Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 H 1.09004 * 110.53455 * 307.60805 * 3 2 1 5 5 C 1.54878 * 110.48917 * 70.22491 * 3 2 1 6 6 C 1.54893 * 102.75279 * 156.62247 * 5 3 2 7 7 C 1.54266 * 104.19311 * 322.06115 * 6 5 3 8 8 C 1.53873 * 106.60076 * 23.60602 * 7 6 5 9 9 H 1.08995 * 110.03272 * 240.67026 * 8 7 6 10 10 N 1.46499 * 110.03451 * 119.28488 * 8 7 6 11 11 C 1.34779 * 119.99821 * 86.45184 * 10 8 7 12 12 O 1.21589 * 120.00070 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99739 * 180.02562 * 11 10 8 14 14 C 1.46500 * 119.99650 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47364 * 59.99711 * 15 14 13 17 17 C 1.52997 * 109.46766 * 299.99395 * 15 14 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00131 * 1.33726 * 18 15 14 20 20 C 1.37879 * 119.99984 * 181.34727 * 18 15 14 21 21 N 1.31512 * 120.00174 * 193.97472 * 20 18 15 22 22 Si 1.86801 * 120.00070 * 13.97003 * 20 18 15 23 23 H 1.48499 * 109.46778 * 84.55082 * 22 20 18 24 24 H 1.48498 * 109.47004 * 204.55112 * 22 20 18 25 25 H 1.48504 * 109.46813 * 324.55405 * 22 20 18 26 26 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46837 * 300.00271 * 1 2 3 28 28 H 1.08992 * 109.47286 * 59.99989 * 1 2 3 29 29 H 1.09003 * 109.47390 * 240.00182 * 2 1 3 30 30 H 1.09000 * 109.47328 * 119.99712 * 2 1 3 31 31 H 1.09001 * 110.76159 * 38.30855 * 5 3 2 32 32 H 1.09008 * 110.91526 * 275.01240 * 5 3 2 33 33 H 1.08992 * 110.48976 * 203.37719 * 6 5 3 34 34 H 1.08999 * 110.48300 * 80.73145 * 6 5 3 35 35 H 1.09001 * 110.03021 * 264.32046 * 7 6 5 36 36 H 1.09004 * 110.07455 * 142.91468 * 7 6 5 37 37 H 0.96998 * 119.99937 * 266.45837 * 10 8 7 38 38 H 0.96993 * 120.00526 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47305 * 59.99412 * 14 13 11 40 40 H 1.09005 * 109.46996 * 299.99524 * 14 13 11 41 41 H 1.08995 * 109.47026 * 300.00083 * 16 15 14 42 42 H 1.09005 * 109.47413 * 60.00220 * 16 15 14 43 43 H 1.09003 * 109.47134 * 179.97438 * 16 15 14 44 44 H 1.09007 * 109.47260 * 189.37180 * 17 15 14 45 45 H 1.09000 * 109.47421 * 309.37265 * 17 15 14 46 46 H 1.09002 * 109.47279 * 69.37095 * 17 15 14 47 47 H 0.96999 * 120.00280 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 -0.8087 5 6 1.7579 2.1173 1.3652 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6197 0.7722 8 6 3.5772 1.4717 -0.1261 9 1 3.9984 0.5253 0.2129 10 7 3.9620 1.7223 -1.5172 11 6 5.1729 1.3321 -1.9622 12 8 5.9458 0.7717 -1.2092 13 7 5.5271 1.5630 -3.2419 14 6 6.8431 1.1384 -3.7257 15 6 6.9911 1.5179 -5.2005 16 6 6.8566 3.0343 -5.3529 17 6 5.8992 0.8244 -6.0176 18 6 8.3446 1.0805 -5.6984 19 1 9.0221 0.5625 -5.0358 20 6 8.7180 1.3419 -6.9996 21 7 9.7625 0.7344 -7.5187 22 14 7.7401 2.5587 -8.0255 23 1 8.2212 3.9366 -7.7510 24 1 7.9210 2.2491 -9.4665 25 1 6.3007 2.4578 -7.6744 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9091 1.4126 2.1830 32 1 0.7494 2.5299 1.3944 33 1 3.0177 3.5382 2.4436 34 1 2.4806 4.1078 0.8322 35 1 4.7299 2.2303 1.5475 36 1 4.5965 3.3629 0.1731 37 1 3.3454 2.1691 -2.1180 38 1 4.9108 2.0104 -3.8426 39 1 6.9391 0.0581 -3.6167 40 1 7.6210 1.6328 -3.1439 41 1 5.8775 3.3502 -4.9929 42 1 7.6346 3.5284 -4.7707 43 1 6.9626 3.3047 -6.4035 44 1 6.1008 0.9577 -7.0805 45 1 5.8883 -0.2394 -5.7805 46 1 4.9306 1.2608 -5.7740 47 1 10.0250 0.9179 -8.4343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458536009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -43.680742 kcal Electronic energy + Delta-G solvation = -23092.070052 eV Core-core repulsion = 19888.341797 eV Total energy + Delta-G solvation = -3203.728254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.07862 -38.50201 -36.67187 -33.80544 -33.33852 -32.92325 -31.39473 -27.85809 -27.82611 -26.37623 -25.61442 -24.71342 -22.81909 -21.26578 -20.29404 -19.97554 -19.12660 -17.89915 -16.57672 -16.06378 -15.53443 -15.24615 -14.88658 -14.81987 -14.61121 -13.88021 -13.59202 -13.43549 -13.27869 -13.19059 -12.88897 -12.59233 -12.22500 -12.20386 -12.06691 -11.99578 -11.67927 -11.25680 -11.23167 -11.03849 -10.87713 -10.67329 -10.65090 -10.40628 -10.28105 -10.15507 -10.04672 -9.75998 -9.11528 -8.95619 -8.67197 -8.47144 -8.29313 -6.13438 -4.10485 3.06876 3.24674 3.31645 3.39165 3.59869 4.25108 4.36546 4.41450 4.51020 4.70527 4.92100 5.02275 5.09763 5.17425 5.25779 5.31129 5.39818 5.42599 5.47978 5.58204 5.68551 5.78097 5.78897 5.86014 5.87088 5.99393 6.06380 6.08366 6.10695 6.11438 6.20979 6.37333 6.48041 6.56018 6.64574 6.73148 6.74804 6.86060 7.03001 7.23911 7.31451 7.45821 7.74842 8.37691 8.49952 8.92208 9.01075 9.50531 10.99741 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029938 B = 0.003415 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.048624 B = 8197.340742 C = 8381.858799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.097 4.097 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.165 3.835 9 H 0.090 0.910 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.596 6.596 13 N -0.739 5.739 14 C 0.161 3.839 15 C 0.029 3.971 16 C -0.146 4.146 17 C -0.140 4.140 18 C -0.513 4.513 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.892 5.892 22 Si 0.886 3.114 23 H -0.286 1.286 24 H -0.306 1.306 25 H -0.249 1.249 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.391 0.609 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.021 0.979 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 4.173 14.270 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.116 4.116 4 H 0.097 0.903 5 C -0.155 4.155 6 C -0.162 4.162 7 C -0.176 4.176 8 C 0.059 3.941 9 H 0.108 0.892 10 N -0.403 5.403 11 C 0.398 3.602 12 O -0.474 6.474 13 N -0.394 5.394 14 C 0.038 3.962 15 C 0.027 3.973 16 C -0.203 4.203 17 C -0.198 4.198 18 C -0.550 4.550 19 H 0.095 0.905 20 C -0.127 4.127 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.175 1.175 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.225 0.775 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.040 0.960 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.860 3.591 14.793 24.237 hybrid contribution -0.881 1.190 -1.317 1.982 sum -19.740 4.781 13.476 24.375 Atomic orbital electron populations 1.21772 0.95793 1.01554 1.01700 1.21569 0.95793 0.95668 1.02482 1.22301 0.94309 0.96677 0.98340 0.90295 1.22531 0.98822 0.97526 0.96586 1.22358 0.95356 0.97854 1.00653 1.22612 0.97548 0.98109 0.99284 1.21452 0.93223 0.98992 0.80421 0.89198 1.45316 1.16916 1.65528 1.12535 1.16073 0.81901 0.79530 0.82705 1.90895 1.51940 1.48484 1.56096 1.45504 1.20239 1.63966 1.09681 1.21352 0.80694 0.99156 0.95008 1.18724 0.96508 0.91521 0.90519 1.22342 0.98918 0.98996 1.00032 1.22278 0.96281 1.00051 1.01151 1.20733 0.98760 1.38268 0.97288 0.90507 1.24972 0.94974 0.95544 0.97248 1.69950 1.27337 1.40629 1.14922 0.87289 0.81541 0.81515 0.77798 1.21393 1.23433 1.17548 0.92847 0.92704 0.92845 0.91696 0.91705 0.91156 0.91418 0.91696 0.91757 0.91267 0.91238 0.77549 0.77504 0.92175 0.92292 0.95245 0.92829 0.94139 0.92628 0.93427 0.96040 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.79 37.15 0.36 -0.66 16 2 C -0.12 -0.95 5.28 -26.73 -0.14 -1.09 16 3 C -0.10 -0.79 2.55 -88.96 -0.23 -1.02 16 4 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 5 C -0.12 -0.83 5.67 -24.74 -0.14 -0.97 16 6 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 7 C -0.14 -1.45 6.59 -25.61 -0.17 -1.62 16 8 C 0.16 1.83 2.80 -66.81 -0.19 1.65 16 9 H 0.09 1.20 7.30 -51.93 -0.38 0.83 16 10 N -0.75 -9.19 5.00 -57.58 -0.29 -9.48 16 11 C 0.70 11.83 8.55 -86.92 -0.74 11.09 16 12 O -0.60 -12.61 16.02 5.29 0.08 -12.53 16 13 N -0.74 -12.39 5.01 -65.22 -0.33 -12.72 16 14 C 0.16 3.31 4.49 -4.04 -0.02 3.29 16 15 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 16 C -0.15 -2.98 7.52 37.15 0.28 -2.70 16 17 C -0.14 -2.87 7.53 37.16 0.28 -2.59 16 18 C -0.51 -13.90 8.62 -34.44 -0.30 -14.19 16 19 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 21 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 22 Si 0.89 21.17 22.79 -169.99 -3.87 17.30 16 23 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 24 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.25 -5.41 4.65 56.52 0.26 -5.15 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.33 7.56 -51.93 -0.39 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 31 H 0.07 0.49 7.97 -51.93 -0.41 0.08 16 32 H 0.07 0.41 8.06 -51.92 -0.42 0.00 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 37 H 0.39 3.78 8.36 -40.82 -0.34 3.44 16 38 H 0.39 5.63 6.27 -40.82 -0.26 5.38 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 44 H 0.05 1.21 4.30 -51.92 -0.22 0.99 16 45 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 46 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -31.35 351.09 -8.10 -39.45 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.42 Total: 6.15 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.34 Total: -7.42 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.16 Total: -48.24 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.35 -8.10 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds