Wall clock time and date at job start Tue Mar 31 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47300 * 2 1 4 4 H 1.08998 * 109.99723 * 306.59467 * 3 2 1 5 5 C 1.54315 * 109.77073 * 67.74369 * 3 2 1 6 6 H 1.08998 * 111.08235 * 23.40477 * 5 3 2 7 7 C 1.53003 * 110.59056 * 260.14586 * 5 3 2 8 8 C 1.55158 * 102.86146 * 141.88851 * 5 3 2 9 9 C 1.54914 * 101.58139 * 324.30183 * 8 5 3 10 10 N 1.47015 * 109.88377 * 185.49243 * 3 2 1 11 11 C 1.34775 * 125.64626 * 61.68429 * 10 3 2 12 12 O 1.21587 * 120.00037 * 354.17383 * 11 10 3 13 13 N 1.34777 * 119.99994 * 174.17957 * 11 10 3 14 14 C 1.46507 * 119.99960 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46862 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47295 * 59.99797 * 15 14 13 17 17 C 1.53000 * 109.47361 * 299.99568 * 15 14 13 18 18 C 1.50700 * 109.46811 * 179.97438 * 15 14 13 19 19 H 1.07996 * 120.00479 * 359.72619 * 18 15 14 20 20 C 1.37882 * 119.99618 * 179.97438 * 18 15 14 21 21 N 1.31505 * 120.00176 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99706 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47205 * 89.99778 * 22 20 18 24 24 H 1.48493 * 109.47015 * 210.00114 * 22 20 18 25 25 H 1.48504 * 109.46757 * 329.99959 * 22 20 18 26 26 H 1.08996 * 109.47015 * 181.50971 * 1 2 3 27 27 H 1.09003 * 109.47408 * 301.51502 * 1 2 3 28 28 H 1.09003 * 109.47020 * 61.51427 * 1 2 3 29 29 H 1.09001 * 109.47671 * 239.99946 * 2 1 3 30 30 H 1.09003 * 109.47134 * 120.00264 * 2 1 3 31 31 H 1.08992 * 109.47110 * 305.19176 * 7 5 3 32 32 H 1.08991 * 109.47065 * 65.19870 * 7 5 3 33 33 H 1.09001 * 109.46509 * 185.19774 * 7 5 3 34 34 H 1.09000 * 111.00349 * 206.23164 * 8 5 3 35 35 H 1.08998 * 111.03711 * 82.39357 * 8 5 3 36 36 H 1.09000 * 110.36496 * 278.17375 * 9 8 5 37 37 H 1.08996 * 110.45481 * 155.89388 * 9 8 5 38 38 H 0.96998 * 120.00402 * 359.97438 * 13 11 10 39 39 H 1.08994 * 109.47448 * 59.99664 * 14 13 11 40 40 H 1.09007 * 109.46491 * 299.99213 * 14 13 11 41 41 H 1.08995 * 109.47221 * 179.97438 * 16 15 14 42 42 H 1.09001 * 109.47262 * 299.99956 * 16 15 14 43 43 H 1.09001 * 109.47047 * 59.99973 * 16 15 14 44 44 H 1.08999 * 109.46803 * 300.00521 * 17 15 14 45 45 H 1.09001 * 109.46782 * 60.00297 * 17 15 14 46 46 H 1.08995 * 109.47220 * 180.02562 * 17 15 14 47 47 H 0.97006 * 119.99704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5886 1.9975 -0.8224 5 6 1.6955 2.1180 1.3440 6 1 1.5549 1.3767 2.1307 7 6 0.4505 2.9959 1.2014 8 6 2.9501 2.9862 1.6258 9 6 4.0819 2.0879 1.0674 10 7 3.5042 1.4552 -0.1323 11 6 4.2024 0.9735 -1.1797 12 8 3.6278 0.3809 -2.0725 13 7 5.5375 1.1485 -1.2373 14 6 6.2963 0.6254 -2.3761 15 6 7.7790 0.9575 -2.1967 16 6 8.2923 0.3182 -0.9049 17 6 7.9561 2.4753 -2.1200 18 6 8.5597 0.4189 -3.3678 19 1 8.0501 -0.1115 -4.1586 20 6 9.9254 0.5988 -3.4272 21 7 10.5467 1.2408 -2.4622 22 14 10.8931 -0.0683 -4.8792 23 1 10.9606 0.9635 -5.9451 24 1 12.2680 -0.4167 -4.4397 25 1 10.2196 -1.2820 -5.4072 26 1 -0.3633 -1.0273 0.0271 27 1 -0.3634 0.5372 0.8761 28 1 -0.3633 0.4901 -0.9033 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6000 3.7095 0.3913 32 1 -0.4126 2.3688 0.9787 33 1 0.2775 3.5348 2.1330 34 1 3.0767 3.1545 2.6953 35 1 2.9004 3.9323 1.0868 36 1 4.3604 1.3297 1.7993 37 1 4.9490 2.6908 0.7980 38 1 5.9959 1.6214 -0.5253 39 1 5.9310 1.0811 -3.2964 40 1 6.1699 -0.4560 -2.4310 41 1 9.3486 0.5545 -0.7773 42 1 7.7276 0.7074 -0.0576 43 1 8.1662 -0.7631 -0.9596 44 1 7.5904 2.9307 -3.0403 45 1 7.3915 2.8645 -1.2727 46 1 9.0124 2.7119 -1.9926 47 1 11.5076 1.3670 -2.5039 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459237143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:10 Heat of formation + Delta-G solvation = -63.878837 kcal Electronic energy + Delta-G solvation = -23557.366111 eV Core-core repulsion = 20352.762002 eV Total energy + Delta-G solvation = -3204.604109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52226 -39.41548 -37.96333 -35.28813 -34.36243 -33.45834 -32.47250 -29.73702 -27.91936 -27.58538 -27.31050 -26.10473 -23.99285 -22.98722 -21.48279 -20.68985 -20.58079 -18.99900 -17.81957 -17.44107 -16.64722 -16.57276 -16.06367 -15.67994 -15.42820 -14.94380 -14.79607 -14.55961 -14.31589 -14.02699 -13.95140 -13.58019 -13.37696 -13.17960 -13.10608 -12.89425 -12.71984 -12.64144 -12.59823 -12.50010 -12.26481 -12.14019 -11.97841 -11.78893 -11.54222 -11.50038 -11.37086 -11.20251 -10.93152 -10.72001 -10.40668 -10.09801 -9.41238 -8.02833 -6.18524 1.42621 1.45038 1.53476 1.69183 2.17190 2.45757 3.12295 3.20701 3.59177 3.65129 3.87681 4.15102 4.23667 4.35194 4.40755 4.49926 4.50713 4.52380 4.57653 4.68412 4.72952 4.82756 4.90768 4.94130 4.97689 5.03376 5.06417 5.08777 5.13336 5.17676 5.19366 5.23301 5.31083 5.36465 5.44690 5.52221 5.58449 5.62291 5.65355 5.66570 6.12623 6.12983 6.20368 6.42816 6.85036 7.05694 7.49048 7.61993 8.96361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.003667 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.716937 B = 7632.977016 C = 8125.881398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.154 3.846 4 H 0.055 0.945 5 C -0.089 4.089 6 H 0.099 0.901 7 C -0.142 4.142 8 C -0.118 4.118 9 C 0.088 3.912 10 N -0.637 5.637 11 C 0.710 3.290 12 O -0.637 6.637 13 N -0.726 5.726 14 C 0.168 3.832 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.898 5.898 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.402 0.598 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.990 4.977 13.460 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.051 3.949 4 H 0.073 0.927 5 C -0.108 4.108 6 H 0.118 0.882 7 C -0.199 4.199 8 C -0.156 4.156 9 C -0.034 4.034 10 N -0.375 5.375 11 C 0.411 3.589 12 O -0.519 6.519 13 N -0.381 5.381 14 C 0.044 3.956 15 C 0.052 3.948 16 C -0.175 4.175 17 C -0.175 4.175 18 C -0.569 4.569 19 H 0.062 0.938 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.773 3.227 23 H -0.204 1.204 24 H -0.207 1.207 25 H -0.202 1.202 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.240 0.760 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.139 4.578 12.792 21.871 hybrid contribution 1.178 -0.446 -1.070 1.653 sum -15.962 4.131 11.722 20.230 Atomic orbital electron populations 1.21756 0.93320 1.02287 1.02567 1.21873 0.97675 0.96389 1.01376 1.21712 0.78092 0.96345 0.98768 0.92714 1.22291 0.96091 0.97979 0.94445 0.88241 1.21857 0.96076 0.99205 1.02775 1.22868 0.92211 0.97431 1.03077 1.22558 0.98036 0.96502 0.86288 1.47727 1.07677 1.63292 1.18770 1.15770 0.81837 0.79490 0.81767 1.90827 1.70272 1.49451 1.41399 1.45254 1.05173 1.61197 1.26513 1.21127 0.92091 0.96094 0.86302 1.18360 0.88233 0.93620 0.94636 1.21636 1.02414 0.97486 0.95937 1.21636 1.02085 0.96517 0.97235 1.21255 0.92899 1.36309 1.06397 0.93821 1.25446 0.98236 0.95247 0.98118 1.69900 1.09234 1.41790 1.32783 0.85742 0.78069 0.78661 0.80237 1.20440 1.20661 1.20166 0.92356 0.90021 0.93210 0.94312 0.91844 0.93121 0.91437 0.90225 0.86979 0.90469 0.90538 0.90851 0.76044 0.94854 0.94873 0.91699 0.94798 0.96434 0.96436 0.94833 0.91674 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.38 71.98 0.67 -1.87 16 2 C -0.13 -3.35 5.41 30.60 0.17 -3.18 16 3 C 0.15 3.69 2.53 45.34 0.11 3.80 16 4 H 0.05 1.48 7.78 -2.39 -0.02 1.46 16 5 C -0.09 -1.28 2.48 -9.61 -0.02 -1.31 16 6 H 0.10 1.21 7.78 -2.39 -0.02 1.19 16 7 C -0.14 -1.56 8.95 71.98 0.64 -0.91 16 8 C -0.12 -1.58 6.53 31.99 0.21 -1.38 16 9 C 0.09 1.77 6.69 86.86 0.58 2.35 16 10 N -0.64 -18.34 3.07 -805.91 -2.47 -20.81 16 11 C 0.71 27.52 8.31 179.05 1.49 29.01 16 12 O -0.64 -29.98 15.11 -3.99 -0.06 -30.04 16 13 N -0.73 -27.78 4.92 -478.52 -2.35 -30.13 16 14 C 0.17 7.68 4.50 86.38 0.39 8.07 16 15 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 16 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 17 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 18 C -0.53 -28.74 8.01 25.60 0.21 -28.54 16 19 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 20 C 0.03 1.57 5.15 84.66 0.44 2.00 16 21 N -0.90 -48.24 9.35 21.45 0.20 -48.04 16 22 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.05 5.75 -2.39 -0.01 1.04 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 1.31 6.52 -2.39 -0.02 1.30 16 30 H 0.06 1.48 8.01 -2.39 -0.02 1.46 16 31 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 32 H 0.07 0.69 6.01 -2.39 -0.01 0.67 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.47 7.10 -2.39 -0.02 1.45 16 38 H 0.40 13.55 4.55 -92.71 -0.42 13.13 16 39 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 42 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 46 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 47 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 Total: -1.00 -65.28 352.73 3.88 -61.40 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.51 Total: 21.45 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.02 Total: 1.00 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.62 Total: -98.98 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.06 Total: -30.04 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.28 3.88 -61.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.480 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds