Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 H 1.09004 * 109.58160 * 59.68410 * 3 2 1 5 5 C 1.53190 * 109.70520 * 299.32866 * 3 2 1 6 6 C 1.53039 * 109.31384 * 185.50719 * 5 3 2 7 7 C 1.53031 * 109.53822 * 61.36123 * 6 5 3 8 8 C 1.53624 * 109.24402 * 298.51317 * 7 6 5 9 9 N 1.46920 * 108.54403 * 54.85817 * 8 7 6 10 10 C 1.34776 * 120.63544 * 126.37201 * 9 8 7 11 11 O 1.21582 * 120.00303 * 185.34476 * 10 9 8 12 12 N 1.34777 * 119.99579 * 5.33289 * 10 9 8 13 13 C 1.46501 * 119.99996 * 175.01304 * 12 10 9 14 14 C 1.52995 * 109.47358 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47229 * 60.00450 * 14 13 12 16 16 C 1.53008 * 109.47053 * 300.00226 * 14 13 12 17 17 C 1.50699 * 109.46998 * 180.02562 * 14 13 12 18 18 H 1.07993 * 120.00665 * 359.97438 * 17 14 13 19 19 C 1.37888 * 119.99733 * 180.27607 * 17 14 13 20 20 N 1.31506 * 119.99899 * 359.72441 * 19 17 14 21 21 Si 1.86802 * 119.99827 * 179.72022 * 19 17 14 22 22 H 1.48496 * 109.46799 * 89.99769 * 21 19 17 23 23 H 1.48496 * 109.47124 * 209.99951 * 21 19 17 24 24 H 1.48503 * 109.47157 * 330.00053 * 21 19 17 25 25 H 1.09001 * 109.47009 * 55.07536 * 1 2 3 26 26 H 1.09000 * 109.46956 * 175.07006 * 1 2 3 27 27 H 1.09001 * 109.47106 * 295.07356 * 1 2 3 28 28 H 1.09000 * 109.47545 * 239.99989 * 2 1 3 29 29 H 1.08995 * 109.47136 * 119.99958 * 2 1 3 30 30 H 1.09001 * 109.49479 * 305.45787 * 5 3 2 31 31 H 1.09008 * 109.49512 * 65.55141 * 5 3 2 32 32 H 1.08998 * 109.45646 * 181.38528 * 6 5 3 33 33 H 1.09000 * 109.45993 * 301.34041 * 6 5 3 34 34 H 1.09001 * 109.49929 * 58.58913 * 7 6 5 35 35 H 1.09000 * 109.50180 * 178.64807 * 7 6 5 36 36 H 1.08995 * 109.73737 * 295.11559 * 8 7 6 37 37 H 1.09007 * 109.66470 * 174.55128 * 8 7 6 38 38 H 0.97002 * 120.00275 * 355.02588 * 12 10 9 39 39 H 1.09000 * 109.46636 * 60.00297 * 13 12 10 40 40 H 1.09001 * 109.47359 * 300.00778 * 13 12 10 41 41 H 1.09001 * 109.47408 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.46872 * 300.00106 * 15 14 13 43 43 H 1.08995 * 109.47520 * 60.00010 * 15 14 13 44 44 H 1.09001 * 109.47012 * 299.99716 * 16 14 13 45 45 H 1.09000 * 109.47012 * 59.99916 * 16 14 13 46 46 H 1.09002 * 109.46988 * 180.02562 * 16 14 13 47 47 H 0.96998 * 120.00236 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6731 1.9597 0.8866 5 6 1.5462 2.1650 -1.2573 6 6 2.1719 3.5602 -1.3181 7 6 3.6949 3.4350 -1.3997 8 6 4.2131 2.7276 -0.1383 9 7 3.5093 1.4455 0.0009 10 6 4.1982 0.2946 0.1325 11 8 3.6084 -0.7685 0.1492 12 7 5.5409 0.3222 0.2454 13 6 6.2804 -0.9171 0.4978 14 6 7.7768 -0.6099 0.5824 15 6 8.0312 0.3771 1.7235 16 6 8.2467 0.0046 -0.7377 17 6 8.5374 -1.8848 0.8415 18 1 8.0067 -2.8204 0.9367 19 6 9.9106 -1.8556 0.9631 20 7 10.5569 -0.7162 0.8476 21 14 10.8528 -3.4348 1.2920 22 1 11.2289 -4.0647 0.0009 23 1 12.0804 -3.1262 2.0684 24 1 9.9980 -4.3688 2.0680 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 -1.0239 -0.0883 27 1 -0.3633 0.4355 0.9308 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8370 1.5970 -2.1411 31 1 0.4603 2.2543 -1.2228 32 1 1.8030 4.0856 -2.1990 33 1 1.9010 4.1190 -0.4223 34 1 3.9656 2.8552 -2.2821 35 1 4.1386 4.4283 -1.4671 36 1 4.0198 3.3475 0.7371 37 1 5.2842 2.5481 -0.2322 38 1 6.0177 1.1626 0.1597 39 1 6.0989 -1.6204 -0.3149 40 1 5.9459 -1.3546 1.4385 41 1 9.0972 0.5963 1.7834 42 1 7.4810 1.2991 1.5357 43 1 7.6965 -0.0606 2.6639 44 1 8.0655 -0.6986 -1.5506 45 1 7.6965 0.9266 -0.9255 46 1 9.3129 0.2230 -0.6777 47 1 11.5230 -0.6957 0.9327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459235650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = -31.989638 kcal Electronic energy + Delta-G solvation = -23861.871294 eV Core-core repulsion = 20658.650004 eV Total energy + Delta-G solvation = -3203.221290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43925 -37.68112 -36.25294 -34.47833 -32.94020 -32.51516 -30.58608 -29.38695 -25.89960 -25.70310 -25.28440 -24.27085 -23.97426 -21.17019 -21.01940 -19.40756 -18.69569 -17.49386 -16.00994 -15.74427 -15.48580 -14.77839 -14.63748 -14.50652 -14.20772 -13.95351 -13.56725 -13.39390 -13.02133 -12.85421 -12.73038 -12.53209 -12.15720 -11.93254 -11.70368 -11.39626 -11.20276 -11.16021 -11.03494 -10.86228 -10.78145 -10.66810 -10.51651 -10.50507 -10.34006 -10.16540 -9.60032 -9.30393 -8.85082 -8.74760 -8.47422 -8.36908 -8.05325 -6.00051 -4.09713 3.00399 3.29890 3.36764 3.41219 3.66148 4.30442 4.44107 4.70201 4.73908 4.74936 4.98125 5.17249 5.22632 5.26793 5.33344 5.44530 5.51186 5.63630 5.65730 5.76218 5.78297 5.83942 5.92911 5.97569 6.17322 6.19913 6.25037 6.40464 6.52439 6.53747 6.59717 6.82060 6.84622 6.93474 6.98092 7.05997 7.17969 7.34154 7.43368 7.58231 7.71954 8.03370 8.14967 8.40937 8.49922 8.90277 9.12285 9.55879 11.01418 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.004040 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.978192 B = 6929.013006 C = 7617.898751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C 0.166 3.834 4 H 0.063 0.937 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.112 3.888 9 N -0.633 5.633 10 C 0.700 3.300 11 O -0.590 6.590 12 N -0.736 5.736 13 C 0.150 3.850 14 C 0.055 3.945 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.504 4.504 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.391 0.609 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.004 0.996 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.004 0.996 46 H 0.084 0.916 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 10.279 -3.107 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.147 4.147 3 C 0.063 3.937 4 H 0.081 0.919 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.173 4.173 8 C -0.012 4.012 9 N -0.372 5.372 10 C 0.402 3.598 11 O -0.469 6.469 12 N -0.392 5.392 13 C 0.027 3.973 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.186 4.186 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.023 0.977 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.023 0.977 46 H 0.103 0.897 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.019 9.536 -3.054 18.051 hybrid contribution 0.849 -0.279 0.094 0.898 sum -14.170 9.257 -2.960 17.183 Atomic orbital electron populations 1.22032 0.97534 1.01408 1.00893 1.22028 0.92755 0.94170 1.05740 1.21068 0.78211 0.97683 0.96771 0.91909 1.22070 1.00231 0.96041 0.98804 1.21501 0.95249 0.96993 1.01828 1.21990 0.96225 1.00705 0.98414 1.21673 0.96718 0.85101 0.97715 1.47328 1.06020 1.05441 1.78374 1.16058 0.82207 0.83557 0.77991 1.90907 1.67572 1.29427 1.59024 1.45796 1.04515 1.12782 1.76116 1.21551 0.92853 0.83446 0.99429 1.18364 0.87862 0.95480 0.92832 1.21808 1.03373 0.95620 0.97834 1.21807 1.03509 0.96006 0.97269 1.20988 0.91504 0.92920 1.48850 0.92431 1.24877 0.97569 0.96120 0.94943 1.69801 1.07994 1.24470 1.50258 0.86576 0.79356 0.83690 0.78280 1.20734 1.21304 1.19900 0.93135 0.92820 0.93415 0.90577 0.89401 0.91508 0.90856 0.91934 0.91941 0.91393 0.90898 0.91622 0.90238 0.77161 0.92989 0.93131 0.89654 0.97709 0.95479 0.95470 0.97734 0.89694 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.71 37.16 0.36 -1.37 16 2 C -0.11 -1.53 3.86 -26.73 -0.10 -1.64 16 3 C 0.17 2.07 3.00 -67.60 -0.20 1.87 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.13 -1.34 4.88 -26.61 -0.13 -1.47 16 6 C -0.12 -1.02 5.88 -26.70 -0.16 -1.18 16 7 C -0.13 -1.28 6.10 -26.39 -0.16 -1.44 16 8 C 0.11 1.27 6.41 -3.49 -0.02 1.25 16 9 N -0.63 -9.05 2.97 -170.65 -0.51 -9.56 16 10 C 0.70 12.79 8.21 -86.92 -0.71 12.08 16 11 O -0.59 -12.37 11.75 5.29 0.06 -12.31 16 12 N -0.74 -13.69 4.87 -65.23 -0.32 -14.00 16 13 C 0.15 3.28 4.51 -4.04 -0.02 3.26 16 14 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 17 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.67 9.35 55.43 0.52 -23.15 16 21 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.05 0.47 6.34 -51.93 -0.33 0.14 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.25 7.02 -51.93 -0.36 0.88 16 29 H 0.09 1.48 6.46 -51.93 -0.34 1.15 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.63 6.67 -51.92 -0.35 0.28 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.94 5.65 -51.92 -0.29 0.65 16 38 H 0.39 6.67 3.65 -40.82 -0.15 6.52 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 2.14 6.06 -51.93 -0.31 1.82 16 42 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 46 H 0.08 2.13 6.08 -51.93 -0.32 1.81 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -28.03 345.73 -9.25 -37.27 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.20 Total: 5.33 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.99 Total: -4.59 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.31 Total: -46.71 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.06 Total: -12.31 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.03 -9.25 -37.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459235650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.285 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds