Wall clock time and date at job start Tue Mar 31 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46772 * 2 1 4 4 H 1.08996 * 109.47165 * 305.00346 * 3 2 1 5 5 C 1.52996 * 109.47024 * 65.00716 * 3 2 1 6 6 C 1.53001 * 109.47486 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46637 * 299.99742 * 6 5 3 8 8 C 1.53006 * 109.46977 * 59.99946 * 7 6 5 9 9 C 1.52997 * 109.47127 * 299.99541 * 8 7 6 10 10 H 1.09002 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47060 * 300.00449 * 9 8 7 12 12 N 1.46506 * 109.46901 * 294.99627 * 11 9 8 13 13 C 1.34778 * 119.99654 * 180.02562 * 12 11 9 14 14 O 1.21590 * 120.00137 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99609 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99839 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47289 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47354 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99773 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99941 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99985 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00253 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46754 * 89.99944 * 22 20 18 24 24 H 1.48501 * 109.47356 * 209.99943 * 22 20 18 25 25 H 1.48503 * 109.46996 * 330.00624 * 22 20 18 26 26 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46873 * 299.99220 * 1 2 3 28 28 H 1.08998 * 109.47360 * 59.99724 * 1 2 3 29 29 H 1.09000 * 109.46873 * 240.00780 * 2 1 3 30 30 H 1.08998 * 109.47360 * 120.00276 * 2 1 3 31 31 H 1.09001 * 109.46993 * 299.99936 * 5 3 2 32 32 H 1.09004 * 109.47298 * 59.99521 * 5 3 2 33 33 H 1.08996 * 109.46778 * 59.99584 * 6 5 3 34 34 H 1.08992 * 109.47514 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46986 * 179.97438 * 7 6 5 36 36 H 1.08993 * 109.47662 * 299.99908 * 7 6 5 37 37 H 1.08998 * 109.46505 * 179.97438 * 8 7 6 38 38 H 1.08996 * 109.46884 * 60.00293 * 8 7 6 39 39 H 1.08990 * 109.47170 * 54.99895 * 11 9 8 40 40 H 1.09001 * 109.46952 * 174.99972 * 11 9 8 41 41 H 0.97000 * 119.99867 * 0.02562 * 12 11 9 42 42 H 0.97000 * 119.99912 * 0.02562 * 15 13 12 43 43 H 1.09001 * 109.47036 * 300.00418 * 16 15 13 44 44 H 1.09006 * 109.47106 * 59.99910 * 16 15 13 45 45 H 1.09001 * 109.47173 * 300.00028 * 17 16 15 46 46 H 1.08997 * 109.47465 * 60.00022 * 17 16 15 47 47 H 0.96996 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1457 3.5689 1.3078 7 6 3.6705 3.5702 1.1823 8 6 4.0752 2.8862 -0.1252 9 6 3.5648 1.4439 -0.1255 10 1 3.8535 0.9565 -1.0568 11 6 4.1744 0.6869 1.0561 12 7 5.6246 0.5848 0.8748 13 6 6.3764 -0.0464 1.7983 14 8 5.8510 -0.5315 2.7817 15 7 7.7106 -0.1399 1.6317 16 6 8.5279 -0.8255 2.6358 17 6 9.9966 -0.7894 2.2091 18 6 10.8373 -1.4952 3.2417 19 1 10.3706 -1.9260 4.1152 20 6 12.2021 -1.5909 3.0712 21 7 12.9357 -2.2073 3.9721 22 14 13.0092 -0.8464 1.5600 23 1 13.3935 0.5592 1.8459 24 1 14.2213 -1.6295 1.2096 25 1 12.0542 -0.8769 0.4231 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5489 2.1251 1.3971 32 1 2.0699 1.5874 2.1492 33 1 1.7113 4.1081 0.4660 34 1 1.8570 4.0562 2.2390 35 1 4.0342 4.5977 1.1821 36 1 4.1049 3.0308 2.0240 37 1 5.1615 2.8876 -0.2147 38 1 3.6409 3.4256 -0.9669 39 1 3.9607 1.2233 1.9805 40 1 3.7435 -0.3130 1.1083 41 1 6.0437 0.9714 0.0900 42 1 8.1297 0.2474 0.8473 43 1 8.4170 -0.3251 3.5978 44 1 8.2004 -1.8613 2.7252 45 1 10.1079 -1.2895 1.2470 46 1 10.3238 0.2465 2.1200 47 1 13.8958 -2.2750 3.8520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454797561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:02 Heat of formation + Delta-G solvation = -73.856453 kcal Electronic energy + Delta-G solvation = -22578.318418 eV Core-core repulsion = 19373.281646 eV Total energy + Delta-G solvation = -3205.036771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.34100 -39.09092 -35.14319 -34.46533 -34.08237 -32.75274 -31.22874 -29.88331 -29.36128 -26.17583 -24.36558 -24.16594 -22.38737 -21.06544 -20.76026 -20.51965 -19.07264 -17.76611 -16.86113 -16.24742 -15.88112 -15.36103 -14.99042 -14.65499 -14.41872 -14.27791 -13.96116 -13.65804 -13.56704 -13.51623 -13.08592 -12.90242 -12.77591 -12.57905 -12.02205 -11.91128 -11.69457 -11.45139 -11.41812 -11.28980 -11.17944 -10.88881 -10.42962 -10.35555 -10.23940 -10.22705 -10.17873 -9.95163 -9.71099 -9.29830 -8.95292 -8.60481 -8.31243 -6.08953 -4.08743 3.06273 3.26480 3.33965 3.35451 3.59560 4.29689 4.34309 4.39366 4.39466 4.65880 4.79744 4.83235 4.94100 4.97788 5.04931 5.14740 5.18093 5.23989 5.27908 5.38301 5.43872 5.49142 5.59522 5.66167 5.72616 5.74846 5.82968 5.85905 5.92023 6.00042 6.01393 6.05959 6.13723 6.16015 6.27630 6.28656 6.60505 6.66821 6.86941 7.09948 7.27907 7.35162 7.70113 8.35812 8.49112 8.95299 8.98805 9.51262 11.04183 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030358 B = 0.002845 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.109206 B = 9840.883600 C =10136.721999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.075 4.075 4 H 0.073 0.927 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.095 4.095 10 H 0.075 0.925 11 C 0.139 3.861 12 N -0.752 5.752 13 C 0.698 3.302 14 O -0.596 6.596 15 N -0.743 5.743 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.068 3.932 21 N -0.899 5.899 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.792 11.661 -12.603 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.094 4.094 4 H 0.091 0.909 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.151 4.151 9 C -0.114 4.114 10 H 0.094 0.906 11 C 0.015 3.985 12 N -0.409 5.409 13 C 0.398 3.602 14 O -0.474 6.474 15 N -0.397 5.397 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.225 0.775 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.081 11.128 -11.602 28.954 hybrid contribution 1.036 0.715 -1.497 1.956 sum -23.045 11.843 -13.099 29.033 Atomic orbital electron populations 1.21813 0.95935 1.01547 1.01716 1.21683 0.95876 0.96324 1.02513 1.21108 0.93772 0.96105 0.98419 0.90896 1.21715 1.00680 0.95757 0.97713 1.21518 0.95771 0.96725 1.01533 1.21593 0.95913 1.00444 0.98258 1.21547 1.00614 0.94942 0.97988 1.21412 0.95414 0.96078 0.98496 0.90628 1.21370 0.78755 1.00208 0.98159 1.45164 1.07738 1.62375 1.25610 1.16049 0.81771 0.79372 0.83036 1.90900 1.72358 1.53469 1.30721 1.45518 1.05272 1.61606 1.27333 1.21353 0.90463 0.95874 0.89727 1.19792 0.91020 0.97139 0.97977 1.20930 0.91734 1.36083 1.07226 0.90588 1.25004 0.97252 0.94789 0.96293 1.69906 1.06090 1.42885 1.34880 0.86742 0.79029 0.79376 0.83849 1.20264 1.21314 1.19105 0.92881 0.92473 0.92986 0.91936 0.91314 0.91750 0.91378 0.92254 0.92139 0.92174 0.91310 0.91883 0.91896 0.91220 0.91713 0.77502 0.77683 0.92243 0.92208 0.96065 0.96501 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.13 -0.93 4.90 -26.73 -0.13 -1.06 16 3 C -0.08 -0.53 1.97 -90.62 -0.18 -0.70 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.12 -0.89 4.69 -26.73 -0.13 -1.01 16 6 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 7 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 8 C -0.11 -0.83 5.32 -26.73 -0.14 -0.98 16 9 C -0.10 -0.74 2.23 -90.62 -0.20 -0.94 16 10 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 11 C 0.14 1.52 4.14 -4.04 -0.02 1.50 16 12 N -0.75 -9.22 5.29 -65.22 -0.34 -9.57 16 13 C 0.70 12.04 8.57 -86.91 -0.74 11.29 16 14 O -0.60 -12.87 16.34 5.29 0.09 -12.78 16 15 N -0.74 -12.69 5.56 -65.23 -0.36 -13.05 16 16 C 0.15 3.13 5.61 -4.05 -0.02 3.11 16 17 C -0.02 -0.50 4.16 -27.89 -0.12 -0.61 16 18 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 19 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 22 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.59 6.59 -51.93 -0.34 0.24 16 31 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 32 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.68 6.32 -51.93 -0.33 0.35 16 37 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.85 4.83 -51.93 -0.25 0.60 16 40 H 0.06 0.78 6.28 -51.93 -0.33 0.46 16 41 H 0.39 3.71 7.67 -40.82 -0.31 3.40 16 42 H 0.39 5.49 8.49 -40.82 -0.35 5.15 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 46 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -32.76 354.98 -9.53 -42.29 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.30 Total: 3.46 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.06 Total: -5.41 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.07 Total: -49.41 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.76 -9.53 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454797561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.570 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds