Wall clock time and date at job start Tue Mar 31 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 H 1.09001 * 110.53435 * 307.61205 * 3 2 1 5 5 C 1.54890 * 110.48476 * 70.22338 * 3 2 1 6 6 C 1.54894 * 102.74495 * 156.62378 * 5 3 2 7 7 C 1.54269 * 104.19671 * 322.05691 * 6 5 3 8 8 C 1.53878 * 106.59670 * 23.60846 * 7 6 5 9 9 H 1.09000 * 110.03545 * 240.66499 * 8 7 6 10 10 C 1.53004 * 110.02480 * 119.28605 * 8 7 6 11 11 N 1.46499 * 109.47198 * 66.45534 * 10 8 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47008 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00362 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99928 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47037 * 60.00067 * 22 20 18 24 24 H 1.48495 * 109.46817 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46854 * 299.99817 * 22 20 18 26 26 H 1.08998 * 109.47500 * 60.00262 * 1 2 3 27 27 H 1.09005 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47260 * 299.99728 * 1 2 3 29 29 H 1.09004 * 109.47118 * 239.99856 * 2 1 3 30 30 H 1.09000 * 109.47419 * 120.00267 * 2 1 3 31 31 H 1.09003 * 110.75648 * 38.30871 * 5 3 2 32 32 H 1.08998 * 110.75589 * 274.93287 * 5 3 2 33 33 H 1.09004 * 110.48374 * 203.38105 * 6 5 3 34 34 H 1.08996 * 110.60123 * 80.79103 * 6 5 3 35 35 H 1.09004 * 110.03175 * 264.32714 * 7 6 5 36 36 H 1.08993 * 110.03059 * 142.90055 * 7 6 5 37 37 H 1.09000 * 109.47211 * 306.44845 * 10 8 7 38 38 H 1.09006 * 109.46815 * 186.45081 * 10 8 7 39 39 H 0.97000 * 120.00386 * 359.97438 * 11 10 8 40 40 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 42 42 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 43 43 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 44 44 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 45 45 H 1.08990 * 109.47021 * 299.99845 * 17 16 15 46 46 H 1.09002 * 109.46620 * 60.00037 * 17 16 15 47 47 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5801 2.0106 -0.8086 5 6 1.7578 2.1172 1.3654 6 6 2.8152 3.2480 1.4127 7 6 4.0701 2.6196 0.7723 8 6 3.5771 1.4716 -0.1259 9 1 3.9983 0.5251 0.2130 10 6 3.9792 1.7334 -1.5788 11 7 5.4378 1.6728 -1.7004 12 6 6.0232 1.8733 -2.8977 13 8 5.3406 2.1050 -3.8770 14 7 7.3651 1.8171 -3.0097 15 6 8.0016 2.0411 -4.3100 16 6 9.5202 1.9291 -4.1605 17 6 10.1850 2.1624 -5.5187 18 6 11.6807 2.0527 -5.3712 19 1 12.1139 1.8376 -4.4056 20 6 12.4962 2.2258 -6.4694 21 7 11.9688 2.4873 -7.6455 22 14 14.3503 2.0891 -6.2869 23 1 14.7002 0.7341 -5.7904 24 1 14.9954 2.3145 -7.6053 25 1 14.8291 3.1096 -5.3200 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9089 1.4125 2.1831 32 1 0.7494 2.5301 1.3912 33 1 3.0177 3.5380 2.4438 34 1 2.4820 4.1092 0.8336 35 1 4.7298 2.2301 1.5477 36 1 4.5957 3.3632 0.1732 37 1 3.6301 2.7211 -1.8801 38 1 3.5293 0.9772 -2.2222 39 1 5.9825 1.4884 -0.9192 40 1 7.9096 1.6327 -2.2284 41 1 7.6503 1.2927 -5.0203 42 1 7.7448 3.0360 -4.6737 43 1 9.8715 2.6776 -3.4502 44 1 9.7771 0.9342 -3.7968 45 1 9.8336 1.4138 -6.2286 46 1 9.9281 3.1572 -5.8827 47 1 12.5425 2.6088 -8.4182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454459104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:05 Heat of formation + Delta-G solvation = -80.955291 kcal Electronic energy + Delta-G solvation = -21667.991284 eV Core-core repulsion = 18462.646684 eV Total energy + Delta-G solvation = -3205.344600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04523 -39.01923 -35.55446 -34.58323 -33.40995 -33.23166 -31.27929 -29.86486 -27.95929 -26.69481 -24.87173 -22.99057 -22.62203 -20.99042 -20.56993 -20.17723 -19.92104 -18.00708 -16.56397 -16.10237 -15.80787 -15.46372 -15.33682 -14.83646 -14.52489 -14.29756 -14.18307 -13.83915 -13.52059 -13.40442 -13.17673 -12.64558 -12.32094 -12.25332 -11.78949 -11.69639 -11.54602 -11.38489 -11.14639 -10.98616 -10.89657 -10.86158 -10.79356 -10.71262 -10.69123 -10.60406 -10.04611 -9.83061 -9.41409 -9.13629 -9.11695 -8.54356 -8.35253 -5.99928 -4.03098 2.87999 3.33020 3.37729 3.39660 3.43443 4.14244 4.20245 4.26245 4.44661 4.53562 4.76110 4.84019 4.88212 4.99425 5.14027 5.16476 5.20520 5.27273 5.35528 5.38077 5.46919 5.56351 5.57272 5.67586 5.70297 5.73797 5.77613 5.83097 5.84929 5.87707 5.94806 6.01785 6.14136 6.21869 6.51561 6.57296 6.65555 6.84931 7.05402 7.12886 7.65704 7.79099 7.98990 8.20969 8.39917 8.81454 9.03408 9.60787 11.11282 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040723 B = 0.002166 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.400574 B =12924.741456 C =13234.316861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.124 4.124 8 C -0.101 4.101 9 H 0.079 0.921 10 C 0.147 3.853 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.247 -2.734 21.044 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.162 4.162 8 C -0.119 4.119 9 H 0.097 0.903 10 C 0.023 3.977 11 N -0.408 5.408 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.830 -2.477 19.897 29.640 hybrid contribution 1.624 -0.240 0.726 1.795 sum -20.206 -2.717 20.623 28.999 Atomic orbital electron populations 1.21779 0.95821 1.01539 1.01855 1.21585 0.95952 0.95900 1.02109 1.22016 0.93807 0.96366 0.98153 0.90234 1.22560 0.98776 0.97376 0.96832 1.22350 0.95305 0.98080 1.00560 1.22258 0.97825 0.97480 0.98609 1.22102 0.96078 0.99399 0.94370 0.90286 1.21244 0.79194 1.01873 0.95416 1.45136 1.07653 1.78503 1.09478 1.16041 0.82465 0.78282 0.83382 1.90918 1.63054 1.56401 1.36894 1.45386 1.04639 1.76601 1.13057 1.21495 0.93616 1.01259 0.82442 1.21888 0.90949 1.00797 1.02182 1.19025 0.94806 0.97475 0.90069 1.21169 0.91607 1.48658 0.94658 0.92715 1.25037 0.98815 0.95298 0.95359 1.69956 1.35321 1.48512 0.99468 0.86638 0.85481 0.78552 0.77186 1.20269 1.21281 1.20262 0.92684 0.92893 0.92716 0.91790 0.91960 0.91450 0.91582 0.91797 0.91600 0.91761 0.91223 0.91761 0.91873 0.77311 0.77388 0.92006 0.92017 0.92800 0.92797 0.96241 0.96248 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.79 37.15 0.36 -0.50 16 2 C -0.12 -0.73 5.28 -26.74 -0.14 -0.87 16 3 C -0.08 -0.54 2.39 -88.96 -0.21 -0.76 16 4 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 5 C -0.12 -0.68 5.67 -24.74 -0.14 -0.82 16 6 C -0.13 -0.77 6.83 -25.07 -0.17 -0.95 16 7 C -0.12 -0.83 6.13 -25.61 -0.16 -0.99 16 8 C -0.10 -0.71 2.55 -89.50 -0.23 -0.93 16 9 H 0.08 0.53 7.84 -51.93 -0.41 0.12 16 10 C 0.15 1.48 4.70 -4.04 -0.02 1.46 16 11 N -0.75 -8.33 5.30 -65.22 -0.35 -8.68 16 12 C 0.70 11.03 8.57 -86.92 -0.74 10.28 16 13 O -0.59 -12.09 16.34 5.28 0.09 -12.00 16 14 N -0.74 -11.09 5.56 -65.23 -0.36 -11.45 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 7.55 -51.93 -0.39 -0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 31 H 0.07 0.37 7.97 -51.93 -0.41 -0.04 16 32 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.55 7.58 -51.93 -0.39 0.15 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.39 3.25 8.32 -40.82 -0.34 2.91 16 40 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.89 375.45 -10.41 -43.30 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -9.00 Total: 0.03 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.16 Total: -7.17 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.03 Total: -46.40 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.89 -10.41 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.657 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds