Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 H 1.09004 * 110.53455 * 307.60805 * 3 2 1 5 5 C 1.54878 * 110.48917 * 70.22491 * 3 2 1 6 6 C 1.54893 * 102.75279 * 156.62247 * 5 3 2 7 7 C 1.54266 * 104.19311 * 322.06115 * 6 5 3 8 8 C 1.53873 * 106.60076 * 23.60602 * 7 6 5 9 9 H 1.08995 * 110.03272 * 240.67026 * 8 7 6 10 10 N 1.46499 * 110.03451 * 119.28488 * 8 7 6 11 11 C 1.34779 * 119.99821 * 86.45184 * 10 8 7 12 12 O 1.21589 * 120.00070 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99739 * 180.02562 * 11 10 8 14 14 C 1.46500 * 119.99650 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47364 * 59.99711 * 15 14 13 17 17 C 1.52997 * 109.46766 * 299.99395 * 15 14 13 18 18 C 1.50701 * 109.46996 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00131 * 1.33726 * 18 15 14 20 20 C 1.37879 * 119.99984 * 181.34727 * 18 15 14 21 21 N 1.31512 * 120.00174 * 193.97472 * 20 18 15 22 22 Si 1.86801 * 120.00070 * 13.97003 * 20 18 15 23 23 H 1.48499 * 109.46778 * 84.55082 * 22 20 18 24 24 H 1.48498 * 109.47004 * 204.55112 * 22 20 18 25 25 H 1.48504 * 109.46813 * 324.55405 * 22 20 18 26 26 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46837 * 300.00271 * 1 2 3 28 28 H 1.08992 * 109.47286 * 59.99989 * 1 2 3 29 29 H 1.09003 * 109.47390 * 240.00182 * 2 1 3 30 30 H 1.09000 * 109.47328 * 119.99712 * 2 1 3 31 31 H 1.09001 * 110.76159 * 38.30855 * 5 3 2 32 32 H 1.09008 * 110.91526 * 275.01240 * 5 3 2 33 33 H 1.08992 * 110.48976 * 203.37719 * 6 5 3 34 34 H 1.08999 * 110.48300 * 80.73145 * 6 5 3 35 35 H 1.09001 * 110.03021 * 264.32046 * 7 6 5 36 36 H 1.09004 * 110.07455 * 142.91468 * 7 6 5 37 37 H 0.96998 * 119.99937 * 266.45837 * 10 8 7 38 38 H 0.96993 * 120.00526 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47305 * 59.99412 * 14 13 11 40 40 H 1.09005 * 109.46996 * 299.99524 * 14 13 11 41 41 H 1.08995 * 109.47026 * 300.00083 * 16 15 14 42 42 H 1.09005 * 109.47413 * 60.00220 * 16 15 14 43 43 H 1.09003 * 109.47134 * 179.97438 * 16 15 14 44 44 H 1.09007 * 109.47260 * 189.37180 * 17 15 14 45 45 H 1.09000 * 109.47421 * 309.37265 * 17 15 14 46 46 H 1.09002 * 109.47279 * 69.37095 * 17 15 14 47 47 H 0.96999 * 120.00280 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 -0.8087 5 6 1.7579 2.1173 1.3652 6 6 2.8153 3.2481 1.4127 7 6 4.0702 2.6197 0.7722 8 6 3.5772 1.4717 -0.1261 9 1 3.9984 0.5253 0.2129 10 7 3.9620 1.7223 -1.5172 11 6 5.1729 1.3321 -1.9622 12 8 5.9458 0.7717 -1.2092 13 7 5.5271 1.5630 -3.2419 14 6 6.8431 1.1384 -3.7257 15 6 6.9911 1.5179 -5.2005 16 6 6.8566 3.0343 -5.3529 17 6 5.8992 0.8244 -6.0176 18 6 8.3446 1.0805 -5.6984 19 1 9.0221 0.5625 -5.0358 20 6 8.7180 1.3419 -6.9996 21 7 9.7625 0.7344 -7.5187 22 14 7.7401 2.5587 -8.0255 23 1 8.2212 3.9366 -7.7510 24 1 7.9210 2.2491 -9.4665 25 1 6.3007 2.4578 -7.6744 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9091 1.4126 2.1830 32 1 0.7494 2.5299 1.3944 33 1 3.0177 3.5382 2.4436 34 1 2.4806 4.1078 0.8322 35 1 4.7299 2.2303 1.5475 36 1 4.5965 3.3629 0.1731 37 1 3.3454 2.1691 -2.1180 38 1 4.9108 2.0104 -3.8426 39 1 6.9391 0.0581 -3.6167 40 1 7.6210 1.6328 -3.1439 41 1 5.8775 3.3502 -4.9929 42 1 7.6346 3.5284 -4.7707 43 1 6.9626 3.3047 -6.4035 44 1 6.1008 0.9577 -7.0805 45 1 5.8883 -0.2394 -5.7805 46 1 4.9306 1.2608 -5.7740 47 1 10.0250 0.9179 -8.4343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458536009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -65.245776 kcal Electronic energy + Delta-G solvation = -23093.005182 eV Core-core repulsion = 19888.341797 eV Total energy + Delta-G solvation = -3204.663384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29477 -39.56701 -38.29503 -35.05578 -34.73407 -33.89269 -33.23573 -28.85224 -28.49380 -28.01065 -27.27691 -26.58825 -23.50766 -22.38567 -21.15341 -21.04025 -20.81128 -19.23017 -18.04068 -17.60621 -17.09991 -16.56457 -16.03631 -15.97169 -15.43817 -15.32299 -14.98745 -14.72848 -14.53877 -14.35167 -14.01240 -13.99440 -13.91312 -13.74787 -13.05132 -12.85038 -12.73585 -12.38767 -12.34761 -12.13490 -11.94943 -11.89738 -11.77332 -11.75701 -11.53295 -11.40952 -11.30000 -11.23754 -11.04091 -10.61520 -10.39206 -10.26049 -9.65518 -8.29874 -6.31855 1.37015 1.38381 1.51698 1.81365 2.22549 2.35314 3.06079 3.40352 3.55430 3.70347 3.91924 4.08397 4.23154 4.34311 4.39570 4.42046 4.45657 4.54445 4.63105 4.69892 4.73394 4.77535 4.80309 4.84011 4.86903 4.93821 4.95934 5.06872 5.09160 5.15990 5.19281 5.20734 5.26746 5.29132 5.35681 5.44648 5.45294 5.56217 5.57945 5.72007 5.75200 5.80778 6.10615 6.31787 6.72548 7.20686 7.32996 7.67779 8.87556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029938 B = 0.003415 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.048624 B = 8197.340742 C = 8381.858799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.095 0.905 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.160 3.840 9 H 0.061 0.939 10 N -0.725 5.725 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.726 5.726 14 C 0.178 3.822 15 C 0.029 3.971 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.520 4.520 19 H 0.026 0.974 20 C 0.016 3.984 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.281 1.281 24 H -0.315 1.315 25 H -0.202 1.202 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.410 0.590 38 H 0.408 0.592 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.066 0.934 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.228 6.467 14.454 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.106 4.106 4 H 0.113 0.887 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.176 4.176 8 C 0.054 3.946 9 H 0.079 0.921 10 N -0.381 5.381 11 C 0.396 3.604 12 O -0.525 6.525 13 N -0.382 5.382 14 C 0.053 3.947 15 C 0.028 3.972 16 C -0.202 4.202 17 C -0.196 4.196 18 C -0.558 4.558 19 H 0.044 0.956 20 C -0.181 4.181 21 N -0.587 5.587 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.244 1.244 25 H -0.126 1.126 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.416 5.915 14.999 28.430 hybrid contribution 0.598 0.375 -1.241 1.428 sum -22.818 6.290 13.758 27.377 Atomic orbital electron populations 1.21740 0.94295 1.01877 1.02497 1.21554 0.97021 0.95434 1.01510 1.22262 0.91495 0.97063 0.99738 0.88692 1.22530 0.99613 0.97052 0.95669 1.22327 0.93882 0.98240 1.00995 1.22578 0.98755 0.97561 0.98752 1.21604 0.95535 0.97912 0.79531 0.92076 1.45136 1.15357 1.64265 1.13343 1.16234 0.82751 0.79201 0.82231 1.90874 1.53771 1.50555 1.57281 1.45098 1.19027 1.64079 1.10045 1.20844 0.82189 0.97392 0.94257 1.18645 0.94152 0.93345 0.91089 1.22273 1.01368 0.96764 0.99768 1.22197 0.97628 0.99835 0.99923 1.21051 1.00689 1.37351 0.96755 0.95590 1.25887 0.96212 0.97324 0.98723 1.70117 1.30059 1.42969 1.15518 0.86301 0.82670 0.78421 0.75029 1.20886 1.24438 1.12595 0.92875 0.91592 0.92290 0.93328 0.92217 0.91145 0.89254 0.90897 0.90646 0.92752 0.92671 0.75377 0.75499 0.94694 0.94510 0.90705 0.93651 0.94633 0.93592 0.94255 0.91481 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.79 71.98 0.70 -0.85 16 2 C -0.12 -1.68 5.28 30.59 0.16 -1.52 16 3 C -0.09 -1.17 2.55 -9.72 -0.02 -1.20 16 4 H 0.09 1.03 7.73 -2.38 -0.02 1.01 16 5 C -0.11 -1.21 5.67 31.88 0.18 -1.03 16 6 C -0.12 -1.52 6.83 31.67 0.22 -1.31 16 7 C -0.14 -2.78 6.59 31.32 0.21 -2.58 16 8 C 0.16 3.36 2.80 45.72 0.13 3.49 16 9 H 0.06 1.67 7.30 -2.39 -0.02 1.65 16 10 N -0.72 -16.41 5.00 -454.34 -2.27 -18.68 16 11 C 0.70 23.01 8.55 179.05 1.53 24.54 16 12 O -0.64 -27.88 16.02 -4.00 -0.06 -27.95 16 13 N -0.73 -22.97 5.01 -478.52 -2.40 -25.37 16 14 C 0.18 7.37 4.49 86.38 0.39 7.75 16 15 C 0.03 1.24 0.50 -52.93 -0.03 1.21 16 16 C -0.15 -5.43 7.52 71.98 0.54 -4.89 16 17 C -0.14 -5.26 7.53 71.98 0.54 -4.72 16 18 C -0.52 -29.18 8.62 25.60 0.22 -28.95 16 19 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 20 C 0.02 0.90 5.32 84.66 0.45 1.35 16 21 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 22 Si 0.95 42.77 22.79 68.60 1.56 44.33 16 23 H -0.28 -12.46 7.10 99.48 0.71 -11.76 16 24 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.20 -7.64 4.65 99.48 0.46 -7.17 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.57 7.56 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.90 8.02 -2.39 -0.02 0.89 16 31 H 0.07 0.79 7.97 -2.39 -0.02 0.77 16 32 H 0.09 0.67 8.06 -2.38 -0.02 0.65 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.27 7.92 -2.38 -0.02 1.25 16 37 H 0.41 6.40 8.36 -92.71 -0.77 5.62 16 38 H 0.41 10.00 6.27 -92.71 -0.58 9.42 16 39 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.07 2.12 6.86 -2.39 -0.02 2.10 16 42 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.04 1.38 2.25 -2.39 -0.01 1.37 16 44 H 0.05 1.84 4.30 -2.38 -0.01 1.83 16 45 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 46 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 47 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -73.17 351.09 1.70 -71.47 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.65 Total: 23.94 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.22 Total: -8.68 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -4.37 Total: -103.11 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.06 Total: -27.95 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.56 Total: 44.33 kcal Total: -73.17 1.70 -71.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.221 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds