Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53009 * 109.46680 * 2 1 4 4 H 1.08999 * 110.81503 * 51.66812 * 3 2 1 5 5 C 1.54886 * 110.75748 * 288.32643 * 3 2 1 6 6 C 1.54266 * 104.19735 * 203.74587 * 5 3 2 7 7 C 1.53876 * 106.59489 * 23.61229 * 6 5 3 8 8 C 1.54263 * 106.60072 * 359.97438 * 7 6 5 9 9 H 1.09000 * 110.48803 * 95.20308 * 8 7 6 10 10 N 1.46504 * 110.48831 * 217.71556 * 8 7 6 11 11 C 1.34777 * 119.99858 * 273.54883 * 10 8 7 12 12 O 1.21593 * 119.99949 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00128 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00065 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47200 * 59.99818 * 15 14 13 17 17 C 1.53005 * 109.46471 * 299.99791 * 15 14 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 H 1.09001 * 109.47519 * 300.00232 * 1 2 3 27 27 H 1.09006 * 109.46857 * 60.00116 * 1 2 3 28 28 H 1.08998 * 109.46973 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47135 * 240.00456 * 2 1 3 30 30 H 1.08994 * 109.46895 * 119.99535 * 2 1 3 31 31 H 1.08999 * 110.48914 * 85.06598 * 5 3 2 32 32 H 1.09009 * 110.59931 * 322.48025 * 5 3 2 33 33 H 1.08994 * 110.03115 * 264.32749 * 6 5 3 34 34 H 1.08998 * 110.07067 * 142.91174 * 6 5 3 35 35 H 1.09007 * 110.02971 * 240.71262 * 7 6 5 36 36 H 1.08996 * 110.07605 * 119.30781 * 7 6 5 37 37 H 0.97001 * 120.00416 * 93.53984 * 10 8 7 38 38 H 0.97000 * 120.00140 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47602 * 60.00059 * 14 13 11 40 40 H 1.09007 * 109.47337 * 299.99774 * 14 13 11 41 41 H 1.09004 * 109.46783 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.46870 * 300.00189 * 16 15 14 43 43 H 1.08998 * 109.47156 * 60.00128 * 16 15 14 44 44 H 1.08995 * 109.47438 * 299.99599 * 17 15 14 45 45 H 1.08996 * 109.47069 * 60.00459 * 17 15 14 46 46 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 47 47 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8428 3.2410 -1.4395 7 6 3.9807 2.8386 -0.4851 8 6 3.5830 1.4795 0.1267 9 1 4.0330 0.6615 -0.4359 10 7 3.9841 1.4136 1.5342 11 6 5.2264 1.0070 1.8626 12 8 6.0141 0.6943 0.9906 13 7 5.5956 0.9469 3.1574 14 6 6.9458 0.5043 3.5143 15 6 7.1044 0.5270 5.0359 16 6 6.0758 -0.4116 5.6699 17 6 6.8815 1.9505 5.5507 18 6 8.4935 0.0723 5.4031 19 1 9.1931 -0.2054 4.6286 20 6 8.8691 0.0050 6.7279 21 7 8.0171 0.3430 7.6710 22 14 10.5884 -0.5660 7.1833 23 1 11.4997 0.6051 7.2420 24 1 10.5535 -1.2327 8.5098 25 1 11.0790 -1.5241 6.1604 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.7858 2.5245 -1.4232 32 1 1.9515 1.3976 -2.1830 33 1 2.3989 4.1822 -1.1154 34 1 3.2248 3.3388 -2.4556 35 1 4.0891 3.5847 0.3022 36 1 4.9153 2.7407 -1.0374 37 1 3.3557 1.6628 2.2298 38 1 4.9672 1.1959 3.8530 39 1 7.6787 1.1727 3.0623 40 1 7.1045 -0.5100 3.1479 41 1 6.1885 -0.3950 6.7540 42 1 5.0712 -0.0822 5.4043 43 1 6.2345 -1.4256 5.3032 44 1 7.6143 2.6191 5.0990 45 1 5.8769 2.2797 5.2851 46 1 6.9940 1.9666 6.6348 47 1 8.2813 0.2952 8.6031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458536010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -64.881788 kcal Electronic energy + Delta-G solvation = -22992.492078 eV Core-core repulsion = 19787.844478 eV Total energy + Delta-G solvation = -3204.647601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94149 -38.37334 -36.30538 -33.68636 -33.30974 -32.95037 -30.73861 -27.80811 -27.63434 -25.69349 -25.47507 -24.59223 -22.79416 -21.00977 -20.40772 -19.83863 -18.72918 -17.89995 -16.55007 -15.78781 -15.41390 -14.81535 -14.74627 -14.67220 -14.53252 -13.66334 -13.47871 -13.38274 -13.18780 -12.86553 -12.80404 -12.31392 -12.13463 -12.00217 -11.63228 -11.34990 -11.27882 -11.17009 -10.97632 -10.82870 -10.74591 -10.66607 -10.62597 -10.48956 -10.35036 -10.18341 -9.70122 -9.59753 -9.27061 -8.86305 -8.76089 -8.38689 -8.13216 -5.99817 -4.09617 3.17139 3.30030 3.36912 3.41685 3.70221 4.30660 4.40939 4.47173 4.58894 4.83287 4.96066 5.06920 5.17018 5.26974 5.31140 5.35616 5.42047 5.46740 5.53263 5.64660 5.75840 5.83879 5.89408 5.92349 6.06025 6.12182 6.17177 6.27046 6.28746 6.40801 6.54540 6.80836 6.84278 6.86027 6.95566 7.06595 7.15429 7.36433 7.47992 7.59006 7.72391 8.04134 8.15616 8.41491 8.56091 8.90530 9.12766 9.56076 11.01620 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032106 B = 0.003223 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.892119 B = 8686.135375 C = 9024.753948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.138 4.138 8 C 0.167 3.833 9 H 0.091 0.909 10 N -0.747 5.747 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.734 5.734 14 C 0.151 3.849 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.505 4.505 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.005 0.995 46 H 0.084 0.916 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 3.913 -12.958 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.117 4.117 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.177 4.177 8 C 0.061 3.939 9 H 0.109 0.891 10 N -0.402 5.402 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.388 5.388 14 C 0.028 3.972 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.225 0.775 38 H 0.227 0.773 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.024 0.976 46 H 0.103 0.897 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.777 3.611 -13.540 20.365 hybrid contribution 0.382 0.001 0.984 1.056 sum -14.395 3.612 -12.556 19.440 Atomic orbital electron populations 1.21774 0.95837 1.01514 1.01675 1.21531 0.95715 0.95710 1.02525 1.22417 0.94521 0.96562 0.98226 0.90160 1.22358 0.98879 0.97584 0.96555 1.22094 0.95975 0.98362 0.99654 1.22582 0.98667 0.97434 0.99029 1.21616 0.93162 0.97752 0.81404 0.89131 1.45183 1.13739 1.73414 1.07874 1.16106 0.81974 0.78446 0.83758 1.90874 1.52058 1.56646 1.48349 1.45508 1.17351 1.71153 1.04833 1.21558 0.79446 0.98041 0.98172 1.18360 0.95681 0.93123 0.87315 1.21813 0.94535 0.97792 1.04559 1.21812 0.95541 0.96873 1.04447 1.21002 0.96883 1.44351 0.92121 0.92416 1.24876 0.97172 0.95062 0.96414 1.69805 1.34334 1.48436 0.99964 0.86575 0.84681 0.78892 0.77745 1.20730 1.21299 1.19887 0.92827 0.92758 0.92884 0.91785 0.91631 0.91495 0.91302 0.91926 0.91832 0.91471 0.91273 0.77473 0.77286 0.93056 0.93059 0.89671 0.97567 0.95491 0.95489 0.97574 0.89714 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.73 16 2 C -0.12 -1.02 5.43 -26.72 -0.15 -1.16 16 3 C -0.10 -0.86 2.46 -88.64 -0.22 -1.08 16 4 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 5 C -0.12 -0.89 5.69 -25.07 -0.14 -1.04 16 6 C -0.12 -1.05 6.80 -25.61 -0.17 -1.22 16 7 C -0.14 -1.56 6.53 -25.61 -0.17 -1.73 16 8 C 0.17 1.98 2.60 -66.28 -0.17 1.80 16 9 H 0.09 1.27 7.57 -51.93 -0.39 0.88 16 10 N -0.75 -9.93 5.12 -57.06 -0.29 -10.22 16 11 C 0.70 12.62 8.56 -86.92 -0.74 11.88 16 12 O -0.60 -13.26 16.05 5.28 0.08 -13.17 16 13 N -0.73 -13.44 4.96 -65.22 -0.32 -13.77 16 14 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 18 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.52 7.94 -51.92 -0.41 0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.79 8.04 -51.92 -0.42 0.38 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.39 4.22 8.55 -40.82 -0.35 3.88 16 38 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 2.14 6.06 -51.93 -0.31 1.82 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 46 H 0.08 2.13 6.08 -51.93 -0.32 1.81 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -29.06 361.92 -9.43 -38.49 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.58 Total: 6.65 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.26 Total: -6.05 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.10 Total: -47.24 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.06 -9.43 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.394 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds