Wall clock time and date at job start Tue Mar 31 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47085 * 2 1 4 4 H 1.09000 * 109.99723 * 53.21811 * 3 2 1 5 5 C 1.54339 * 109.98898 * 292.18437 * 3 2 1 6 6 H 1.08997 * 110.51477 * 336.97711 * 5 3 2 7 7 C 1.53000 * 110.99799 * 100.12648 * 5 3 2 8 8 C 1.55162 * 103.01719 * 218.66424 * 5 3 2 9 9 C 1.54903 * 101.57961 * 35.31157 * 8 5 3 10 10 N 1.47025 * 109.88327 * 174.31912 * 3 2 1 11 11 C 1.34773 * 125.64330 * 298.39667 * 10 3 2 12 12 O 1.21581 * 120.00653 * 4.65094 * 11 10 3 13 13 N 1.34778 * 119.99551 * 184.64945 * 11 10 3 14 14 C 1.46504 * 120.00033 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47095 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47191 * 60.00015 * 15 14 13 17 17 C 1.52999 * 109.47386 * 299.99792 * 15 14 13 18 18 C 1.50701 * 109.46860 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00050 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99740 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00183 * 1.30843 * 20 18 15 22 22 Si 1.86804 * 119.99775 * 181.30439 * 20 18 15 23 23 H 1.48496 * 109.47043 * 270.00085 * 22 20 18 24 24 H 1.48497 * 109.47064 * 30.00686 * 22 20 18 25 25 H 1.48504 * 109.46579 * 150.00298 * 22 20 18 26 26 H 1.09001 * 109.47020 * 65.64570 * 1 2 3 27 27 H 1.08997 * 109.46860 * 185.64374 * 1 2 3 28 28 H 1.08995 * 109.47400 * 305.64750 * 1 2 3 29 29 H 1.09004 * 109.47352 * 240.00531 * 2 1 3 30 30 H 1.08997 * 109.47214 * 119.99877 * 2 1 3 31 31 H 1.09000 * 109.46747 * 175.23293 * 7 5 3 32 32 H 1.08997 * 109.47454 * 295.22769 * 7 5 3 33 33 H 1.09003 * 109.47006 * 55.23639 * 7 5 3 34 34 H 1.09003 * 110.99958 * 277.23034 * 8 5 3 35 35 H 1.09002 * 111.00172 * 153.38290 * 8 5 3 36 36 H 1.09007 * 110.36152 * 204.15419 * 9 8 5 37 37 H 1.09000 * 110.46419 * 81.87898 * 9 8 5 38 38 H 0.97003 * 120.00097 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.47262 * 60.00145 * 14 13 11 40 40 H 1.09003 * 109.46796 * 299.99894 * 14 13 11 41 41 H 1.08997 * 109.47306 * 173.12017 * 16 15 14 42 42 H 1.09001 * 109.46795 * 293.12642 * 16 15 14 43 43 H 1.08999 * 109.47015 * 53.12141 * 16 15 14 44 44 H 1.09004 * 109.46977 * 306.86340 * 17 15 14 45 45 H 1.09006 * 109.46735 * 66.85659 * 17 15 14 46 46 H 1.08989 * 109.47350 * 186.85636 * 17 15 14 47 47 H 0.96998 * 119.99680 * 356.85730 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5860 1.9984 0.8204 5 6 1.6995 2.1225 -1.3430 6 1 1.5552 1.3756 -2.1236 7 6 0.4602 3.0098 -1.2097 8 6 2.9604 2.9801 -1.6302 9 6 4.0856 2.0768 -1.0667 10 7 3.5038 1.4554 0.1369 11 6 4.1988 0.9735 1.1862 12 8 3.6189 0.3993 2.0875 13 7 5.5367 1.1281 1.2365 14 6 6.2923 0.6037 2.3769 15 6 7.7794 0.9097 2.1875 16 6 7.9808 2.4236 2.0948 17 6 8.2760 0.2494 0.8998 18 6 8.5565 0.3709 3.3609 19 1 8.0412 -0.1384 4.1618 20 6 9.9253 0.5282 3.4119 21 7 10.5498 1.1709 2.4492 22 14 10.8930 -0.1715 4.8484 23 1 10.9852 0.8463 5.9257 24 1 10.2042 -1.3806 5.3671 25 1 12.2589 -0.5366 4.3941 26 1 -0.3633 0.4238 -0.9362 27 1 -0.3633 -1.0227 0.1011 28 1 -0.3634 0.5989 0.8350 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2921 3.5420 -2.1459 32 1 -0.4075 2.3903 -0.9831 33 1 0.6133 3.7292 -0.4052 34 1 2.9170 3.9294 -1.0962 35 1 3.0878 3.1411 -2.7007 36 1 4.9561 2.6767 -0.8008 37 1 4.3604 1.3123 -1.7934 38 1 5.9995 1.5858 0.5173 39 1 6.1492 -0.4748 2.4427 40 1 5.9382 1.0739 3.2944 41 1 9.0473 2.6482 2.0828 42 1 7.5207 2.7960 1.1796 43 1 7.5179 2.9051 2.9562 44 1 8.0225 -0.8107 0.9139 45 1 7.8015 0.7250 0.0413 46 1 9.3574 0.3635 0.8266 47 1 10.0538 1.4945 1.6810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459237145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:14 Heat of formation + Delta-G solvation = -42.043077 kcal Electronic energy + Delta-G solvation = -23612.111099 eV Core-core repulsion = 20408.453859 eV Total energy + Delta-G solvation = -3203.657240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35114 -38.21641 -36.61920 -34.04782 -33.08477 -32.57907 -30.39301 -28.94614 -26.81405 -26.03749 -25.67988 -24.19041 -23.04223 -22.06527 -20.55159 -19.50585 -18.87762 -17.94549 -16.51515 -16.41738 -15.29682 -14.99126 -14.71169 -14.38833 -13.77804 -13.74503 -13.61072 -13.30615 -13.07601 -12.87386 -12.70559 -12.49248 -12.45173 -12.18251 -11.95003 -11.65246 -11.52100 -11.25864 -11.17556 -11.11273 -10.91401 -10.81028 -10.61338 -10.59944 -10.39323 -10.09686 -9.86938 -9.66026 -9.48544 -8.66423 -8.43862 -8.31001 -8.15166 -6.25032 -4.09775 2.90403 3.44432 3.47497 3.59134 3.63208 4.20730 4.37411 4.48488 4.57111 4.59267 4.97899 5.07829 5.12613 5.19435 5.25942 5.31953 5.34165 5.40415 5.54861 5.59210 5.63599 5.73381 5.78014 5.85686 5.98938 6.01385 6.07530 6.20551 6.21995 6.27410 6.29758 6.51312 6.57878 6.67068 6.74065 6.82657 6.97376 7.08534 7.15549 7.39507 7.51719 7.68032 8.20855 8.38761 8.42136 8.84867 9.02434 9.60980 11.01003 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.003682 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.226509 B = 7603.449836 C = 8097.282610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.163 3.837 4 H 0.071 0.929 5 C -0.100 4.100 6 H 0.084 0.916 7 C -0.143 4.143 8 C -0.128 4.128 9 C 0.099 3.901 10 N -0.640 5.640 11 C 0.717 3.283 12 O -0.593 6.593 13 N -0.734 5.734 14 C 0.158 3.842 15 C 0.041 3.959 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.584 4.584 19 H 0.052 0.948 20 C 0.025 3.975 21 N -0.919 5.919 22 Si 1.068 2.932 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.013 0.987 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.014 0.986 46 H 0.070 0.930 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 3.693 -11.058 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.059 3.941 4 H 0.089 0.911 5 C -0.119 4.119 6 H 0.102 0.898 7 C -0.201 4.201 8 C -0.166 4.166 9 C -0.024 4.024 10 N -0.379 5.379 11 C 0.419 3.581 12 O -0.472 6.472 13 N -0.389 5.389 14 C 0.035 3.965 15 C 0.040 3.960 16 C -0.202 4.202 17 C -0.201 4.201 18 C -0.622 4.622 19 H 0.071 0.929 20 C -0.178 4.178 21 N -0.560 5.560 22 Si 0.897 3.103 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.211 1.211 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.032 0.968 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.544 3.110 -9.643 18.555 hybrid contribution -1.256 0.331 -1.040 1.664 sum -16.800 3.440 -10.683 20.204 Atomic orbital electron populations 1.21764 0.95585 1.01640 1.01476 1.21938 0.95684 0.96607 1.03390 1.21456 0.79560 0.96199 0.96899 0.91094 1.22295 0.95194 0.97662 0.96768 0.89757 1.21828 0.96910 0.99376 1.01968 1.22844 0.93976 0.98350 1.01413 1.22223 0.96870 0.95860 0.87470 1.47658 1.06608 1.64824 1.18784 1.15575 0.81963 0.79391 0.81215 1.90865 1.69297 1.48295 1.38736 1.45535 1.04803 1.62007 1.26535 1.21457 0.91613 0.97519 0.85867 1.18537 0.89675 0.92524 0.95259 1.22050 1.02821 0.97963 0.97345 1.22034 1.02767 0.99081 0.96174 1.21785 0.94187 1.40413 1.05864 0.92920 1.25673 0.95192 0.94989 1.01972 1.70850 1.40544 1.34820 1.09763 0.83561 0.75791 0.76127 0.74868 1.21510 1.21458 1.21101 0.92738 0.92775 0.92673 0.92283 0.89887 0.92248 0.91968 0.92375 0.90481 0.89983 0.91032 0.91713 0.77360 0.92805 0.92791 0.90860 0.96789 0.94495 0.94452 0.96686 0.91092 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.08 37.16 0.34 -1.06 16 2 C -0.14 -1.71 5.41 -26.73 -0.14 -1.85 16 3 C 0.16 2.00 2.53 -66.94 -0.17 1.83 16 4 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16 5 C -0.10 -0.87 2.49 -88.77 -0.22 -1.09 16 6 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 7 C -0.14 -1.02 9.00 37.16 0.33 -0.68 16 8 C -0.13 -1.07 6.53 -24.58 -0.16 -1.23 16 9 C 0.10 1.10 6.67 -2.53 -0.02 1.08 16 10 N -0.64 -9.31 3.06 -168.68 -0.52 -9.83 16 11 C 0.72 13.56 8.30 -86.92 -0.72 12.84 16 12 O -0.59 -13.30 15.14 5.29 0.08 -13.22 16 13 N -0.73 -13.86 5.00 -65.22 -0.33 -14.18 16 14 C 0.16 3.51 4.50 -4.04 -0.02 3.50 16 15 C 0.04 0.97 0.50 -155.66 -0.08 0.89 16 16 C -0.14 -3.25 7.89 37.16 0.29 -2.96 16 17 C -0.14 -3.21 7.89 37.16 0.29 -2.92 16 18 C -0.58 -15.79 8.01 -34.44 -0.28 -16.06 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.03 0.70 5.11 -17.82 -0.09 0.60 16 21 N -0.92 -26.05 12.14 55.43 0.67 -25.38 16 22 Si 1.07 24.73 29.90 -169.99 -5.08 19.65 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.43 6.41 -51.93 -0.33 0.09 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 30 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 6.26 -51.93 -0.33 0.09 16 33 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.78 7.12 -51.92 -0.37 0.41 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 6.68 4.68 -40.82 -0.19 6.49 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.82 5.19 -51.93 -0.27 1.55 16 42 H 0.01 0.26 7.05 -51.93 -0.37 -0.10 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 46 H 0.07 1.75 5.25 -51.93 -0.27 1.48 16 47 H 0.28 7.69 3.54 -40.82 -0.14 7.54 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -30.73 350.30 -8.58 -39.31 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.05 Total: 5.49 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.64 Total: -7.12 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.17 Total: -49.39 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.73 -8.58 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.737 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds