Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 H 1.09003 * 110.53446 * 52.39229 * 3 2 1 5 5 C 1.54885 * 110.48713 * 289.77876 * 3 2 1 6 6 C 1.54889 * 102.74671 * 203.37844 * 5 3 2 7 7 C 1.54265 * 104.19957 * 37.93991 * 6 5 3 8 8 C 1.53877 * 106.59639 * 336.39086 * 7 6 5 9 9 H 1.08991 * 110.07568 * 240.68826 * 8 7 6 10 10 N 1.46500 * 110.03044 * 119.28100 * 8 7 6 11 11 C 1.34780 * 119.99847 * 87.83818 * 10 8 7 12 12 O 1.21581 * 120.00176 * 359.97438 * 11 10 8 13 13 N 1.34779 * 119.99966 * 179.97438 * 11 10 8 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47012 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47164 * 300.00256 * 15 14 13 17 17 C 1.52999 * 109.47592 * 59.99962 * 15 14 13 18 18 C 1.50698 * 109.47342 * 180.02562 * 15 14 13 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99989 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00260 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46997 * 90.00238 * 22 20 18 24 24 H 1.48501 * 109.47418 * 210.00367 * 22 20 18 25 25 H 1.48507 * 109.47103 * 330.00231 * 22 20 18 26 26 H 1.08998 * 109.46936 * 299.99778 * 1 2 3 27 27 H 1.08992 * 109.46829 * 59.99485 * 1 2 3 28 28 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46936 * 240.00222 * 2 1 3 30 30 H 1.09002 * 109.47524 * 120.00273 * 2 1 3 31 31 H 1.08999 * 110.75586 * 321.69387 * 5 3 2 32 32 H 1.09003 * 110.75811 * 84.87776 * 5 3 2 33 33 H 1.09000 * 110.48684 * 156.62200 * 6 5 3 34 34 H 1.09001 * 110.48708 * 279.26496 * 6 5 3 35 35 H 1.08995 * 110.03748 * 217.10775 * 7 6 5 36 36 H 1.09004 * 110.02913 * 95.66988 * 7 6 5 37 37 H 0.97006 * 120.00388 * 267.83139 * 10 8 7 38 38 H 0.97000 * 119.99708 * 0.02562 * 13 11 10 39 39 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 40 40 H 1.09002 * 109.47133 * 299.99829 * 14 13 11 41 41 H 1.09001 * 109.46801 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.46998 * 299.99705 * 16 15 14 43 43 H 1.09000 * 109.47050 * 59.99996 * 16 15 14 44 44 H 1.09000 * 109.47160 * 300.00333 * 17 15 14 45 45 H 1.09002 * 109.46719 * 60.00054 * 17 15 14 46 46 H 1.08993 * 109.47839 * 179.97438 * 17 15 14 47 47 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0106 0.8087 5 6 1.7579 2.1173 -1.3653 6 6 2.8153 3.2480 -1.4127 7 6 4.0703 2.6197 -0.7723 8 6 3.5773 1.4717 0.1260 9 1 3.8637 1.6572 1.1611 10 7 4.1424 0.1994 -0.3303 11 6 5.3414 -0.2091 0.1301 12 8 5.9543 0.4784 0.9238 13 7 5.8611 -1.3799 -0.2893 14 6 7.1646 -1.8236 0.2107 15 6 7.5199 -3.1723 -0.4182 16 6 6.4531 -4.2047 -0.0478 17 6 7.5805 -3.0254 -1.9399 18 6 8.8605 -3.6292 0.0966 19 1 9.4046 -3.0188 0.8022 20 6 9.3921 -4.8268 -0.3324 21 7 8.7294 -5.5704 -1.1912 22 14 11.0535 -5.3934 0.3063 23 1 10.8610 -6.2041 1.5355 24 1 11.7274 -6.2172 -0.7294 25 1 11.8931 -4.2094 0.6206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9090 1.4126 -2.1830 32 1 0.7483 2.5273 -1.3923 33 1 3.0178 3.5381 -2.4437 34 1 2.4808 4.1078 -0.8322 35 1 4.5958 3.3632 -0.1731 36 1 4.7299 2.2301 -1.5477 37 1 3.6536 -0.3491 -0.9638 38 1 5.3723 -1.9282 -0.9228 39 1 7.1215 -1.9280 1.2949 40 1 7.9247 -1.0884 -0.0536 41 1 6.7065 -5.1656 -0.4955 42 1 6.4099 -4.3095 1.0363 43 1 5.4832 -3.8745 -0.4198 44 1 6.6107 -2.6951 -2.3120 45 1 8.3405 -2.2899 -2.2039 46 1 7.8341 -3.9860 -2.3880 47 1 9.1036 -6.4128 -1.4933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458536005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -74.398123 kcal Electronic energy + Delta-G solvation = -23221.857432 eV Core-core repulsion = 20016.797172 eV Total energy + Delta-G solvation = -3205.060260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34819 -39.54062 -38.02580 -35.01130 -34.43711 -34.03418 -32.54292 -28.73742 -28.48238 -27.55493 -27.38415 -26.32387 -23.69293 -22.35863 -21.38598 -20.62911 -20.17298 -19.65250 -17.78172 -17.22229 -16.74335 -16.42610 -16.25087 -15.92232 -15.33194 -15.18136 -15.04895 -14.72530 -14.52887 -13.99577 -13.91275 -13.83732 -13.20887 -13.09240 -12.96215 -12.73192 -12.60413 -12.58694 -12.26397 -12.20095 -12.12945 -11.91701 -11.75497 -11.48426 -11.47567 -11.40090 -11.32164 -11.23232 -11.10841 -10.69814 -10.39635 -10.22943 -9.61881 -8.01656 -6.17195 1.42981 1.45638 1.54027 1.86283 2.24644 2.46994 3.21872 3.42641 3.57213 3.71453 3.87990 4.27938 4.36606 4.42307 4.44459 4.54176 4.58416 4.62801 4.68579 4.72342 4.80569 4.82158 4.98985 4.99639 5.06846 5.07090 5.10479 5.12239 5.20927 5.22328 5.27644 5.30674 5.38674 5.41005 5.46280 5.56059 5.64481 5.67889 5.68038 5.73326 6.12538 6.15989 6.22853 6.44673 6.86834 7.20557 7.50419 7.69130 8.97301 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030153 B = 0.003430 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.363335 B = 8160.231293 C = 8550.564238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.094 0.906 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.158 3.842 9 H 0.062 0.938 10 N -0.724 5.724 11 C 0.695 3.305 12 O -0.643 6.643 13 N -0.727 5.727 14 C 0.169 3.831 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.529 4.529 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.407 0.593 38 H 0.404 0.596 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 12.274 -2.924 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.112 0.888 5 C -0.150 4.150 6 C -0.155 4.155 7 C -0.175 4.175 8 C 0.053 3.947 9 H 0.080 0.920 10 N -0.382 5.382 11 C 0.395 3.605 12 O -0.526 6.526 13 N -0.382 5.382 14 C 0.044 3.956 15 C 0.051 3.949 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.568 4.568 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.207 1.207 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.241 0.759 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.035 0.965 46 H 0.081 0.919 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.753 12.705 -2.308 21.953 hybrid contribution 1.125 -0.967 0.036 1.484 sum -16.629 11.738 -2.272 20.481 Atomic orbital electron populations 1.21748 0.94424 1.01915 1.02390 1.21485 0.96856 0.95380 1.01643 1.22302 0.91478 0.97346 0.99734 0.88763 1.22582 0.99450 0.97130 0.95800 1.22329 0.93915 0.98319 1.00934 1.22597 0.98808 0.97381 0.98747 1.21529 0.93763 0.81833 0.97615 0.92015 1.45215 1.18918 1.24329 1.49730 1.16260 0.81941 0.81474 0.80856 1.90843 1.63150 1.57864 1.40698 1.45200 1.22400 1.21194 1.49453 1.21088 0.81810 0.96128 0.96534 1.18361 0.94199 0.89300 0.93046 1.21646 0.95969 1.01797 0.98165 1.21641 0.97481 1.00970 0.97479 1.21273 1.04125 1.05161 1.26235 0.93838 1.25443 1.00027 0.96500 0.95127 1.69906 1.38649 1.13036 1.32131 0.85760 0.80893 0.78082 0.78075 1.20476 1.20745 1.20150 0.92583 0.91539 0.92753 0.91537 0.93227 0.91117 0.89501 0.90987 0.90561 0.92442 0.92825 0.75540 0.75941 0.94849 0.94924 0.91876 0.96455 0.94489 0.94506 0.96467 0.91875 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.79 71.98 0.70 -1.03 16 2 C -0.12 -1.72 4.47 30.60 0.14 -1.59 16 3 C -0.09 -1.36 2.81 -9.72 -0.03 -1.39 16 4 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.11 -1.35 5.67 31.88 0.18 -1.17 16 6 C -0.12 -1.68 6.83 31.67 0.22 -1.47 16 7 C -0.14 -2.95 6.59 31.32 0.21 -2.74 16 8 C 0.16 3.62 3.12 45.72 0.14 3.76 16 9 H 0.06 1.76 7.56 -2.39 -0.02 1.74 16 10 N -0.72 -18.55 4.35 -454.35 -1.97 -20.52 16 11 C 0.69 25.02 8.56 179.05 1.53 26.56 16 12 O -0.64 -29.03 16.00 -3.97 -0.06 -29.09 16 13 N -0.73 -26.15 4.96 -478.54 -2.37 -28.52 16 14 C 0.17 7.48 4.50 86.38 0.39 7.87 16 15 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 16 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 17 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 18 C -0.53 -28.45 8.01 25.60 0.21 -28.25 16 19 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 20 C 0.03 1.53 5.15 84.65 0.44 1.97 16 21 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 22 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.64 7.55 -2.39 -0.02 0.62 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.92 6.41 -2.39 -0.02 0.90 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.85 7.97 -2.39 -0.02 0.83 16 32 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.33 7.92 -2.39 -0.02 1.31 16 37 H 0.41 8.16 6.57 -92.70 -0.61 7.55 16 38 H 0.40 12.49 6.18 -92.71 -0.57 11.92 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 44 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 47 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -63.04 357.37 2.84 -60.21 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.24 Total: 25.30 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.26 Total: -4.50 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -4.15 Total: -96.93 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.06 Total: -29.09 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -63.04 2.84 -60.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds