Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47085 * 2 1 4 4 H 1.09000 * 109.99723 * 53.21811 * 3 2 1 5 5 C 1.54339 * 109.98898 * 292.18437 * 3 2 1 6 6 H 1.08997 * 110.51477 * 336.97711 * 5 3 2 7 7 C 1.53000 * 110.99799 * 100.12648 * 5 3 2 8 8 C 1.55162 * 103.01719 * 218.66424 * 5 3 2 9 9 C 1.54903 * 101.57961 * 35.31157 * 8 5 3 10 10 N 1.47025 * 109.88327 * 174.31912 * 3 2 1 11 11 C 1.34773 * 125.64330 * 298.39667 * 10 3 2 12 12 O 1.21581 * 120.00653 * 4.65094 * 11 10 3 13 13 N 1.34778 * 119.99551 * 184.64945 * 11 10 3 14 14 C 1.46504 * 120.00033 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47095 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.47191 * 60.00015 * 15 14 13 17 17 C 1.52999 * 109.47386 * 299.99792 * 15 14 13 18 18 C 1.50701 * 109.46860 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00050 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99740 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00183 * 1.30843 * 20 18 15 22 22 Si 1.86804 * 119.99775 * 181.30439 * 20 18 15 23 23 H 1.48496 * 109.47043 * 270.00085 * 22 20 18 24 24 H 1.48497 * 109.47064 * 30.00686 * 22 20 18 25 25 H 1.48504 * 109.46579 * 150.00298 * 22 20 18 26 26 H 1.09001 * 109.47020 * 65.64570 * 1 2 3 27 27 H 1.08997 * 109.46860 * 185.64374 * 1 2 3 28 28 H 1.08995 * 109.47400 * 305.64750 * 1 2 3 29 29 H 1.09004 * 109.47352 * 240.00531 * 2 1 3 30 30 H 1.08997 * 109.47214 * 119.99877 * 2 1 3 31 31 H 1.09000 * 109.46747 * 175.23293 * 7 5 3 32 32 H 1.08997 * 109.47454 * 295.22769 * 7 5 3 33 33 H 1.09003 * 109.47006 * 55.23639 * 7 5 3 34 34 H 1.09003 * 110.99958 * 277.23034 * 8 5 3 35 35 H 1.09002 * 111.00172 * 153.38290 * 8 5 3 36 36 H 1.09007 * 110.36152 * 204.15419 * 9 8 5 37 37 H 1.09000 * 110.46419 * 81.87898 * 9 8 5 38 38 H 0.97003 * 120.00097 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.47262 * 60.00145 * 14 13 11 40 40 H 1.09003 * 109.46796 * 299.99894 * 14 13 11 41 41 H 1.08997 * 109.47306 * 173.12017 * 16 15 14 42 42 H 1.09001 * 109.46795 * 293.12642 * 16 15 14 43 43 H 1.08999 * 109.47015 * 53.12141 * 16 15 14 44 44 H 1.09004 * 109.46977 * 306.86340 * 17 15 14 45 45 H 1.09006 * 109.46735 * 66.85659 * 17 15 14 46 46 H 1.08989 * 109.47350 * 186.85636 * 17 15 14 47 47 H 0.96998 * 119.99680 * 356.85730 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5860 1.9984 0.8204 5 6 1.6995 2.1225 -1.3430 6 1 1.5552 1.3756 -2.1236 7 6 0.4602 3.0098 -1.2097 8 6 2.9604 2.9801 -1.6302 9 6 4.0856 2.0768 -1.0667 10 7 3.5038 1.4554 0.1369 11 6 4.1988 0.9735 1.1862 12 8 3.6189 0.3993 2.0875 13 7 5.5367 1.1281 1.2365 14 6 6.2923 0.6037 2.3769 15 6 7.7794 0.9097 2.1875 16 6 7.9808 2.4236 2.0948 17 6 8.2760 0.2494 0.8998 18 6 8.5565 0.3709 3.3609 19 1 8.0412 -0.1384 4.1618 20 6 9.9253 0.5282 3.4119 21 7 10.5498 1.1709 2.4492 22 14 10.8930 -0.1715 4.8484 23 1 10.9852 0.8463 5.9257 24 1 10.2042 -1.3806 5.3671 25 1 12.2589 -0.5366 4.3941 26 1 -0.3633 0.4238 -0.9362 27 1 -0.3633 -1.0227 0.1011 28 1 -0.3634 0.5989 0.8350 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2921 3.5420 -2.1459 32 1 -0.4075 2.3903 -0.9831 33 1 0.6133 3.7292 -0.4052 34 1 2.9170 3.9294 -1.0962 35 1 3.0878 3.1411 -2.7007 36 1 4.9561 2.6767 -0.8008 37 1 4.3604 1.3123 -1.7934 38 1 5.9995 1.5858 0.5173 39 1 6.1492 -0.4748 2.4427 40 1 5.9382 1.0739 3.2944 41 1 9.0473 2.6482 2.0828 42 1 7.5207 2.7960 1.1796 43 1 7.5179 2.9051 2.9562 44 1 8.0225 -0.8107 0.9139 45 1 7.8015 0.7250 0.0413 46 1 9.3574 0.3635 0.8266 47 1 10.0538 1.4945 1.6810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459237145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -59.475874 kcal Electronic energy + Delta-G solvation = -23612.867042 eV Core-core repulsion = 20408.453859 eV Total energy + Delta-G solvation = -3204.413183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58937 -39.57172 -38.35203 -35.48484 -34.44818 -33.50668 -32.21172 -29.78564 -28.12792 -27.89674 -27.31862 -25.87006 -24.03242 -23.03114 -21.55950 -20.80061 -20.72841 -19.36545 -18.34318 -17.56762 -16.69851 -16.14997 -15.97820 -15.68062 -15.61935 -15.02895 -14.80876 -14.57384 -14.43604 -14.29089 -14.00520 -13.60971 -13.44052 -13.31333 -13.25597 -12.92579 -12.79641 -12.67915 -12.54751 -12.54560 -12.43265 -12.01857 -11.92512 -11.82235 -11.74283 -11.55975 -11.43590 -11.37193 -11.02139 -10.45049 -10.36525 -10.18988 -9.48223 -8.39480 -6.25653 1.55586 1.61598 1.63015 1.81027 2.10457 2.59510 3.04450 3.24637 3.54664 3.60852 3.83921 4.11140 4.14788 4.20677 4.31774 4.33153 4.44252 4.46978 4.48831 4.54079 4.68632 4.75780 4.79302 4.79680 4.85053 4.90882 4.92019 4.95576 5.04487 5.09777 5.13655 5.16201 5.17973 5.20176 5.27621 5.39639 5.45243 5.49039 5.53676 5.62051 5.80534 6.05586 6.15832 6.30406 6.73271 6.98926 7.49868 7.55160 8.88443 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.003682 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.226509 B = 7603.449836 C = 8097.282610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.154 3.846 4 H 0.054 0.946 5 C -0.089 4.089 6 H 0.099 0.901 7 C -0.141 4.141 8 C -0.118 4.118 9 C 0.088 3.912 10 N -0.636 5.636 11 C 0.710 3.290 12 O -0.636 6.636 13 N -0.727 5.727 14 C 0.177 3.823 15 C 0.036 3.964 16 C -0.133 4.133 17 C -0.131 4.131 18 C -0.604 4.604 19 H 0.036 0.964 20 C -0.014 4.014 21 N -0.938 5.938 22 Si 1.107 2.893 23 H -0.278 1.278 24 H -0.280 1.280 25 H -0.283 1.283 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.402 0.598 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.027 0.973 44 H 0.029 0.971 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 4.739 -13.409 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.050 3.950 4 H 0.073 0.927 5 C -0.108 4.108 6 H 0.117 0.883 7 C -0.198 4.198 8 C -0.156 4.156 9 C -0.034 4.034 10 N -0.374 5.374 11 C 0.412 3.588 12 O -0.518 6.518 13 N -0.382 5.382 14 C 0.053 3.947 15 C 0.035 3.965 16 C -0.191 4.191 17 C -0.189 4.189 18 C -0.643 4.643 19 H 0.055 0.945 20 C -0.214 4.214 21 N -0.579 5.579 22 Si 0.931 3.069 23 H -0.204 1.204 24 H -0.206 1.206 25 H -0.208 1.208 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.239 0.761 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.750 4.192 -12.056 21.059 hybrid contribution -0.956 0.008 -0.342 1.016 sum -17.706 4.200 -12.398 22.020 Atomic orbital electron populations 1.21722 0.93240 1.02084 1.02711 1.21870 0.97751 0.96324 1.01356 1.21733 0.78044 0.96324 0.98849 0.92738 1.22289 0.96120 0.97975 0.94408 0.88312 1.21824 0.96098 0.99088 1.02799 1.22866 0.92187 0.97439 1.03071 1.22569 0.98039 0.96661 0.86161 1.47734 1.07724 1.63446 1.18455 1.15754 0.81799 0.79377 0.81893 1.90834 1.70030 1.50169 1.40815 1.45213 1.04939 1.62190 1.25899 1.20974 0.91224 0.96149 0.86391 1.18538 0.89934 0.93243 0.94795 1.21885 1.01506 0.97031 0.98635 1.21870 1.01472 0.98839 0.96755 1.22093 0.94870 1.40561 1.06729 0.94525 1.26767 0.96284 0.94843 1.03498 1.70907 1.40865 1.35792 1.10332 0.83041 0.74822 0.76151 0.72922 1.20409 1.20572 1.20830 0.90143 0.92496 0.93017 0.91777 0.94370 0.90184 0.91508 0.93145 0.90463 0.86921 0.90831 0.90472 0.76067 0.94801 0.94819 0.92958 0.93510 0.95337 0.95196 0.93401 0.93156 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.08 71.98 0.65 -1.82 16 2 C -0.13 -3.29 5.41 30.60 0.17 -3.12 16 3 C 0.15 3.62 2.53 45.35 0.11 3.73 16 4 H 0.05 1.46 7.80 -2.39 -0.02 1.44 16 5 C -0.09 -1.25 2.49 -9.60 -0.02 -1.27 16 6 H 0.10 1.17 7.75 -2.39 -0.02 1.15 16 7 C -0.14 -1.51 9.00 71.98 0.65 -0.86 16 8 C -0.12 -1.53 6.53 31.99 0.21 -1.32 16 9 C 0.09 1.70 6.67 86.85 0.58 2.28 16 10 N -0.64 -17.97 3.06 -805.85 -2.47 -20.44 16 11 C 0.71 27.18 8.30 179.05 1.49 28.67 16 12 O -0.64 -29.75 15.14 -3.97 -0.06 -29.81 16 13 N -0.73 -27.30 5.00 -478.53 -2.39 -29.70 16 14 C 0.18 8.05 4.50 86.38 0.39 8.44 16 15 C 0.04 1.70 0.50 -52.93 -0.03 1.67 16 16 C -0.13 -5.94 7.89 71.98 0.57 -5.37 16 17 C -0.13 -5.85 7.89 71.98 0.57 -5.28 16 18 C -0.60 -33.30 8.01 25.60 0.21 -33.10 16 19 H 0.04 2.08 7.74 -2.91 -0.02 2.06 16 20 C -0.01 -0.78 5.11 84.65 0.43 -0.35 16 21 N -0.94 -53.36 12.14 21.45 0.26 -53.10 16 22 Si 1.11 50.07 29.90 68.60 2.05 52.12 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H 0.08 1.01 6.41 -2.39 -0.02 0.99 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.46 8.01 -2.39 -0.02 1.45 16 30 H 0.04 1.28 6.54 -2.39 -0.02 1.26 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.67 6.26 -2.39 -0.01 0.65 16 33 H 0.05 0.63 8.11 -2.39 -0.02 0.61 16 34 H 0.08 1.04 8.05 -2.39 -0.02 1.02 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.41 7.12 -2.38 -0.02 1.39 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.40 13.09 4.68 -92.71 -0.43 12.66 16 39 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.03 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.05 2.58 5.19 -2.39 -0.01 2.57 16 42 H 0.05 1.74 7.05 -2.39 -0.02 1.72 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.05 1.77 7.05 -2.38 -0.02 1.75 16 46 H 0.05 2.47 5.25 -2.39 -0.01 2.45 16 47 H 0.28 15.39 3.54 -92.71 -0.33 15.06 16 Total: -1.00 -68.95 350.30 4.30 -64.65 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.95 Total: 23.98 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.97 Total: -7.71 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -4.60 Total: -103.23 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -68.95 4.30 -64.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.170 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds