Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53009 * 109.46680 * 2 1 4 4 H 1.08999 * 110.81503 * 51.66812 * 3 2 1 5 5 C 1.54886 * 110.75748 * 288.32643 * 3 2 1 6 6 C 1.54266 * 104.19735 * 203.74587 * 5 3 2 7 7 C 1.53876 * 106.59489 * 23.61229 * 6 5 3 8 8 C 1.54263 * 106.60072 * 359.97438 * 7 6 5 9 9 H 1.09000 * 110.48803 * 95.20308 * 8 7 6 10 10 N 1.46504 * 110.48831 * 217.71556 * 8 7 6 11 11 C 1.34777 * 119.99858 * 273.54883 * 10 8 7 12 12 O 1.21593 * 119.99949 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00128 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00065 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47200 * 59.99818 * 15 14 13 17 17 C 1.53005 * 109.46471 * 299.99791 * 15 14 13 18 18 C 1.50701 * 109.47211 * 180.02562 * 15 14 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48504 * 109.47209 * 89.99886 * 22 20 18 24 24 H 1.48501 * 109.47358 * 209.99377 * 22 20 18 25 25 H 1.48496 * 109.47341 * 329.99989 * 22 20 18 26 26 H 1.09001 * 109.47519 * 300.00232 * 1 2 3 27 27 H 1.09006 * 109.46857 * 60.00116 * 1 2 3 28 28 H 1.08998 * 109.46973 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47135 * 240.00456 * 2 1 3 30 30 H 1.08994 * 109.46895 * 119.99535 * 2 1 3 31 31 H 1.08999 * 110.48914 * 85.06598 * 5 3 2 32 32 H 1.09009 * 110.59931 * 322.48025 * 5 3 2 33 33 H 1.08994 * 110.03115 * 264.32749 * 6 5 3 34 34 H 1.08998 * 110.07067 * 142.91174 * 6 5 3 35 35 H 1.09007 * 110.02971 * 240.71262 * 7 6 5 36 36 H 1.08996 * 110.07605 * 119.30781 * 7 6 5 37 37 H 0.97001 * 120.00416 * 93.53984 * 10 8 7 38 38 H 0.97000 * 120.00140 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47602 * 60.00059 * 14 13 11 40 40 H 1.09007 * 109.47337 * 299.99774 * 14 13 11 41 41 H 1.09004 * 109.46783 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.46870 * 300.00189 * 16 15 14 43 43 H 1.08998 * 109.47156 * 60.00128 * 16 15 14 44 44 H 1.08995 * 109.47438 * 299.99599 * 17 15 14 45 45 H 1.08996 * 109.47069 * 60.00459 * 17 15 14 46 46 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 47 47 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7936 2.1119 -1.3749 6 6 2.8428 3.2410 -1.4395 7 6 3.9807 2.8386 -0.4851 8 6 3.5830 1.4795 0.1267 9 1 4.0330 0.6615 -0.4359 10 7 3.9841 1.4136 1.5342 11 6 5.2264 1.0070 1.8626 12 8 6.0141 0.6943 0.9906 13 7 5.5956 0.9469 3.1574 14 6 6.9458 0.5043 3.5143 15 6 7.1044 0.5270 5.0359 16 6 6.0758 -0.4116 5.6699 17 6 6.8815 1.9505 5.5507 18 6 8.4935 0.0723 5.4031 19 1 9.1931 -0.2054 4.6286 20 6 8.8691 0.0050 6.7279 21 7 8.0171 0.3430 7.6710 22 14 10.5884 -0.5660 7.1833 23 1 11.4997 0.6051 7.2420 24 1 10.5535 -1.2327 8.5098 25 1 11.0790 -1.5241 6.1604 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.7858 2.5245 -1.4232 32 1 1.9515 1.3976 -2.1830 33 1 2.3989 4.1822 -1.1154 34 1 3.2248 3.3388 -2.4556 35 1 4.0891 3.5847 0.3022 36 1 4.9153 2.7407 -1.0374 37 1 3.3557 1.6628 2.2298 38 1 4.9672 1.1959 3.8530 39 1 7.6787 1.1727 3.0623 40 1 7.1045 -0.5100 3.1479 41 1 6.1885 -0.3950 6.7540 42 1 5.0712 -0.0822 5.4043 43 1 6.2345 -1.4256 5.3032 44 1 7.6143 2.6191 5.0990 45 1 5.8769 2.2797 5.2851 46 1 6.9940 1.9666 6.6348 47 1 8.2813 0.2952 8.6031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458536010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -81.469050 kcal Electronic energy + Delta-G solvation = -22993.211356 eV Core-core repulsion = 19787.844478 eV Total energy + Delta-G solvation = -3205.366878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23428 -39.48134 -38.04828 -35.04106 -34.70964 -33.92697 -32.56164 -28.69052 -28.50196 -27.55595 -27.38304 -26.31172 -23.52347 -22.29443 -21.31231 -20.83081 -20.55462 -19.28632 -17.76608 -17.63972 -16.65994 -16.45194 -16.04831 -15.96265 -15.35680 -15.21029 -14.77339 -14.69456 -14.30347 -14.14185 -13.99692 -13.83870 -13.25111 -13.11126 -13.09003 -12.72491 -12.67675 -12.58702 -12.37094 -12.23298 -12.13409 -12.02088 -11.71914 -11.50003 -11.47737 -11.34371 -11.29087 -11.27522 -11.10474 -10.70055 -10.39932 -10.21958 -9.61867 -8.02030 -6.17684 1.42747 1.45410 1.53850 1.85185 2.23542 2.46700 3.21521 3.41256 3.57418 3.69954 3.90542 4.23921 4.39318 4.42377 4.47774 4.52362 4.53970 4.60289 4.68618 4.71598 4.74538 4.79628 4.96471 5.00299 5.06724 5.09976 5.11126 5.16555 5.20774 5.23694 5.24697 5.29278 5.35824 5.39653 5.44609 5.57377 5.64370 5.67580 5.67949 5.72713 6.12583 6.15844 6.22699 6.44384 6.86527 7.20873 7.50059 7.68488 8.96969 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032106 B = 0.003223 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.892119 B = 8686.135375 C = 9024.753948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.095 0.905 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.138 4.138 8 C 0.160 3.840 9 H 0.064 0.936 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.727 5.727 14 C 0.169 3.831 15 C 0.052 3.948 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.276 1.276 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.409 0.591 38 H 0.405 0.595 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.774 4.729 -13.312 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.106 4.106 4 H 0.113 0.887 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.177 4.177 8 C 0.054 3.946 9 H 0.082 0.918 10 N -0.381 5.381 11 C 0.395 3.605 12 O -0.525 6.525 13 N -0.382 5.382 14 C 0.044 3.956 15 C 0.052 3.948 16 C -0.176 4.176 17 C -0.176 4.176 18 C -0.569 4.569 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.538 5.538 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.207 1.207 25 H -0.201 1.201 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.245 0.755 38 H 0.241 0.759 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.063 4.448 -13.884 22.443 hybrid contribution 1.065 -0.252 1.057 1.521 sum -15.997 4.196 -12.828 20.930 Atomic orbital electron populations 1.21741 0.94288 1.01870 1.02483 1.21516 0.96997 0.95375 1.01576 1.22381 0.91561 0.97031 0.99580 0.88668 1.22363 0.99698 0.97139 0.95636 1.22066 0.95036 0.99276 0.99081 1.22547 0.98935 0.96885 0.99322 1.21791 0.95555 0.97247 0.79986 0.91780 1.45033 1.12150 1.71738 1.09211 1.16251 0.82959 0.78251 0.82998 1.90849 1.53763 1.58491 1.49434 1.45199 1.16266 1.71273 1.05466 1.21093 0.80935 0.96632 0.96936 1.18353 0.94636 0.93671 0.88168 1.21650 0.95990 0.97183 1.02818 1.21649 0.97086 0.96185 1.02695 1.21285 0.98358 1.45052 0.92193 0.93819 1.25441 1.00048 0.95214 0.96384 1.69903 1.35326 1.48504 1.00026 0.85761 0.81258 0.78396 0.77403 1.20477 1.20724 1.20127 0.92274 0.91638 0.92856 0.92329 0.93153 0.89270 0.91219 0.90488 0.91359 0.91872 0.93689 0.75524 0.75856 0.94886 0.94897 0.91846 0.94460 0.96449 0.96451 0.94468 0.91890 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.81 71.98 0.71 -1.02 16 2 C -0.12 -1.82 5.43 30.60 0.17 -1.65 16 3 C -0.09 -1.31 2.46 -9.51 -0.02 -1.33 16 4 H 0.10 1.21 8.02 -2.39 -0.02 1.19 16 5 C -0.11 -1.38 5.69 31.67 0.18 -1.19 16 6 C -0.12 -1.72 6.80 31.32 0.21 -1.51 16 7 C -0.14 -3.01 6.53 31.32 0.20 -2.81 16 8 C 0.16 3.66 2.60 46.06 0.12 3.78 16 9 H 0.06 1.84 7.57 -2.39 -0.02 1.82 16 10 N -0.73 -18.46 5.12 -452.71 -2.32 -20.78 16 11 C 0.70 25.02 8.56 179.05 1.53 26.55 16 12 O -0.64 -29.07 16.05 -4.01 -0.06 -29.14 16 13 N -0.73 -26.06 4.96 -478.51 -2.37 -28.44 16 14 C 0.17 7.47 4.50 86.38 0.39 7.86 16 15 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 16 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 17 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 18 C -0.53 -28.54 8.01 25.60 0.21 -28.34 16 19 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 20 C 0.03 1.54 5.15 84.65 0.44 1.97 16 21 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 22 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.64 7.65 -2.38 -0.02 0.62 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.97 7.99 -2.39 -0.02 0.95 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.07 0.88 7.94 -2.38 -0.02 0.86 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.42 8.04 -2.38 -0.02 1.40 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.41 7.82 8.55 -92.71 -0.79 7.03 16 38 H 0.40 12.42 6.18 -92.71 -0.57 11.85 16 39 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 3.15 6.06 -2.38 -0.01 3.14 16 42 H 0.04 1.39 6.86 -2.38 -0.02 1.38 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 46 H 0.06 3.13 6.08 -2.38 -0.01 3.11 16 47 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -63.52 361.92 2.31 -61.21 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.43 Total: 24.80 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.27 Total: -4.72 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.49 Total: -97.19 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.06 Total: -29.14 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.52 2.31 -61.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458536010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.262 kcal (2) G-P(sol) polarization free energy of solvation -63.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds