Wall clock time and date at job start Tue Mar 31 2020 05:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52997 * 109.47441 * 2 1 4 4 H 1.09001 * 110.01801 * 306.39378 * 3 2 1 5 5 C 1.54267 * 110.03037 * 67.83726 * 3 2 1 6 6 C 1.54887 * 104.20003 * 142.89737 * 5 3 2 7 7 C 1.54895 * 102.74587 * 322.05879 * 6 5 3 8 8 C 1.53874 * 110.03702 * 185.00006 * 3 2 1 9 9 H 1.09005 * 110.03290 * 121.38143 * 8 3 2 10 10 N 1.46502 * 110.03223 * 0.02562 * 8 3 2 11 11 C 1.34773 * 120.00573 * 154.99887 * 10 8 3 12 12 O 1.21590 * 119.99697 * 359.97438 * 11 10 8 13 13 N 1.34769 * 120.00526 * 180.02562 * 11 10 8 14 14 C 1.46501 * 120.00577 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47367 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47306 * 300.00158 * 15 14 13 17 17 C 1.52997 * 109.46968 * 60.00290 * 15 14 13 18 18 C 1.50698 * 109.46969 * 179.97438 * 15 14 13 19 19 H 1.08008 * 120.00170 * 1.35312 * 18 15 14 20 20 C 1.37876 * 120.00070 * 181.34910 * 18 15 14 21 21 N 1.31521 * 120.00231 * 193.98452 * 20 18 15 22 22 Si 1.86801 * 120.00016 * 13.97870 * 20 18 15 23 23 H 1.48494 * 109.47322 * 84.54800 * 22 20 18 24 24 H 1.48504 * 109.47135 * 204.55088 * 22 20 18 25 25 H 1.48504 * 109.46710 * 324.54742 * 22 20 18 26 26 H 1.09001 * 109.47422 * 59.99528 * 1 2 3 27 27 H 1.09002 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47277 * 299.99594 * 1 2 3 29 29 H 1.09007 * 109.47277 * 240.00406 * 2 1 3 30 30 H 1.09001 * 109.47422 * 120.00472 * 2 1 3 31 31 H 1.09008 * 110.48708 * 261.57511 * 5 3 2 32 32 H 1.09002 * 110.48779 * 24.21691 * 5 3 2 33 33 H 1.09005 * 110.75708 * 80.36667 * 6 5 3 34 34 H 1.09001 * 110.75960 * 203.56330 * 6 5 3 35 35 H 1.09003 * 110.48478 * 279.26167 * 7 6 5 36 36 H 1.08994 * 110.48746 * 156.62199 * 7 6 5 37 37 H 0.97001 * 119.99491 * 334.99404 * 10 8 3 38 38 H 0.97005 * 120.00086 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.46806 * 300.00226 * 14 13 11 40 40 H 1.09001 * 109.47061 * 59.99624 * 14 13 11 41 41 H 1.08994 * 109.47348 * 69.36816 * 16 15 14 42 42 H 1.09001 * 109.46962 * 189.36877 * 16 15 14 43 43 H 1.09004 * 109.46970 * 309.36872 * 16 15 14 44 44 H 1.09007 * 109.47135 * 59.99662 * 17 15 14 45 45 H 1.08997 * 109.47192 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.47293 * 300.00073 * 17 15 14 47 47 H 0.96996 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7006 2.1229 1.3423 6 6 2.9289 3.0200 1.6347 7 6 4.1125 2.1495 1.1440 8 6 3.5734 1.4594 -0.1260 9 1 3.8691 2.0219 -1.0116 10 7 4.0853 0.0892 -0.2088 11 6 5.2676 -0.1535 -0.8087 12 8 5.9091 0.7647 -1.2816 13 7 5.7382 -1.4140 -0.8853 14 6 7.0230 -1.6779 -1.5378 15 6 7.3218 -3.1776 -1.4881 16 6 7.3865 -3.6367 -0.0301 17 6 6.2141 -3.9426 -2.2150 18 6 8.6432 -3.4491 -2.1600 19 1 9.2232 -2.6310 -2.5610 20 6 9.1117 -4.7417 -2.2626 21 7 10.3659 -4.9625 -2.5912 22 14 7.9651 -6.1795 -1.9348 23 1 7.2049 -6.4981 -3.1701 24 1 8.7612 -7.3639 -1.5242 25 1 7.0176 -5.8195 -0.8495 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.7999 2.7291 1.2457 32 1 1.5773 1.3771 2.1276 33 1 2.8722 3.9494 1.0680 34 1 3.0127 3.2244 2.7021 35 1 4.3787 1.4080 1.8973 36 1 4.9718 2.7750 0.9028 37 1 3.5733 -0.6434 0.1682 38 1 5.2262 -2.1467 -0.5083 39 1 6.9770 -1.3504 -2.5764 40 1 7.8123 -1.1332 -1.0198 41 1 6.3894 -3.5962 0.4082 42 1 7.7608 -4.6596 0.0124 43 1 8.0556 -2.9815 0.5277 44 1 6.1679 -3.6155 -3.2538 45 1 6.4271 -5.0110 -2.1801 46 1 5.2581 -3.7463 -1.7296 47 1 10.6954 -5.8719 -2.6638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458536007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:51 Heat of formation + Delta-G solvation = -56.235957 kcal Electronic energy + Delta-G solvation = -23291.791316 eV Core-core repulsion = 20087.518627 eV Total energy + Delta-G solvation = -3204.272689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39280 -39.65554 -38.28755 -35.04341 -34.52660 -34.02019 -33.25975 -28.83469 -28.45181 -28.00893 -27.26345 -26.54825 -23.87822 -22.32351 -21.56842 -20.94796 -19.99900 -19.56591 -18.04783 -17.26035 -17.14211 -16.58936 -16.38098 -15.91419 -15.44716 -15.24704 -15.12902 -14.80894 -14.58311 -14.36782 -14.04881 -13.96887 -13.74709 -13.54437 -13.16288 -12.97447 -12.62943 -12.38578 -12.20998 -12.13315 -11.94982 -11.87439 -11.81636 -11.75611 -11.50394 -11.36835 -11.29739 -11.24976 -11.04319 -10.61125 -10.39079 -10.25658 -9.65211 -8.29548 -6.31472 1.37248 1.38615 1.51914 1.81920 2.22785 2.35590 3.06373 3.39216 3.59392 3.71589 3.87412 4.08551 4.28682 4.33919 4.35218 4.42086 4.42592 4.54956 4.59048 4.71954 4.75956 4.80037 4.83095 4.84389 4.86927 4.94978 4.97169 5.06879 5.07119 5.13444 5.18823 5.22031 5.26197 5.29037 5.39224 5.44970 5.47486 5.52459 5.57829 5.70557 5.74875 5.80857 6.09766 6.32022 6.72832 7.19480 7.33325 7.67689 8.87853 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.003689 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.847533 B = 7588.231043 C = 8158.718690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.091 4.091 4 H 0.083 0.917 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.158 3.842 9 H 0.061 0.939 10 N -0.726 5.726 11 C 0.695 3.305 12 O -0.643 6.643 13 N -0.727 5.727 14 C 0.178 3.822 15 C 0.029 3.971 16 C -0.139 4.139 17 C -0.145 4.145 18 C -0.519 4.519 19 H 0.026 0.974 20 C 0.016 3.984 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.281 1.281 24 H -0.315 1.315 25 H -0.202 1.202 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.410 0.590 38 H 0.407 0.593 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.045 0.955 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.843 9.405 11.049 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.111 4.111 4 H 0.101 0.899 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.175 4.175 8 C 0.053 3.947 9 H 0.080 0.920 10 N -0.385 5.385 11 C 0.394 3.606 12 O -0.525 6.525 13 N -0.383 5.383 14 C 0.053 3.947 15 C 0.027 3.973 16 C -0.196 4.196 17 C -0.202 4.202 18 C -0.557 4.557 19 H 0.044 0.956 20 C -0.182 4.182 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.245 1.245 25 H -0.126 1.126 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.133 10.114 10.584 28.226 hybrid contribution 0.478 -1.232 -0.326 1.361 sum -23.655 8.882 10.258 27.271 Atomic orbital electron populations 1.21746 0.94518 1.02047 1.02216 1.21607 0.96985 0.95397 1.02085 1.22046 0.91595 0.97744 0.99674 0.89880 1.22427 0.97947 0.98635 0.95719 1.22453 0.93725 0.97969 1.01578 1.22775 0.98546 0.99156 0.97004 1.21547 0.94110 0.81022 0.98066 0.92033 1.45351 1.20284 1.10724 1.62095 1.16265 0.82003 0.83144 0.79140 1.90870 1.60925 1.45043 1.55664 1.45097 1.23556 1.06921 1.62692 1.20847 0.82672 0.96067 0.95096 1.18650 0.93537 0.91044 0.94043 1.22195 1.00537 1.00618 0.96239 1.22273 0.98451 0.98720 1.00722 1.21040 1.03738 0.93057 1.37912 0.95594 1.25888 0.95954 1.02010 0.94310 1.70121 1.16227 1.21798 1.50514 0.86301 0.78883 0.76733 0.80500 1.20875 1.24462 1.12610 0.92925 0.92393 0.91719 0.92233 0.90843 0.89971 0.90488 0.91169 0.90345 0.91428 0.93506 0.75031 0.75575 0.94448 0.94692 0.91508 0.93575 0.94251 0.93619 0.94632 0.90728 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.77 71.98 0.70 -0.72 16 2 C -0.12 -1.44 3.93 30.59 0.12 -1.32 16 3 C -0.09 -1.26 2.93 -10.07 -0.03 -1.29 16 4 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.11 -1.17 5.53 31.67 0.18 -0.99 16 6 C -0.12 -1.61 6.91 31.89 0.22 -1.39 16 7 C -0.14 -2.75 6.53 31.67 0.21 -2.54 16 8 C 0.16 3.36 3.23 45.71 0.15 3.51 16 9 H 0.06 1.68 7.56 -2.38 -0.02 1.66 16 10 N -0.73 -16.66 4.39 -454.36 -2.00 -18.65 16 11 C 0.69 23.08 8.56 179.06 1.53 24.62 16 12 O -0.64 -27.92 16.00 -4.00 -0.06 -27.99 16 13 N -0.73 -23.08 5.01 -478.55 -2.40 -25.47 16 14 C 0.18 7.37 4.49 86.38 0.39 7.75 16 15 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 16 C -0.14 -5.26 7.53 71.98 0.54 -4.72 16 17 C -0.14 -5.42 7.52 71.98 0.54 -4.88 16 18 C -0.52 -29.08 8.62 25.60 0.22 -28.86 16 19 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 20 C 0.02 0.89 5.32 84.65 0.45 1.34 16 21 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 22 Si 0.95 42.73 22.79 68.60 1.56 44.29 16 23 H -0.28 -12.44 7.10 99.48 0.71 -11.74 16 24 H -0.32 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.20 -7.63 4.65 99.48 0.46 -7.17 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.51 7.51 -2.38 -0.02 0.50 16 29 H 0.06 0.84 7.42 -2.38 -0.02 0.82 16 30 H 0.07 0.73 7.11 -2.39 -0.02 0.72 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.72 7.76 -2.39 -0.02 0.70 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 6.82 5.91 -92.71 -0.55 6.27 16 38 H 0.41 10.07 6.27 -92.70 -0.58 9.49 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.93 7.13 -2.39 -0.02 1.91 16 42 H 0.05 1.84 4.30 -2.39 -0.01 1.83 16 43 H 0.04 1.54 8.12 -2.38 -0.02 1.52 16 44 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.04 1.38 2.25 -2.39 -0.01 1.37 16 46 H 0.07 2.11 6.86 -2.39 -0.02 2.09 16 47 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.76 346.35 2.18 -70.58 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.42 Total: 24.55 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.19 Total: -8.29 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.09 Total: -103.13 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.99 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.56 Total: 44.29 kcal Total: -72.76 2.18 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.341 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds