Wall clock time and date at job start Tue Mar 31 2020 05:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 H 1.09003 * 110.53446 * 52.39229 * 3 2 1 5 5 C 1.54885 * 110.48713 * 289.77876 * 3 2 1 6 6 C 1.54889 * 102.74671 * 203.37844 * 5 3 2 7 7 C 1.54265 * 104.19957 * 37.93991 * 6 5 3 8 8 C 1.53877 * 106.59639 * 336.39086 * 7 6 5 9 9 H 1.08991 * 110.07568 * 240.68826 * 8 7 6 10 10 N 1.46500 * 110.03044 * 119.28100 * 8 7 6 11 11 C 1.34780 * 119.99847 * 87.83818 * 10 8 7 12 12 O 1.21581 * 120.00176 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99966 * 179.97438 * 11 10 8 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47012 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47164 * 300.00256 * 15 14 13 17 17 C 1.52999 * 109.47592 * 59.99962 * 15 14 13 18 18 C 1.50698 * 109.47342 * 180.02562 * 15 14 13 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99989 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00260 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46997 * 90.00238 * 22 20 18 24 24 H 1.48501 * 109.47418 * 210.00367 * 22 20 18 25 25 H 1.48507 * 109.47103 * 330.00231 * 22 20 18 26 26 H 1.08998 * 109.46936 * 299.99778 * 1 2 3 27 27 H 1.08992 * 109.46829 * 59.99485 * 1 2 3 28 28 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 240.00222 * 2 1 3 30 30 H 1.09002 * 109.47524 * 120.00273 * 2 1 3 31 31 H 1.08999 * 110.75586 * 321.69387 * 5 3 2 32 32 H 1.09003 * 110.75811 * 84.87776 * 5 3 2 33 33 H 1.09000 * 110.48684 * 156.62200 * 6 5 3 34 34 H 1.09001 * 110.48708 * 279.26496 * 6 5 3 35 35 H 1.08995 * 110.03748 * 217.10775 * 7 6 5 36 36 H 1.09004 * 110.02913 * 95.66988 * 7 6 5 37 37 H 0.97006 * 120.00388 * 267.83139 * 10 8 7 38 38 H 0.97000 * 119.99708 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 40 40 H 1.09002 * 109.47133 * 299.99829 * 14 13 11 41 41 H 1.09001 * 109.46801 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.46998 * 299.99705 * 16 15 14 43 43 H 1.09000 * 109.47050 * 59.99996 * 16 15 14 44 44 H 1.09000 * 109.47160 * 300.00333 * 17 15 14 45 45 H 1.09002 * 109.46719 * 60.00054 * 17 15 14 46 46 H 1.08993 * 109.47839 * 179.97438 * 17 15 14 47 47 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 0.8087 5 6 1.7579 2.1173 -1.3653 6 6 2.8153 3.2480 -1.4127 7 6 4.0703 2.6197 -0.7723 8 6 3.5773 1.4717 0.1260 9 1 3.8637 1.6572 1.1611 10 7 4.1424 0.1994 -0.3303 11 6 5.3414 -0.2091 0.1301 12 8 5.9543 0.4784 0.9238 13 7 5.8611 -1.3799 -0.2893 14 6 7.1646 -1.8236 0.2107 15 6 7.5199 -3.1723 -0.4182 16 6 6.4531 -4.2047 -0.0478 17 6 7.5805 -3.0254 -1.9399 18 6 8.8605 -3.6292 0.0966 19 1 9.4046 -3.0188 0.8022 20 6 9.3921 -4.8268 -0.3324 21 7 8.7294 -5.5704 -1.1912 22 14 11.0535 -5.3934 0.3063 23 1 10.8610 -6.2041 1.5355 24 1 11.7274 -6.2172 -0.7294 25 1 11.8931 -4.2094 0.6206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9090 1.4126 -2.1830 32 1 0.7483 2.5273 -1.3923 33 1 3.0178 3.5381 -2.4437 34 1 2.4808 4.1078 -0.8322 35 1 4.5958 3.3632 -0.1731 36 1 4.7299 2.2301 -1.5477 37 1 3.6536 -0.3491 -0.9638 38 1 5.3723 -1.9282 -0.9228 39 1 7.1215 -1.9280 1.2949 40 1 7.9247 -1.0884 -0.0536 41 1 6.7065 -5.1656 -0.4955 42 1 6.4099 -4.3095 1.0363 43 1 5.4832 -3.8745 -0.4198 44 1 6.6107 -2.6951 -2.3120 45 1 8.3405 -2.2899 -2.2039 46 1 7.8341 -3.9860 -2.3880 47 1 9.1036 -6.4128 -1.4933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458536005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:49 Heat of formation + Delta-G solvation = -58.391359 kcal Electronic energy + Delta-G solvation = -23221.163327 eV Core-core repulsion = 20016.797172 eV Total energy + Delta-G solvation = -3204.366154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10342 -38.36724 -36.27955 -33.41300 -33.39308 -32.95814 -30.72635 -27.80279 -27.68303 -25.69212 -25.47503 -24.58251 -22.99985 -20.96426 -20.61206 -19.33665 -18.69454 -18.20719 -16.07729 -15.84141 -15.52904 -14.98748 -14.80252 -14.64869 -14.52837 -13.95406 -13.54230 -13.24721 -13.16983 -12.82545 -12.74806 -12.27756 -12.13478 -11.86300 -11.49772 -11.31778 -11.20894 -11.16704 -10.99544 -10.83290 -10.73939 -10.68439 -10.66172 -10.51524 -10.34962 -10.18078 -9.68721 -9.59517 -9.26817 -8.86428 -8.75887 -8.38406 -8.12570 -5.99612 -4.09330 3.19536 3.30165 3.37032 3.41837 3.71687 4.30962 4.41225 4.47591 4.57161 4.81409 5.00281 5.06436 5.13005 5.27162 5.33189 5.38255 5.47465 5.51659 5.53398 5.66915 5.74269 5.80836 5.88006 5.93220 6.07168 6.11986 6.14565 6.26323 6.29468 6.41112 6.54768 6.83251 6.84871 6.86200 6.95923 7.06774 7.15999 7.36915 7.48830 7.59124 7.72597 8.04339 8.15803 8.41758 8.56848 8.90753 9.13905 9.56285 11.01795 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003430 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.363335 B = 8160.231293 C = 8550.564238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.165 3.835 9 H 0.088 0.912 10 N -0.746 5.746 11 C 0.696 3.304 12 O -0.601 6.601 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.504 4.504 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.392 0.608 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.026 0.974 43 H 0.005 0.995 44 H 0.005 0.995 45 H 0.026 0.974 46 H 0.084 0.916 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 11.771 -1.946 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.119 4.119 4 H 0.103 0.897 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.059 3.941 9 H 0.106 0.894 10 N -0.404 5.404 11 C 0.396 3.604 12 O -0.480 6.480 13 N -0.389 5.389 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.045 0.955 46 H 0.103 0.897 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.633 12.205 -1.295 19.876 hybrid contribution 0.500 -0.849 -0.286 1.026 sum -15.133 11.356 -1.581 18.986 Atomic orbital electron populations 1.21781 0.95795 1.01606 1.01668 1.21494 0.95670 0.95851 1.02326 1.22337 0.94376 0.96735 0.98405 0.89707 1.22590 0.98689 0.97571 0.96812 1.22354 0.95369 0.97840 1.00644 1.22635 0.97623 0.97805 0.99432 1.21338 0.91394 0.82493 0.98891 0.89419 1.45369 1.20701 1.23837 1.50456 1.16120 0.81016 0.82007 0.81227 1.90868 1.61646 1.56739 1.38743 1.45506 1.23425 1.20750 1.49191 1.21552 0.80580 0.97326 0.97734 1.18363 0.95070 0.88547 0.92536 1.21812 0.94741 1.03174 0.98936 1.21806 0.96124 1.02457 0.98265 1.20997 1.02548 1.04790 1.25975 0.92431 1.24878 0.97387 0.96413 0.94857 1.69809 1.37821 1.13007 1.31885 0.86575 0.84108 0.78708 0.78499 1.20735 1.21305 1.19894 0.92848 0.92728 0.92786 0.91963 0.91430 0.91425 0.91567 0.91773 0.91701 0.91352 0.91165 0.77271 0.77335 0.93059 0.93076 0.89699 0.95504 0.97573 0.97577 0.95504 0.89702 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.79 37.16 0.36 -0.74 16 2 C -0.12 -0.99 4.47 -26.73 -0.12 -1.11 16 3 C -0.10 -0.87 2.81 -88.96 -0.25 -1.12 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -0.92 5.67 -24.74 -0.14 -1.06 16 6 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 7 C -0.14 -1.52 6.59 -25.61 -0.17 -1.69 16 8 C 0.16 1.95 3.12 -66.81 -0.21 1.74 16 9 H 0.09 1.22 7.56 -51.93 -0.39 0.83 16 10 N -0.75 -9.91 4.35 -57.58 -0.25 -10.16 16 11 C 0.70 12.59 8.56 -86.91 -0.74 11.85 16 12 O -0.60 -13.26 16.00 5.29 0.08 -13.18 16 13 N -0.73 -13.45 4.96 -65.23 -0.32 -13.77 16 14 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 15 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 17 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 18 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 22 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.36 7.55 -51.93 -0.39 -0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 6.41 -51.93 -0.33 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.53 7.97 -51.93 -0.41 0.12 16 32 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.89 7.92 -51.93 -0.41 0.48 16 37 H 0.39 4.34 6.57 -40.82 -0.27 4.07 16 38 H 0.39 6.45 6.18 -40.82 -0.25 6.20 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 47 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -28.93 357.37 -9.32 -38.25 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.42 Total: 6.93 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.30 Total: -6.09 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.06 Total: -47.15 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.93 -9.32 -38.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.141 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds