Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47348 * 2 1 4 4 H 1.09004 * 110.81158 * 51.66553 * 3 2 1 5 5 C 1.54886 * 110.75520 * 288.32765 * 3 2 1 6 6 C 1.54258 * 104.19708 * 203.73953 * 5 3 2 7 7 C 1.53878 * 106.59727 * 23.61351 * 6 5 3 8 8 C 1.54259 * 106.59591 * 359.97438 * 7 6 5 9 9 H 1.09004 * 110.49051 * 95.20600 * 8 7 6 10 10 C 1.53001 * 110.48611 * 217.70893 * 8 7 6 11 11 N 1.46498 * 109.47345 * 293.54860 * 10 8 7 12 12 C 1.34774 * 120.00109 * 179.97438 * 11 10 8 13 13 O 1.21588 * 120.00325 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00239 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00447 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47294 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99944 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46926 * 60.00512 * 22 20 18 24 24 H 1.48506 * 109.46961 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47227 * 300.00303 * 22 20 18 26 26 H 1.09007 * 109.47028 * 299.99854 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99884 * 1 2 3 28 28 H 1.08997 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47028 * 240.00146 * 2 1 3 30 30 H 1.08998 * 109.47333 * 120.00116 * 2 1 3 31 31 H 1.09004 * 110.48491 * 85.06326 * 5 3 2 32 32 H 1.09000 * 110.60243 * 322.48204 * 5 3 2 33 33 H 1.09001 * 110.03728 * 264.32936 * 6 5 3 34 34 H 1.09005 * 110.07243 * 142.91591 * 6 5 3 35 35 H 1.09002 * 110.03267 * 240.71487 * 7 6 5 36 36 H 1.09006 * 110.06980 * 119.30265 * 7 6 5 37 37 H 1.08998 * 109.47621 * 173.54558 * 10 8 7 38 38 H 1.09005 * 109.47058 * 53.54493 * 10 8 7 39 39 H 0.97006 * 119.99928 * 0.02562 * 11 10 8 40 40 H 0.97006 * 119.99798 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.47054 * 59.99647 * 15 14 12 42 42 H 1.09004 * 109.47074 * 300.00161 * 15 14 12 43 43 H 1.09001 * 109.46832 * 60.00150 * 16 15 14 44 44 H 1.08993 * 109.47194 * 299.99671 * 16 15 14 45 45 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 46 46 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 47 47 H 0.96997 * 119.99752 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0183 0.7992 5 6 1.7936 2.1118 -1.3749 6 6 2.8428 3.2408 -1.4395 7 6 3.9808 2.8384 -0.4851 8 6 3.5830 1.4793 0.1266 9 1 4.0330 0.6613 -0.4359 10 6 4.0020 1.4105 1.5965 11 7 5.4641 1.4166 1.6884 12 6 6.0638 1.3625 2.8941 13 8 5.3914 1.3091 3.9058 14 7 7.4090 1.3676 2.9786 15 6 8.0609 1.3083 4.2892 16 6 9.5796 1.3270 4.1047 17 6 10.2604 1.2656 5.4736 18 6 11.7563 1.2834 5.2918 19 1 12.1791 1.3339 4.2993 20 6 12.5851 1.2364 6.3927 21 7 12.0702 1.1754 7.6013 22 14 14.4393 1.2592 6.1674 23 1 14.8380 2.5089 5.4714 24 1 15.1001 1.2007 7.4961 25 1 14.8538 0.0867 5.3558 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.7858 2.5244 -1.4232 32 1 1.9514 1.3975 -2.1830 33 1 2.3990 4.1821 -1.1154 34 1 3.2249 3.3387 -2.4557 35 1 4.0892 3.5845 0.3022 36 1 4.9154 2.7405 -1.0376 37 1 3.6138 0.4949 2.0426 38 1 3.6010 2.2727 2.1294 39 1 6.0006 1.4603 0.8814 40 1 7.9455 1.4106 2.1716 41 1 7.7685 0.3904 4.7992 42 1 7.7563 2.1682 4.8858 43 1 9.8723 2.2447 3.5945 44 1 9.8838 0.4668 3.5084 45 1 9.9561 2.1261 6.0695 46 1 9.9677 0.3482 5.9841 47 1 12.6533 1.1419 8.3757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454459103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -102.003866 kcal Electronic energy + Delta-G solvation = -21657.731580 eV Core-core repulsion = 18451.474245 eV Total energy + Delta-G solvation = -3206.257335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12972 -39.75516 -37.05609 -35.67611 -35.17069 -33.95933 -33.00964 -30.80861 -28.49181 -28.41940 -25.83203 -24.57672 -23.29356 -22.30313 -21.95957 -20.84107 -20.71050 -19.19375 -18.52506 -17.33771 -16.93045 -16.52216 -16.32823 -16.00300 -15.67077 -15.40043 -15.22384 -15.09287 -14.57562 -14.24694 -14.02609 -13.76633 -13.70653 -13.56398 -13.17733 -12.80031 -12.70495 -12.54166 -12.39317 -12.11028 -11.99659 -11.80172 -11.67368 -11.65233 -11.45903 -11.44798 -11.28943 -11.23690 -11.22205 -11.08723 -10.53888 -10.38216 -9.74533 -8.18348 -6.30034 1.42178 1.45547 1.53303 1.72848 2.15128 2.42860 3.15089 3.31942 3.59823 3.66577 3.77959 4.17331 4.21989 4.24039 4.31460 4.33578 4.47752 4.54869 4.57068 4.58478 4.67015 4.73311 4.83290 4.88781 4.94250 4.96849 5.01472 5.06419 5.13738 5.17800 5.20160 5.27268 5.29339 5.36569 5.44526 5.46865 5.50110 5.55230 5.56894 5.61958 5.72050 5.85165 6.02838 6.23506 6.87096 7.13155 7.39349 7.59243 8.93578 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039984 B = 0.002175 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.106253 B =12873.424100 C =13280.086117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.071 0.929 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.090 4.090 9 H 0.092 0.908 10 C 0.148 3.852 11 N -0.729 5.729 12 C 0.695 3.305 13 O -0.644 6.644 14 N -0.730 5.730 15 C 0.150 3.850 16 C -0.100 4.100 17 C 0.023 3.977 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.412 0.588 40 H 0.412 0.588 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.008 1.008 46 H -0.008 1.008 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.858 1.039 -23.868 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.162 4.162 7 C -0.159 4.159 8 C -0.109 4.109 9 H 0.111 0.889 10 C 0.024 3.976 11 N -0.385 5.385 12 C 0.395 3.605 13 O -0.526 6.526 14 N -0.386 5.386 15 C 0.025 3.975 16 C -0.138 4.138 17 C -0.015 4.015 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.248 0.752 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.429 0.990 -22.784 31.294 hybrid contribution 1.337 0.054 0.131 1.345 sum -20.092 1.044 -22.653 30.297 Atomic orbital electron populations 1.21769 0.95450 1.01750 1.01937 1.21548 0.96292 0.95650 1.02002 1.22118 0.93252 0.96465 0.98338 0.91060 1.22388 0.99045 0.97374 0.96264 1.22122 0.95811 0.98586 0.99694 1.22224 0.99254 0.95751 0.98676 1.22237 0.96719 0.99097 0.92842 0.88924 1.21259 0.78061 1.00899 0.97348 1.44941 1.07956 1.79452 1.06182 1.16224 0.82292 0.77754 0.84274 1.90889 1.64882 1.60072 1.36718 1.45019 1.04388 1.79046 1.10136 1.21065 0.92613 1.00314 0.83529 1.21584 0.91185 1.02141 0.98847 1.18947 0.94753 0.95059 0.92710 1.21653 0.92600 1.50391 0.93263 0.91447 1.26054 1.04495 0.94818 0.94923 1.70113 1.37190 1.51506 0.98732 0.85447 0.78714 0.79269 0.77275 1.19006 1.21220 1.18982 0.93217 0.91986 0.92671 0.91182 0.92826 0.91223 0.90830 0.92111 0.91057 0.92655 0.90686 0.92991 0.93229 0.75188 0.75152 0.93645 0.93661 0.91313 0.91292 0.98991 0.98987 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 71.98 0.71 -0.89 16 2 C -0.12 -1.34 5.43 30.59 0.17 -1.17 16 3 C -0.08 -0.96 2.30 -9.51 -0.02 -0.98 16 4 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 5 C -0.11 -1.05 5.69 31.67 0.18 -0.87 16 6 C -0.12 -1.22 6.80 31.32 0.21 -1.01 16 7 C -0.12 -1.38 6.05 31.32 0.19 -1.19 16 8 C -0.09 -1.12 2.37 -9.73 -0.02 -1.14 16 9 H 0.09 1.00 8.05 -2.38 -0.02 0.98 16 10 C 0.15 2.89 4.99 86.38 0.43 3.33 16 11 N -0.73 -15.20 5.40 -478.53 -2.58 -17.79 16 12 C 0.69 21.57 8.57 179.05 1.53 23.10 16 13 O -0.64 -26.68 16.34 -3.99 -0.07 -26.74 16 14 N -0.73 -20.94 5.56 -478.54 -2.66 -23.60 16 15 C 0.15 5.49 5.67 86.38 0.49 5.98 16 16 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 20 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 21 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.06 0.55 7.65 -2.39 -0.02 0.53 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.70 7.99 -2.38 -0.02 0.68 16 30 H 0.05 0.74 7.78 -2.39 -0.02 0.72 16 31 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 32 H 0.07 0.60 7.94 -2.39 -0.02 0.58 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.05 0.79 7.77 -2.39 -0.02 0.77 16 36 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.05 1.16 7.78 -2.39 -0.02 1.14 16 38 H 0.05 1.13 8.05 -2.38 -0.02 1.11 16 39 H 0.41 5.73 8.34 -92.70 -0.77 4.96 16 40 H 0.41 8.70 8.49 -92.70 -0.79 7.91 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 47 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.10 375.52 1.24 -70.86 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.63 Total: 15.78 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 4.87 Total: -7.16 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -4.96 Total: -98.70 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.74 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.10 1.24 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.144 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds