Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.99899 * 270.00188 * 4 3 2 6 6 C 1.52997 * 109.47377 * 90.00269 * 5 4 3 7 7 C 1.53003 * 117.49739 * 243.61994 * 6 5 4 8 8 C 1.52999 * 59.99975 * 252.50849 * 7 6 5 9 9 C 1.34773 * 119.99455 * 90.00023 * 4 3 2 10 10 O 1.21595 * 119.99560 * 179.97438 * 9 4 3 11 11 N 1.34780 * 120.00581 * 359.97438 * 9 4 3 12 12 C 1.46497 * 119.99868 * 180.02562 * 11 9 4 13 13 C 1.53004 * 109.46935 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.46708 * 299.99891 * 13 12 11 15 15 C 1.52995 * 109.47352 * 59.99557 * 13 12 11 16 16 C 1.50702 * 109.47269 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99498 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00013 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00074 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00059 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47305 * 89.99442 * 20 18 16 22 22 H 1.48501 * 109.46872 * 209.99854 * 20 18 16 23 23 H 1.48499 * 109.46754 * 329.99691 * 20 18 16 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.09006 * 109.46911 * 209.99921 * 5 4 3 32 32 H 1.08996 * 109.47170 * 329.99434 * 5 4 3 33 33 H 1.09003 * 115.55155 * 29.32368 * 6 5 4 34 34 H 1.09001 * 117.49730 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.50111 * 145.01401 * 7 6 5 36 36 H 1.08998 * 117.50080 * 252.51250 * 8 7 6 37 37 H 1.08998 * 117.49680 * 107.48979 * 8 7 6 38 38 H 0.96993 * 119.99834 * 359.97438 * 11 9 4 39 39 H 1.09005 * 109.47133 * 299.99589 * 12 11 9 40 40 H 1.09002 * 109.47572 * 60.00296 * 12 11 9 41 41 H 1.08996 * 109.47104 * 59.99833 * 14 13 12 42 42 H 1.09003 * 109.46806 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.46590 * 299.99718 * 14 13 12 44 44 H 1.09002 * 109.46910 * 60.00110 * 15 13 12 45 45 H 1.09003 * 109.47067 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47153 * 300.00591 * 15 13 12 47 47 H 0.96996 * 120.00273 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.4918 0.0001 1.7116 7 6 3.8403 -0.4648 3.0156 8 6 5.3488 -0.2152 2.9606 9 6 4.1793 1.4422 -1.1663 10 8 5.3952 1.4426 -1.1658 11 7 3.5059 1.4415 -2.3338 12 6 4.2390 1.4407 -3.6022 13 6 3.2452 1.4407 -4.7656 14 6 2.3650 0.1918 -4.6844 15 6 2.3660 2.6903 -4.6854 16 6 3.9992 1.4393 -6.0704 17 1 5.0792 1.4389 -6.0699 18 6 3.3103 1.4385 -7.2647 19 7 1.9952 1.4385 -7.2652 20 14 4.2449 1.4360 -8.8821 21 1 4.4916 0.0353 -9.3091 22 1 3.4432 2.1355 -9.9181 23 1 5.5429 2.1353 -8.7047 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1895 1.9563 1.1396 32 1 3.6476 1.9565 2.0289 33 1 4.5834 -0.7291 0.9065 34 1 3.2305 0.2572 3.5588 35 1 3.5029 -1.4999 3.0686 36 1 6.0040 -1.0861 2.9775 37 1 5.7310 0.6709 3.4675 38 1 2.5360 1.4408 -2.3342 39 1 4.8657 2.3307 -3.6602 40 1 4.8656 0.5507 -3.6592 41 1 1.8197 0.1924 -3.7406 42 1 1.6573 0.1916 -5.5134 43 1 2.9914 -0.6984 -4.7416 44 1 2.9930 3.5800 -4.7431 45 1 1.6583 2.6904 -5.5144 46 1 1.8207 2.6908 -3.7416 47 1 1.5105 1.4376 -8.1054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459233905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = -18.022449 kcal Electronic energy + Delta-G solvation = -23545.297000 eV Core-core repulsion = 20342.681373 eV Total energy + Delta-G solvation = -3202.615627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01225 -37.62893 -36.32247 -35.73157 -33.16464 -32.70422 -30.78725 -27.62689 -26.06721 -25.69905 -25.36380 -24.21338 -22.50482 -21.90530 -20.75182 -19.53170 -18.81755 -17.79315 -16.49594 -15.82865 -15.39643 -15.12588 -14.75138 -14.59925 -14.15732 -13.94358 -13.66026 -13.41078 -12.87600 -12.71233 -12.60203 -12.27041 -12.09346 -11.93806 -11.73685 -11.61654 -11.34971 -11.24087 -11.16316 -10.84836 -10.78046 -10.66857 -10.52789 -10.35308 -10.17972 -9.98031 -9.62655 -9.59977 -9.26538 -8.76255 -8.63893 -8.37801 -8.08536 -5.99752 -4.09431 2.97390 3.30088 3.36946 3.41503 3.65957 3.74142 4.33773 4.46689 4.65372 4.80968 4.84402 4.91596 5.02723 5.19637 5.25349 5.27103 5.36991 5.49607 5.57485 5.58175 5.71509 5.77081 5.80102 5.96596 5.97813 6.07237 6.16879 6.24679 6.26990 6.40741 6.53860 6.72174 6.84366 6.85416 6.96520 7.06227 7.15456 7.31116 7.42987 7.58620 7.72252 8.03808 8.15211 8.40972 8.48823 8.90470 9.10039 9.56195 11.01693 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024961 B = 0.004026 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.486779 B = 6952.509213 C = 7603.312476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.113 3.887 4 N -0.632 5.632 5 C 0.167 3.833 6 C -0.159 4.159 7 C -0.183 4.183 8 C -0.177 4.177 9 C 0.699 3.301 10 O -0.597 6.597 11 N -0.732 5.732 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.394 0.606 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 -1.639 17.969 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.011 4.011 4 N -0.369 5.369 5 C 0.043 3.957 6 C -0.179 4.179 7 C -0.220 4.220 8 C -0.215 4.215 9 C 0.400 3.600 10 O -0.475 6.475 11 N -0.388 5.388 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.658 -1.605 17.778 18.047 hybrid contribution -0.061 -0.165 -0.871 0.889 sum -2.718 -1.771 16.907 17.215 Atomic orbital electron populations 1.21707 0.95267 1.01945 1.01877 1.22013 0.95973 0.97355 1.03114 1.21555 0.79918 0.96907 1.02701 1.47114 1.05724 1.79193 1.04879 1.20789 0.97452 0.93702 0.83776 1.22829 1.04219 0.99178 0.91679 1.23032 0.95576 1.02101 1.01253 1.22906 0.93533 1.03284 1.01738 1.16035 0.85384 0.78000 0.80535 1.90877 1.11694 1.58612 1.86356 1.45656 1.10073 1.78007 1.05067 1.21578 0.94992 1.00275 0.80577 1.18361 0.91958 0.92779 0.91382 1.21808 1.00203 0.97586 0.99010 1.21808 1.00218 0.97633 0.98973 1.20992 0.92901 1.50662 0.89731 0.92426 1.24870 0.94867 0.94836 0.98918 1.69803 1.05773 1.50732 1.26205 0.86578 0.79924 0.78085 0.83326 1.20741 1.21303 1.19895 0.92292 0.92558 0.92842 0.91472 0.91318 0.90602 0.90800 0.89520 0.90963 0.87686 0.88960 0.89185 0.88955 0.88800 0.76972 0.93029 0.93036 0.97640 0.89667 0.95520 0.95463 0.89647 0.97718 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.15 0.37 -0.99 16 2 C -0.15 -1.55 6.26 -26.74 -0.17 -1.72 16 3 C 0.11 1.26 5.21 -4.04 -0.02 1.24 16 4 N -0.63 -8.84 2.47 -179.42 -0.44 -9.29 16 5 C 0.17 2.01 5.73 -4.05 -0.02 1.99 16 6 C -0.16 -1.81 5.46 -90.62 -0.49 -2.31 16 7 C -0.18 -1.61 10.10 -26.73 -0.27 -1.88 16 8 C -0.18 -1.68 10.25 -26.73 -0.27 -1.96 16 9 C 0.70 12.96 8.28 -86.92 -0.72 12.24 16 10 O -0.60 -13.28 15.92 5.28 0.08 -13.20 16 11 N -0.73 -13.70 4.82 -65.22 -0.31 -14.01 16 12 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.92 8.08 37.15 0.30 -2.62 16 16 C -0.50 -13.33 8.01 -34.44 -0.28 -13.61 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 20 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 29 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 30 H 0.07 0.87 6.37 -51.93 -0.33 0.54 16 31 H 0.09 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 33 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 6.73 3.89 -40.82 -0.16 6.57 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 42 H 0.08 2.13 6.07 -51.93 -0.31 1.82 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -28.86 367.31 -9.55 -38.41 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.44 Total: 5.95 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.47 Total: -6.09 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.24 Total: -46.43 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.86 -9.55 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459233905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.390 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds