Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47441 * 2 1 4 4 H 1.09001 * 110.01801 * 306.39378 * 3 2 1 5 5 C 1.54267 * 110.03037 * 67.83726 * 3 2 1 6 6 C 1.54887 * 104.20003 * 142.89737 * 5 3 2 7 7 C 1.54895 * 102.74587 * 322.05879 * 6 5 3 8 8 C 1.53874 * 110.03702 * 185.00006 * 3 2 1 9 9 H 1.09005 * 110.03290 * 121.38143 * 8 3 2 10 10 N 1.46502 * 110.03223 * 0.02562 * 8 3 2 11 11 C 1.34773 * 120.00573 * 154.99887 * 10 8 3 12 12 O 1.21590 * 119.99697 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00526 * 180.02562 * 11 10 8 14 14 C 1.46501 * 120.00577 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47367 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47306 * 300.00158 * 15 14 13 17 17 C 1.52997 * 109.46968 * 60.00290 * 15 14 13 18 18 C 1.50698 * 109.46969 * 179.97438 * 15 14 13 19 19 H 1.08008 * 120.00170 * 1.35312 * 18 15 14 20 20 C 1.37876 * 120.00070 * 181.34910 * 18 15 14 21 21 N 1.31521 * 120.00231 * 193.98452 * 20 18 15 22 22 Si 1.86801 * 120.00016 * 13.97870 * 20 18 15 23 23 H 1.48494 * 109.47322 * 84.54800 * 22 20 18 24 24 H 1.48504 * 109.47135 * 204.55088 * 22 20 18 25 25 H 1.48504 * 109.46710 * 324.54742 * 22 20 18 26 26 H 1.09001 * 109.47422 * 59.99528 * 1 2 3 27 27 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47277 * 299.99594 * 1 2 3 29 29 H 1.09007 * 109.47277 * 240.00406 * 2 1 3 30 30 H 1.09001 * 109.47422 * 120.00472 * 2 1 3 31 31 H 1.09008 * 110.48708 * 261.57511 * 5 3 2 32 32 H 1.09002 * 110.48779 * 24.21691 * 5 3 2 33 33 H 1.09005 * 110.75708 * 80.36667 * 6 5 3 34 34 H 1.09001 * 110.75960 * 203.56330 * 6 5 3 35 35 H 1.09003 * 110.48478 * 279.26167 * 7 6 5 36 36 H 1.08994 * 110.48746 * 156.62199 * 7 6 5 37 37 H 0.97001 * 119.99491 * 334.99404 * 10 8 3 38 38 H 0.97005 * 120.00086 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.46806 * 300.00226 * 14 13 11 40 40 H 1.09001 * 109.47061 * 59.99624 * 14 13 11 41 41 H 1.08994 * 109.47348 * 69.36816 * 16 15 14 42 42 H 1.09001 * 109.46962 * 189.36877 * 16 15 14 43 43 H 1.09004 * 109.46970 * 309.36872 * 16 15 14 44 44 H 1.09007 * 109.47135 * 59.99662 * 17 15 14 45 45 H 1.08997 * 109.47192 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.47293 * 300.00073 * 17 15 14 47 47 H 0.96996 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7006 2.1229 1.3423 6 6 2.9289 3.0200 1.6347 7 6 4.1125 2.1495 1.1440 8 6 3.5734 1.4594 -0.1260 9 1 3.8691 2.0219 -1.0116 10 7 4.0853 0.0892 -0.2088 11 6 5.2676 -0.1535 -0.8087 12 8 5.9091 0.7647 -1.2816 13 7 5.7382 -1.4140 -0.8853 14 6 7.0230 -1.6779 -1.5378 15 6 7.3218 -3.1776 -1.4881 16 6 7.3865 -3.6367 -0.0301 17 6 6.2141 -3.9426 -2.2150 18 6 8.6432 -3.4491 -2.1600 19 1 9.2232 -2.6310 -2.5610 20 6 9.1117 -4.7417 -2.2626 21 7 10.3659 -4.9625 -2.5912 22 14 7.9651 -6.1795 -1.9348 23 1 7.2049 -6.4981 -3.1701 24 1 8.7612 -7.3639 -1.5242 25 1 7.0176 -5.8195 -0.8495 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.7999 2.7291 1.2457 32 1 1.5773 1.3771 2.1276 33 1 2.8722 3.9494 1.0680 34 1 3.0127 3.2244 2.7021 35 1 4.3787 1.4080 1.8973 36 1 4.9718 2.7750 0.9028 37 1 3.5733 -0.6434 0.1682 38 1 5.2262 -2.1467 -0.5083 39 1 6.9770 -1.3504 -2.5764 40 1 7.8123 -1.1332 -1.0198 41 1 6.3894 -3.5962 0.4082 42 1 7.7608 -4.6596 0.0124 43 1 8.0556 -2.9815 0.5277 44 1 6.1679 -3.6155 -3.2538 45 1 6.4271 -5.0110 -2.1801 46 1 5.2581 -3.7463 -1.7296 47 1 10.6954 -5.8719 -2.6638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458536007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -35.170052 kcal Electronic energy + Delta-G solvation = -23290.877830 eV Core-core repulsion = 20087.518627 eV Total energy + Delta-G solvation = -3203.359203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22183 -38.54114 -36.65561 -33.60408 -33.39315 -33.04197 -31.39428 -27.81290 -27.80964 -26.37496 -25.58287 -24.68078 -23.24840 -21.07975 -20.76753 -19.34943 -18.98238 -18.18004 -16.23310 -16.05019 -15.81039 -15.22938 -15.09088 -14.75722 -14.61603 -13.94837 -13.82327 -13.42765 -13.22660 -12.92455 -12.83240 -12.59151 -12.40394 -12.19355 -12.03207 -11.96634 -11.59419 -11.28036 -11.20892 -11.08265 -10.84269 -10.71200 -10.61911 -10.40443 -10.27788 -10.15432 -10.04489 -9.75674 -9.11467 -8.94243 -8.67095 -8.46809 -8.28800 -6.13285 -4.10299 3.08185 3.24748 3.31694 3.39248 3.60777 4.27507 4.36665 4.40819 4.47353 4.69787 4.91909 4.97091 5.04971 5.17544 5.26214 5.35317 5.38818 5.45371 5.45887 5.57063 5.69351 5.71693 5.78750 5.82361 5.85765 5.96388 6.06092 6.09481 6.10677 6.12339 6.17848 6.37419 6.48315 6.56122 6.64756 6.73350 6.74274 6.86284 7.03254 7.24136 7.31938 7.45953 7.74986 8.37937 8.50134 8.92358 9.01847 9.50698 10.99892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.003689 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.847533 B = 7588.231043 C = 8158.718690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.099 4.099 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.135 4.135 8 C 0.164 3.836 9 H 0.089 0.911 10 N -0.749 5.749 11 C 0.697 3.303 12 O -0.596 6.596 13 N -0.740 5.740 14 C 0.161 3.839 15 C 0.028 3.972 16 C -0.140 4.140 17 C -0.146 4.146 18 C -0.512 4.512 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.892 5.892 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.306 1.306 25 H -0.249 1.249 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.390 0.610 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.028 0.972 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 10.209 8.863 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.118 4.118 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.174 4.174 8 C 0.058 3.942 9 H 0.108 0.892 10 N -0.407 5.407 11 C 0.397 3.603 12 O -0.475 6.475 13 N -0.394 5.394 14 C 0.038 3.962 15 C 0.027 3.973 16 C -0.198 4.198 17 C -0.203 4.203 18 C -0.550 4.550 19 H 0.095 0.905 20 C -0.128 4.128 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.176 1.176 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.704 10.911 8.354 24.022 hybrid contribution -0.949 -1.644 0.395 1.939 sum -20.653 9.266 8.748 24.268 Atomic orbital electron populations 1.21774 0.95591 1.01631 1.01812 1.21613 0.96065 0.96251 1.02161 1.22085 0.94456 0.96707 0.98594 0.90146 1.22442 0.97950 0.98594 0.96507 1.22470 0.94702 0.98215 1.00917 1.22816 0.98133 0.99070 0.97388 1.21394 0.91739 0.82183 0.98855 0.89241 1.45512 1.22054 1.09462 1.63669 1.16099 0.81164 0.83854 0.79200 1.90891 1.59269 1.43647 1.53684 1.45499 1.24794 1.06246 1.62863 1.21349 0.81465 0.97102 0.96287 1.18727 0.95491 0.90052 0.93028 1.22276 0.98037 1.01677 0.97774 1.22343 0.97328 0.99754 1.00855 1.20729 1.01741 0.94340 1.38188 0.90515 1.24974 0.94569 0.98790 0.94424 1.69955 1.13693 1.21147 1.48044 0.87288 0.80409 0.81412 0.79014 1.21396 1.23443 1.17557 0.92747 0.92774 0.92665 0.91191 0.91797 0.91644 0.91429 0.91400 0.91535 0.91274 0.91080 0.76979 0.77557 0.92275 0.92180 0.96043 0.92622 0.93426 0.92819 0.94142 0.95257 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.77 37.15 0.36 -0.63 16 2 C -0.12 -0.93 3.93 -26.74 -0.11 -1.04 16 3 C -0.10 -0.81 2.93 -89.50 -0.26 -1.08 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -0.83 5.53 -25.07 -0.14 -0.97 16 6 C -0.13 -0.99 6.91 -24.74 -0.17 -1.16 16 7 C -0.14 -1.43 6.53 -25.07 -0.16 -1.59 16 8 C 0.16 1.84 3.23 -66.81 -0.22 1.62 16 9 H 0.09 1.20 7.56 -51.93 -0.39 0.80 16 10 N -0.75 -9.28 4.39 -57.58 -0.25 -9.53 16 11 C 0.70 11.86 8.56 -86.93 -0.74 11.12 16 12 O -0.60 -12.64 16.00 5.29 0.08 -12.56 16 13 N -0.74 -12.44 5.01 -65.23 -0.33 -12.76 16 14 C 0.16 3.31 4.49 -4.04 -0.02 3.29 16 15 C 0.03 0.62 0.50 -155.67 -0.08 0.54 16 16 C -0.14 -2.87 7.53 37.16 0.28 -2.59 16 17 C -0.15 -2.97 7.52 37.16 0.28 -2.69 16 18 C -0.51 -13.87 8.62 -34.44 -0.30 -14.17 16 19 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 20 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 21 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 22 Si 0.89 21.17 22.79 -169.99 -3.87 17.29 16 23 H -0.29 -6.82 7.10 56.52 0.40 -6.41 16 24 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.25 -5.41 4.65 56.52 0.26 -5.15 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 7.51 -51.92 -0.39 -0.06 16 29 H 0.07 0.60 7.42 -51.92 -0.39 0.22 16 30 H 0.06 0.46 7.11 -51.93 -0.37 0.09 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.47 7.76 -51.93 -0.40 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.39 3.94 5.91 -40.82 -0.24 3.70 16 38 H 0.39 5.66 6.27 -40.82 -0.26 5.40 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 42 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 43 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 46 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -31.28 346.35 -8.01 -39.28 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.26 Total: 6.44 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.37 Total: -7.35 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.19 Total: -48.32 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.28 -8.01 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.112 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds