Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 H 1.09005 * 110.05842 * 305.04399 * 3 2 1 5 5 C 1.54264 * 110.03090 * 66.45515 * 3 2 1 6 6 C 1.54897 * 104.19493 * 142.89700 * 5 3 2 7 7 C 1.54889 * 102.74591 * 322.05796 * 6 5 3 8 8 C 1.53873 * 110.03450 * 183.62588 * 3 2 1 9 9 H 1.08999 * 110.03697 * 121.43095 * 8 3 2 10 10 C 1.52998 * 110.07252 * 0.02562 * 8 3 2 11 11 N 1.46502 * 109.47090 * 176.35596 * 10 8 3 12 12 C 1.34771 * 119.99716 * 180.02562 * 11 10 8 13 13 O 1.21583 * 120.00481 * 0.02562 * 12 11 10 14 14 N 1.34785 * 119.99888 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00142 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47050 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47144 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47434 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99464 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00048 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00054 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99656 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47012 * 60.00136 * 22 20 18 24 24 H 1.48502 * 109.46886 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47123 * 300.00000 * 22 20 18 26 26 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46928 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.47146 * 59.99711 * 1 2 3 29 29 H 1.09000 * 109.46928 * 240.00194 * 2 1 3 30 30 H 1.08998 * 109.47146 * 120.00289 * 2 1 3 31 31 H 1.08998 * 110.49036 * 24.22157 * 5 3 2 32 32 H 1.09000 * 110.49063 * 261.57197 * 5 3 2 33 33 H 1.09000 * 110.75568 * 80.37108 * 6 5 3 34 34 H 1.09003 * 110.75125 * 203.55592 * 6 5 3 35 35 H 1.08998 * 110.48466 * 156.62292 * 7 6 5 36 36 H 1.09000 * 110.48547 * 279.12998 * 7 6 5 37 37 H 1.08999 * 109.47371 * 296.36109 * 10 8 3 38 38 H 1.09003 * 109.46634 * 56.35934 * 10 8 3 39 39 H 0.97004 * 119.99891 * 0.02562 * 11 10 8 40 40 H 0.97004 * 119.99719 * 359.97438 * 14 12 11 41 41 H 1.08995 * 109.46909 * 299.99787 * 15 14 12 42 42 H 1.09001 * 109.46858 * 59.99987 * 15 14 12 43 43 H 1.08995 * 109.47384 * 299.99856 * 16 15 14 44 44 H 1.09000 * 109.46916 * 59.99894 * 16 15 14 45 45 H 1.08995 * 109.47180 * 300.00370 * 17 16 15 46 46 H 1.09000 * 109.46983 * 60.00324 * 17 16 15 47 47 H 0.97002 * 120.00297 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6104 1.9909 -0.8383 5 6 1.6704 2.1336 1.3287 6 6 2.8919 3.0331 1.6416 7 6 4.0861 2.1588 1.1850 8 6 3.5760 1.4585 -0.0914 9 1 3.8918 2.0146 -0.9741 10 6 4.1132 0.0273 -0.1544 11 7 5.5675 0.0588 -0.3286 12 6 6.2614 -1.0936 -0.4111 13 8 5.6805 -2.1594 -0.3415 14 7 7.5994 -1.0646 -0.5708 15 6 8.3537 -2.3172 -0.6611 16 6 9.8409 -2.0053 -0.8392 17 6 10.6287 -3.3135 -0.9329 18 6 12.0936 -3.0064 -1.1090 19 1 12.4291 -1.9806 -1.1496 20 6 13.0054 -4.0348 -1.2182 21 7 12.5968 -5.2838 -1.1683 22 14 14.8212 -3.6540 -1.4358 23 1 15.3048 -2.8678 -0.2726 24 1 15.5858 -4.9237 -1.5268 25 1 15.0164 -2.8677 -2.6802 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5292 1.3942 2.1170 32 1 0.7721 2.7390 1.2068 33 1 2.8480 3.9580 1.0664 34 1 2.9512 3.2463 2.7089 35 1 4.9508 2.7825 0.9583 36 1 4.3365 1.4250 1.9511 37 1 3.8694 -0.4935 0.7716 38 1 3.6578 -0.4950 -0.9958 39 1 6.0309 0.9092 -0.3845 40 1 8.0629 -0.2142 -0.6267 41 1 8.2100 -2.8944 0.2522 42 1 7.9990 -2.8941 -1.5152 43 1 9.9843 -1.4283 -1.7527 44 1 10.1959 -1.4281 0.0146 45 1 10.4853 -3.8902 -0.0192 46 1 10.2739 -3.8910 -1.7865 47 1 13.2383 -6.0074 -1.2448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454459105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = -75.458074 kcal Electronic energy + Delta-G solvation = -21840.957545 eV Core-core repulsion = 18635.851322 eV Total energy + Delta-G solvation = -3205.106223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15608 -39.09749 -35.51456 -34.46039 -33.42997 -33.25393 -31.28928 -29.90552 -27.89610 -26.67955 -24.66329 -23.21307 -22.80606 -21.06009 -20.75085 -20.30159 -19.18650 -17.81141 -16.69178 -16.36534 -15.79464 -15.48278 -15.19726 -14.82575 -14.50581 -14.44634 -14.14701 -13.89095 -13.66545 -13.47007 -12.75382 -12.53834 -12.30456 -12.23590 -11.78165 -11.68011 -11.61568 -11.36901 -11.15226 -11.01477 -10.95193 -10.87025 -10.69068 -10.65066 -10.60569 -10.55949 -10.04419 -9.82864 -9.41295 -9.11557 -9.10207 -8.52837 -8.35246 -5.99898 -4.03036 2.89850 3.33070 3.37756 3.39716 3.44361 4.15489 4.19281 4.27327 4.44494 4.53045 4.76548 4.89288 4.92957 4.99973 5.13790 5.16134 5.24164 5.29956 5.35625 5.39948 5.46555 5.55222 5.59266 5.68394 5.73609 5.76746 5.78748 5.82895 5.85274 5.87568 6.02344 6.06127 6.14698 6.22176 6.53802 6.57810 6.65829 6.85449 7.05710 7.13676 7.65799 7.79219 7.99071 8.21915 8.40021 8.82427 9.03473 9.60861 11.11363 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039996 B = 0.002252 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.909639 B =12428.590866 C =12951.925707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.074 0.926 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.121 4.121 8 C -0.102 4.102 9 H 0.077 0.923 10 C 0.144 3.856 11 N -0.752 5.752 12 C 0.699 3.301 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.924 18.181 3.694 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.101 4.101 4 H 0.092 0.908 5 C -0.157 4.157 6 C -0.164 4.164 7 C -0.159 4.159 8 C -0.120 4.120 9 H 0.096 0.904 10 C 0.020 3.980 11 N -0.409 5.409 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.226 0.774 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.399 16.954 3.748 29.138 hybrid contribution 1.511 0.941 -0.214 1.793 sum -21.888 17.894 3.534 28.492 Atomic orbital electron populations 1.21796 0.95968 1.01616 1.01588 1.21810 0.95814 0.96032 1.02830 1.21754 0.93617 0.96462 0.98255 0.90775 1.22462 0.97765 0.98468 0.96958 1.22489 0.94849 0.98106 1.00913 1.22464 0.97778 0.98693 0.96916 1.22062 0.95539 0.95449 0.98994 0.90415 1.21470 0.78584 0.95966 1.01974 1.45181 1.08096 1.07265 1.80316 1.16035 0.81937 0.84124 0.78064 1.90912 1.69235 1.28978 1.58150 1.45391 1.05310 1.10632 1.78385 1.21492 0.91697 0.83941 1.01677 1.21884 0.91329 1.01952 1.00642 1.19025 0.93984 0.90733 0.97632 1.21170 0.92140 0.92620 1.50157 0.92719 1.25032 0.99002 0.95097 0.95369 1.69954 1.34551 0.98507 1.50257 0.86638 0.85067 0.77503 0.78654 1.20266 1.21284 1.20261 0.92780 0.92779 0.92943 0.91236 0.91366 0.91360 0.91792 0.91620 0.91615 0.91673 0.91127 0.91527 0.91452 0.77416 0.77405 0.92017 0.92026 0.92802 0.92807 0.96248 0.96251 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.75 37.16 0.36 -0.61 16 2 C -0.13 -0.93 4.11 -26.73 -0.11 -1.04 16 3 C -0.08 -0.53 2.94 -89.51 -0.26 -0.79 16 4 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.12 -0.71 5.46 -25.07 -0.14 -0.85 16 6 C -0.13 -0.75 6.91 -24.73 -0.17 -0.92 16 7 C -0.12 -0.81 6.01 -25.07 -0.15 -0.96 16 8 C -0.10 -0.72 2.98 -89.50 -0.27 -0.98 16 9 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 10 C 0.14 1.44 3.78 -4.04 -0.02 1.42 16 11 N -0.75 -8.34 5.39 -65.22 -0.35 -8.70 16 12 C 0.70 11.01 8.57 -86.92 -0.74 10.26 16 13 O -0.59 -12.02 16.34 5.29 0.09 -11.94 16 14 N -0.74 -11.10 5.56 -65.23 -0.36 -11.46 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.05 0.32 7.46 -51.93 -0.39 -0.07 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.56 6.42 -51.93 -0.33 0.23 16 30 H 0.07 0.55 6.96 -51.93 -0.36 0.19 16 31 H 0.07 0.44 7.78 -51.93 -0.40 0.03 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 37 H 0.07 0.75 6.96 -51.93 -0.36 0.39 16 38 H 0.07 0.75 6.42 -51.93 -0.33 0.41 16 39 H 0.39 3.25 8.32 -40.82 -0.34 2.91 16 40 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -32.85 369.08 -10.29 -43.14 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.73 Total: 0.65 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.21 Total: -7.56 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.02 Total: -46.43 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.85 -10.29 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454459105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.318 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds