 173.54558 * 10 8 7 38 38 H 1.09005 * 109.47058 * 53.54493 * 10 8 7 39 39 H 0.97006 * 119.99928 * 0.02562 * 11 10 8 40 40 H 0.97006 * 119.99798 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.47054 * 59.99647 * 15 14 12 42 42 H 1.09004 * 109.47074 * 300.00161 * 15 14 12 43 43 H 1.09001 * 109.46832 * 60.00150 * 16 15 14 44 44 H 1.08993 * 109.47194 * 299.99671 * 16 15 14 45 45 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 46 46 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 47 47 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0183 0.7992 5 6 1.7936 2.1118 -1.3749 6 6 2.8428 3.2408 -1.4395 7 6 3.9808 2.8384 -0.4851 8 6 3.5830 1.4793 0.1266 9 1 4.0330 0.6613 -0.4359 10 6 4.0020 1.4105 1.5965 11 7 5.4641 1.4166 1.6884 12 6 6.0638 1.3625 2.8941 13 8 5.3914 1.3091 3.9058 14 7 7.4090 1.3676 2.9786 15 6 8.0609 1.3083 4.2892 16 6 9.5796 1.3270 4.1047 17 6 10.2604 1.2656 5.4736 18 6 11.7563 1.2834 5.2918 19 1 12.1791 1.3339 4.2993 20 6 12.5851 1.2364 6.3927 21 7 12.0702 1.1754 7.6013 22 14 14.4393 1.2592 6.1674 23 1 14.8380 2.5089 5.4714 24 1 15.1001 1.2007 7.4961 25 1 14.8538 0.0867 5.3558 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.7858 2.5244 -1.4232 32 1 1.9514 1.3975 -2.1830 33 1 2.3990 4.1821 -1.1154 34 1 3.2249 3.3387 -2.4557 35 1 4.0892 3.5845 0.3022 36 1 4.9154 2.7405 -1.0376 37 1 3.6138 0.4949 2.0426 38 1 3.6010 2.2727 2.1294 39 1 6.0006 1.4603 0.8814 40 1 7.9455 1.4106 2.1716 41 1 7.7685 0.3904 4.7992 42 1 7.7563 2.1682 4.8858 43 1 9.8723 2.2447 3.5945 44 1 9.8838 0.4668 3.5084 45 1 9.9561 2.1261 6.0695 46 1 9.9677 0.3482 5.9841 47 1 12.6533 1.1419 8.3757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454459103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = -81.535451 kcal Electronic energy + Delta-G solvation = -21656.844003 eV Core-core repulsion = 18451.474245 eV Total energy + Delta-G solvation = -3205.369758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01791 -39.00450 -35.55206 -34.56505 -33.43953 -33.24441 -31.28928 -29.88854 -27.97948 -26.68915 -24.80386 -22.98826 -22.67958 -20.92654 -20.52143 -20.20719 -19.99397 -18.00179 -16.59322 -16.11880 -15.75125 -15.43565 -15.31057 -14.76611 -14.52760 -14.38869 -14.19943 -13.83434 -13.59200 -13.44520 -13.21098 -12.53938 -12.32649 -12.25220 -11.78873 -11.70330 -11.57261 -11.46655 -11.15630 -10.92952 -10.88506 -10.85655 -10.75144 -10.73148 -10.68927 -10.60435 -10.04354 -9.83009 -9.41328 -9.13295 -9.11642 -8.54099 -8.35200 -5.99931 -4.03060 2.88055 3.33047 3.37736 3.39689 3.43643 4.12860 4.18880 4.26517 4.44653 4.53206 4.76550 4.83132 4.89121 5.02230 5.11983 5.15406 5.17164 5.25641 5.35555 5.37777 5.47777 5.55953 5.58325 5.68306 5.71697 5.73527 5.78147 5.81356 5.84968 5.87305 5.93492 6.04212 6.13615 6.21948 6.51525 6.57434 6.65653 6.85042 7.05483 7.13040 7.65725 7.79130 7.99045 8.21134 8.39974 8.81643 9.03437 9.60814 11.11311 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.002175 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.106253 B =12873.424100 C =13280.086117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.101 4.101 9 H 0.081 0.919 10 C 0.148 3.852 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.509 0.978 -20.896 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.102 4.102 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.160 4.160 8 C -0.120 4.120 9 H 0.099 0.901 10 C 0.023 3.977 11 N -0.407 5.407 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.082 0.924 -19.722 29.621 hybrid contribution 1.613 0.070 -0.800 1.801 sum -20.470 0.994 -20.521 29.002 Atomic orbital electron populations 1.21774 0.95818 1.01558 1.01809 1.21561 0.95944 0.95879 1.02226 1.22133 0.93870 0.96329 0.97909 0.90132 1.22411 0.98813 0.97435 0.96875 1.22122 0.96075 0.98616 0.99474 1.22228 0.98330 0.96601 0.98805 1.22301 0.96222 0.98305 0.95146 0.90065 1.21188 0.79066 1.02143 0.95277 1.45117 1.07342 1.81239 1.07034 1.16039 0.82419 0.78019 0.83687 1.90916 1.63844 1.57902 1.34608 1.45386 1.04383 1.79255 1.10664 1.21496 0.93365 1.01794 0.82159 1.21887 0.90944 1.00784 1.02199 1.19027 0.94701 0.97675 0.89972 1.21169 0.91426 1.50872 0.92619 0.92718 1.25036 0.98862 0.95320 0.95304 1.69959 1.35196 1.50364 0.97738 0.86636 0.85459 0.78554 0.77194 1.20271 1.21281 1.20263 0.92689 0.92766 0.92869 0.91941 0.91658 0.91693 0.91582 0.91883 0.91959 0.91336 0.91803 0.91790 0.91777 0.77325 0.77393 0.92015 0.92011 0.92803 0.92794 0.96245 0.96247 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.80 37.16 0.36 -0.52 16 2 C -0.12 -0.74 5.43 -26.73 -0.15 -0.89 16 3 C -0.08 -0.54 2.30 -88.64 -0.20 -0.74 16 4 H 0.08 0.56 8.06 -51.93 -0.42 0.15 16 5 C -0.12 -0.67 5.69 -25.08 -0.14 -0.81 16 6 C -0.13 -0.75 6.80 -25.62 -0.17 -0.92 16 7 C -0.12 -0.81 6.05 -25.61 -0.15 -0.97 16 8 C -0.10 -0.71 2.37 -88.98 -0.21 -0.92 16 9 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 10 C 0.15 1.47 4.99 -4.04 -0.02 1.45 16 11 N -0.75 -8.32 5.40 -65.22 -0.35 -8.67 16 12 C 0.70 11.02 8.57 -86.92 -0.74 10.27 16 13 O -0.59 -12.07 16.34 5.29 0.09 -11.99 16 14 N -0.74 -11.09 5.56 -65.23 -0.36 -11.45 16 15 C 0.14 2.47 5.67 -4.05 -0.02 2.45 16 16 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 19 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 7.99 -51.93 -0.41 -0.04 16 30 H 0.06 0.46 7.78 -51.93 -0.40 0.06 16 31 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 7.94 -51.93 -0.41 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.71 7.78 -51.93 -0.40 0.31 16 38 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 39 H 0.39 3.24 8.34 -40.82 -0.34 2.90 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -32.89 375.52 -10.39 -43.28 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.99 Total: -0.01 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.15 Total: -7.13 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.02 Total: -46.39 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.89 -10.39 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.260 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds