Wall clock time and date at job start Tue Mar 31 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47300 * 2 1 4 4 H 1.08998 * 109.99723 * 306.59467 * 3 2 1 5 5 C 1.54315 * 109.77073 * 67.74369 * 3 2 1 6 6 H 1.08998 * 111.08235 * 23.40477 * 5 3 2 7 7 C 1.53003 * 110.59056 * 260.14586 * 5 3 2 8 8 C 1.55158 * 102.86146 * 141.88851 * 5 3 2 9 9 C 1.54914 * 101.58139 * 324.30183 * 8 5 3 10 10 N 1.47015 * 109.88377 * 185.49243 * 3 2 1 11 11 C 1.34775 * 125.64626 * 61.68429 * 10 3 2 12 12 O 1.21587 * 120.00037 * 354.17383 * 11 10 3 13 13 N 1.34777 * 119.99994 * 174.17957 * 11 10 3 14 14 C 1.46507 * 119.99960 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46862 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47295 * 59.99797 * 15 14 13 17 17 C 1.53000 * 109.47361 * 299.99568 * 15 14 13 18 18 C 1.50700 * 109.46811 * 179.97438 * 15 14 13 19 19 H 1.07996 * 120.00479 * 359.72619 * 18 15 14 20 20 C 1.37882 * 119.99618 * 179.97438 * 18 15 14 21 21 N 1.31505 * 120.00176 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99706 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47205 * 89.99778 * 22 20 18 24 24 H 1.48493 * 109.47015 * 210.00114 * 22 20 18 25 25 H 1.48504 * 109.46757 * 329.99959 * 22 20 18 26 26 H 1.08996 * 109.47015 * 181.50971 * 1 2 3 27 27 H 1.09003 * 109.47408 * 301.51502 * 1 2 3 28 28 H 1.09003 * 109.47020 * 61.51427 * 1 2 3 29 29 H 1.09001 * 109.47671 * 239.99946 * 2 1 3 30 30 H 1.09003 * 109.47134 * 120.00264 * 2 1 3 31 31 H 1.08992 * 109.47110 * 305.19176 * 7 5 3 32 32 H 1.08991 * 109.47065 * 65.19870 * 7 5 3 33 33 H 1.09001 * 109.46509 * 185.19774 * 7 5 3 34 34 H 1.09000 * 111.00349 * 206.23164 * 8 5 3 35 35 H 1.08998 * 111.03711 * 82.39357 * 8 5 3 36 36 H 1.09000 * 110.36496 * 278.17375 * 9 8 5 37 37 H 1.08996 * 110.45481 * 155.89388 * 9 8 5 38 38 H 0.96998 * 120.00402 * 359.97438 * 13 11 10 39 39 H 1.08994 * 109.47448 * 59.99664 * 14 13 11 40 40 H 1.09007 * 109.46491 * 299.99213 * 14 13 11 41 41 H 1.08995 * 109.47221 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.47262 * 299.99956 * 16 15 14 43 43 H 1.09001 * 109.47047 * 59.99973 * 16 15 14 44 44 H 1.08999 * 109.46803 * 300.00521 * 17 15 14 45 45 H 1.09001 * 109.46782 * 60.00297 * 17 15 14 46 46 H 1.08995 * 109.47220 * 180.02562 * 17 15 14 47 47 H 0.97006 * 119.99704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9975 -0.8224 5 6 1.6955 2.1180 1.3440 6 1 1.5549 1.3767 2.1307 7 6 0.4505 2.9959 1.2014 8 6 2.9501 2.9862 1.6258 9 6 4.0819 2.0879 1.0674 10 7 3.5042 1.4552 -0.1323 11 6 4.2024 0.9735 -1.1797 12 8 3.6278 0.3809 -2.0725 13 7 5.5375 1.1485 -1.2373 14 6 6.2963 0.6254 -2.3761 15 6 7.7790 0.9575 -2.1967 16 6 8.2923 0.3182 -0.9049 17 6 7.9561 2.4753 -2.1200 18 6 8.5597 0.4189 -3.3678 19 1 8.0501 -0.1115 -4.1586 20 6 9.9254 0.5988 -3.4272 21 7 10.5467 1.2408 -2.4622 22 14 10.8931 -0.0683 -4.8792 23 1 10.9606 0.9635 -5.9451 24 1 12.2680 -0.4167 -4.4397 25 1 10.2196 -1.2820 -5.4072 26 1 -0.3633 -1.0273 0.0271 27 1 -0.3634 0.5372 0.8761 28 1 -0.3633 0.4901 -0.9033 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6000 3.7095 0.3913 32 1 -0.4126 2.3688 0.9787 33 1 0.2775 3.5348 2.1330 34 1 3.0767 3.1545 2.6953 35 1 2.9004 3.9323 1.0868 36 1 4.3604 1.3297 1.7993 37 1 4.9490 2.6908 0.7980 38 1 5.9959 1.6214 -0.5253 39 1 5.9310 1.0811 -3.2964 40 1 6.1699 -0.4560 -2.4310 41 1 9.3486 0.5545 -0.7773 42 1 7.7276 0.7074 -0.0576 43 1 8.1662 -0.7631 -0.9596 44 1 7.5904 2.9307 -3.0403 45 1 7.3915 2.8645 -1.2727 46 1 9.0124 2.7119 -1.9926 47 1 11.5076 1.3670 -2.5039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459237143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:11 Heat of formation + Delta-G solvation = -47.774726 kcal Electronic energy + Delta-G solvation = -23556.667785 eV Core-core repulsion = 20352.762002 eV Total energy + Delta-G solvation = -3203.905783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28257 -38.09607 -36.19994 -33.93299 -32.87683 -32.50315 -30.67526 -28.88591 -26.74792 -25.69692 -25.42542 -24.52917 -23.00862 -22.01502 -20.50694 -19.38676 -18.75772 -17.66423 -16.35172 -15.80494 -15.16701 -14.94859 -14.80688 -14.57269 -13.98673 -13.64978 -13.46952 -13.21071 -12.98515 -12.85141 -12.67319 -12.39750 -12.17529 -12.11246 -11.87243 -11.60006 -11.35600 -11.17386 -11.12891 -11.05619 -10.85017 -10.76975 -10.66704 -10.36087 -10.32562 -10.17028 -9.60127 -9.58199 -9.26668 -8.76223 -8.58403 -8.37309 -8.04946 -5.99771 -4.09481 2.98294 3.30165 3.36971 3.41555 3.67191 4.26713 4.40492 4.44187 4.62183 4.64755 5.03706 5.10606 5.17670 5.24060 5.27042 5.30406 5.37044 5.45056 5.61334 5.65098 5.67669 5.77845 5.80624 5.91230 6.05969 6.12307 6.17904 6.29505 6.36699 6.40862 6.53911 6.61404 6.84551 6.85660 6.97484 7.06361 7.15862 7.39062 7.49793 7.58729 7.72327 8.03823 8.15358 8.41297 8.50809 8.90480 9.11656 9.56105 11.01687 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.003667 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.716937 B = 7632.977016 C = 8125.881398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.163 3.837 4 H 0.071 0.929 5 C -0.100 4.100 6 H 0.085 0.915 7 C -0.145 4.145 8 C -0.128 4.128 9 C 0.100 3.900 10 N -0.640 5.640 11 C 0.716 3.284 12 O -0.595 6.595 13 N -0.732 5.732 14 C 0.150 3.850 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.004 0.996 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.004 0.996 46 H 0.085 0.915 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 3.927 11.180 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.059 3.941 4 H 0.089 0.911 5 C -0.119 4.119 6 H 0.103 0.897 7 C -0.202 4.202 8 C -0.166 4.166 9 C -0.024 4.024 10 N -0.379 5.379 11 C 0.418 3.582 12 O -0.474 6.474 13 N -0.386 5.386 14 C 0.027 3.973 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.023 0.977 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.023 0.977 46 H 0.104 0.896 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.072 3.496 10.456 19.490 hybrid contribution 0.889 -0.119 -0.383 0.975 sum -15.184 3.377 10.073 18.531 Atomic orbital electron populations 1.21798 0.95689 1.01547 1.01617 1.21942 0.95589 0.96676 1.03421 1.21432 0.79631 0.96214 0.96798 0.91116 1.22297 0.95165 0.97683 0.96782 0.89695 1.21865 0.96924 0.99466 1.01943 1.22848 0.94022 0.98334 1.01420 1.22220 0.96854 0.95742 0.87571 1.47651 1.06549 1.64614 1.19124 1.15595 0.82003 0.79513 0.81090 1.90857 1.69556 1.47611 1.39356 1.45547 1.05004 1.60995 1.27102 1.21581 0.92508 0.97370 0.85802 1.18364 0.87892 0.93137 0.95103 1.21808 1.03426 0.98088 0.95314 1.21808 1.03133 0.97162 0.96528 1.20993 0.92084 1.35703 1.05529 0.92407 1.24877 0.97594 0.94988 0.96056 1.69806 1.09080 1.41662 1.31971 0.86571 0.79192 0.79391 0.82720 1.20726 1.21301 1.19891 0.92834 0.92572 0.92725 0.89841 0.92314 0.92367 0.91913 0.92303 0.90038 0.90506 0.91727 0.90944 0.77208 0.93010 0.93006 0.89664 0.97658 0.95479 0.95477 0.97683 0.89645 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.38 37.16 0.35 -1.09 16 2 C -0.14 -1.73 5.41 -26.73 -0.14 -1.88 16 3 C 0.16 2.03 2.53 -66.96 -0.17 1.86 16 4 H 0.07 0.96 7.78 -51.93 -0.40 0.55 16 5 C -0.10 -0.88 2.48 -88.79 -0.22 -1.10 16 6 H 0.08 0.70 7.78 -51.93 -0.40 0.30 16 7 C -0.14 -1.04 8.95 37.16 0.33 -0.71 16 8 C -0.13 -1.10 6.53 -24.58 -0.16 -1.26 16 9 C 0.10 1.12 6.69 -2.53 -0.02 1.11 16 10 N -0.64 -9.45 3.07 -168.70 -0.52 -9.97 16 11 C 0.72 13.69 8.31 -86.92 -0.72 12.97 16 12 O -0.59 -13.42 15.11 5.29 0.08 -13.34 16 13 N -0.73 -14.01 4.92 -65.22 -0.32 -14.33 16 14 C 0.15 3.34 4.50 -4.04 -0.02 3.33 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.42 8.01 -34.44 -0.28 -13.69 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.45 5.75 -51.93 -0.30 0.15 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.35 6.52 -51.93 -0.34 1.02 16 30 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.06 0.43 6.01 -51.93 -0.31 0.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.82 7.10 -51.93 -0.37 0.45 16 38 H 0.39 6.86 4.55 -40.82 -0.19 6.68 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 42 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 46 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -29.29 352.73 -8.82 -38.10 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.25 Total: 4.46 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.62 Total: -2.88 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.57 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.29 -8.82 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds