Wall clock time and date at job start Tue Mar 31 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53001 * 109.47301 * 2 1 4 4 H 1.09001 * 110.53435 * 307.61205 * 3 2 1 5 5 C 1.54890 * 110.48476 * 70.22338 * 3 2 1 6 6 C 1.54894 * 102.74495 * 156.62378 * 5 3 2 7 7 C 1.54269 * 104.19671 * 322.05691 * 6 5 3 8 8 C 1.53878 * 106.59670 * 23.60846 * 7 6 5 9 9 H 1.09000 * 110.03545 * 240.66499 * 8 7 6 10 10 C 1.53004 * 110.02480 * 119.28605 * 8 7 6 11 11 N 1.46499 * 109.47198 * 66.45534 * 10 8 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47008 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00362 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99928 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47037 * 60.00067 * 22 20 18 24 24 H 1.48495 * 109.46817 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46854 * 299.99817 * 22 20 18 26 26 H 1.08998 * 109.47500 * 60.00262 * 1 2 3 27 27 H 1.09005 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47260 * 299.99728 * 1 2 3 29 29 H 1.09004 * 109.47118 * 239.99856 * 2 1 3 30 30 H 1.09000 * 109.47419 * 120.00267 * 2 1 3 31 31 H 1.09003 * 110.75648 * 38.30871 * 5 3 2 32 32 H 1.08998 * 110.75589 * 274.93287 * 5 3 2 33 33 H 1.09004 * 110.48374 * 203.38105 * 6 5 3 34 34 H 1.08996 * 110.60123 * 80.79103 * 6 5 3 35 35 H 1.09004 * 110.03175 * 264.32714 * 7 6 5 36 36 H 1.08993 * 110.03059 * 142.90055 * 7 6 5 37 37 H 1.09000 * 109.47211 * 306.44845 * 10 8 7 38 38 H 1.09006 * 109.46815 * 186.45081 * 10 8 7 39 39 H 0.97000 * 120.00386 * 359.97438 * 11 10 8 40 40 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 42 42 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 43 43 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 44 44 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 45 45 H 1.08990 * 109.47021 * 299.99845 * 17 16 15 46 46 H 1.09002 * 109.46620 * 60.00037 * 17 16 15 47 47 H 0.97000 * 120.00497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5801 2.0106 -0.8086 5 6 1.7578 2.1172 1.3654 6 6 2.8152 3.2480 1.4127 7 6 4.0701 2.6196 0.7723 8 6 3.5771 1.4716 -0.1259 9 1 3.9983 0.5251 0.2130 10 6 3.9792 1.7334 -1.5788 11 7 5.4378 1.6728 -1.7004 12 6 6.0232 1.8733 -2.8977 13 8 5.3406 2.1050 -3.8770 14 7 7.3651 1.8171 -3.0097 15 6 8.0016 2.0411 -4.3100 16 6 9.5202 1.9291 -4.1605 17 6 10.1850 2.1624 -5.5187 18 6 11.6807 2.0527 -5.3712 19 1 12.1139 1.8376 -4.4056 20 6 12.4962 2.2258 -6.4694 21 7 11.9688 2.4873 -7.6455 22 14 14.3503 2.0891 -6.2869 23 1 14.7002 0.7341 -5.7904 24 1 14.9954 2.3145 -7.6053 25 1 14.8291 3.1096 -5.3200 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9089 1.4125 2.1831 32 1 0.7494 2.5301 1.3912 33 1 3.0177 3.5380 2.4438 34 1 2.4820 4.1092 0.8336 35 1 4.7298 2.2301 1.5477 36 1 4.5957 3.3632 0.1732 37 1 3.6301 2.7211 -1.8801 38 1 3.5293 0.9772 -2.2222 39 1 5.9825 1.4884 -0.9192 40 1 7.9096 1.6327 -2.2284 41 1 7.6503 1.2927 -5.0203 42 1 7.7448 3.0360 -4.6737 43 1 9.8715 2.6776 -3.4502 44 1 9.7771 0.9342 -3.7968 45 1 9.8336 1.4138 -6.2286 46 1 9.9281 3.1572 -5.8827 47 1 12.5425 2.6088 -8.4182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454459104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:04 Heat of formation + Delta-G solvation = -101.396591 kcal Electronic energy + Delta-G solvation = -21668.877685 eV Core-core repulsion = 18462.646684 eV Total energy + Delta-G solvation = -3206.231001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14762 -39.78648 -37.05778 -35.68844 -35.17264 -33.92909 -33.00077 -30.78186 -28.48819 -28.40640 -25.88467 -24.61335 -23.21543 -22.30653 -22.00284 -20.92352 -20.61728 -19.19286 -18.52381 -17.29822 -16.96195 -16.51107 -16.35732 -16.08082 -15.61629 -15.45994 -15.23195 -15.13253 -14.40770 -14.24628 -13.93385 -13.80913 -13.72055 -13.54331 -13.28154 -12.79171 -12.70682 -12.54289 -12.39457 -12.08037 -11.89023 -11.79853 -11.68305 -11.65183 -11.51508 -11.41344 -11.32922 -11.27069 -11.22607 -11.10096 -10.53970 -10.38771 -9.75135 -8.18366 -6.30100 1.42128 1.45502 1.53268 1.72494 2.14647 2.42783 3.15035 3.31758 3.61565 3.66983 3.77266 4.17184 4.22499 4.23776 4.30397 4.33645 4.48314 4.55552 4.55731 4.56984 4.70194 4.73894 4.85396 4.88474 4.95130 4.96703 5.01204 5.06086 5.11492 5.17655 5.20096 5.27684 5.28769 5.37782 5.45437 5.46220 5.48475 5.54642 5.56181 5.62598 5.71939 5.85059 6.02489 6.23407 6.87025 7.12768 7.39293 7.58805 8.93526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040723 B = 0.002166 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.400574 B =12924.741456 C =13234.316861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.084 4.084 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.090 4.090 9 H 0.090 0.910 10 C 0.148 3.852 11 N -0.729 5.729 12 C 0.695 3.305 13 O -0.644 6.644 14 N -0.730 5.730 15 C 0.150 3.850 16 C -0.100 4.100 17 C 0.023 3.977 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.412 0.588 40 H 0.412 0.588 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.008 1.008 46 H -0.008 1.008 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 -3.415 23.961 31.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.150 4.150 6 C -0.164 4.164 7 C -0.160 4.160 8 C -0.109 4.109 9 H 0.109 0.891 10 C 0.024 3.976 11 N -0.386 5.386 12 C 0.395 3.605 13 O -0.526 6.526 14 N -0.386 5.386 15 C 0.025 3.975 16 C -0.138 4.138 17 C -0.015 4.015 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.248 0.752 40 H 0.249 0.751 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.157 -3.175 22.903 31.341 hybrid contribution 1.343 -0.019 -0.185 1.356 sum -19.814 -3.194 22.718 30.314 Atomic orbital electron populations 1.21775 0.95509 1.01766 1.01916 1.21569 0.96244 0.95520 1.02036 1.22003 0.93198 0.96639 0.98470 0.91315 1.22535 0.98900 0.97231 0.96336 1.22359 0.95149 0.97966 1.00912 1.22249 0.98211 0.96916 0.98639 1.22045 0.96585 1.00148 0.92083 0.89126 1.21315 0.78196 1.00659 0.97444 1.44958 1.08279 1.76784 1.08535 1.16226 0.82319 0.78025 0.83977 1.90890 1.64114 1.58584 1.38981 1.45019 1.04664 1.76398 1.12495 1.21065 0.92838 0.99856 0.83763 1.21584 0.91231 1.02022 0.98920 1.18945 0.94801 0.95012 0.92711 1.21652 0.92779 1.48226 0.95257 0.91445 1.26055 1.04445 0.94825 0.94956 1.70111 1.37337 1.49669 1.00424 0.85448 0.78740 0.79215 0.77310 1.18996 1.21217 1.18990 0.93286 0.92600 0.92010 0.92746 0.91100 0.90572 0.91154 0.90868 0.92353 0.90350 0.92497 0.93249 0.93132 0.75172 0.75146 0.93637 0.93666 0.91305 0.91296 0.98980 0.98995 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.79 71.98 0.70 -0.85 16 2 C -0.12 -1.27 5.28 30.59 0.16 -1.11 16 3 C -0.08 -0.98 2.39 -9.72 -0.02 -1.00 16 4 H 0.07 0.96 7.85 -2.39 -0.02 0.94 16 5 C -0.11 -1.06 5.67 31.89 0.18 -0.88 16 6 C -0.13 -1.33 6.83 31.67 0.22 -1.11 16 7 C -0.12 -1.39 6.13 31.32 0.19 -1.20 16 8 C -0.09 -1.12 2.55 -10.07 -0.03 -1.14 16 9 H 0.09 0.97 7.84 -2.39 -0.02 0.95 16 10 C 0.15 2.91 4.70 86.38 0.41 3.31 16 11 N -0.73 -15.27 5.30 -478.52 -2.54 -17.80 16 12 C 0.69 21.62 8.57 179.05 1.53 23.15 16 13 O -0.64 -26.74 16.34 -4.01 -0.07 -26.80 16 14 N -0.73 -20.97 5.56 -478.54 -2.66 -23.63 16 15 C 0.15 5.50 5.67 86.38 0.49 5.99 16 16 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 20 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 21 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.06 0.54 7.55 -2.39 -0.02 0.52 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 0.66 8.02 -2.39 -0.02 0.65 16 31 H 0.08 0.62 7.97 -2.39 -0.02 0.60 16 32 H 0.07 0.62 8.06 -2.39 -0.02 0.61 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.81 7.58 -2.39 -0.02 0.79 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.41 5.77 8.32 -92.71 -0.77 5.00 16 40 H 0.41 8.71 8.49 -92.71 -0.79 7.93 16 41 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.15 375.45 1.26 -70.90 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.63 Total: 15.86 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.84 Total: -7.16 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -4.91 Total: -98.75 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.07 Total: -26.80 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.15 1.26 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds