Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46942 * 2 1 4 4 H 1.09001 * 109.99632 * 317.01483 * 3 2 1 5 5 C 1.54330 * 109.78156 * 78.17640 * 3 2 1 6 6 H 1.08997 * 110.52105 * 215.81140 * 5 3 2 7 7 C 1.53010 * 110.85044 * 339.03317 * 5 3 2 8 8 C 1.55157 * 103.01991 * 97.49657 * 5 3 2 9 9 C 1.54906 * 101.58263 * 35.30810 * 8 5 3 10 10 N 1.47014 * 109.88156 * 195.91873 * 3 2 1 11 11 C 1.34784 * 125.64832 * 59.56005 * 10 3 2 12 12 O 1.21586 * 119.99777 * 354.70445 * 11 10 3 13 13 N 1.34781 * 119.99930 * 174.70710 * 11 10 3 14 14 C 1.46493 * 119.99737 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47311 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47115 * 300.00426 * 15 14 13 17 17 C 1.53004 * 109.46960 * 59.99566 * 15 14 13 18 18 C 1.50697 * 109.47428 * 179.97438 * 15 14 13 19 19 H 1.07993 * 119.99986 * 0.02562 * 18 15 14 20 20 C 1.37881 * 119.99973 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00105 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00173 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47481 * 89.99688 * 22 20 18 24 24 H 1.48499 * 109.47326 * 210.00099 * 22 20 18 25 25 H 1.48500 * 109.47026 * 330.00073 * 22 20 18 26 26 H 1.08996 * 109.46992 * 170.13532 * 1 2 3 27 27 H 1.09003 * 109.47445 * 290.13382 * 1 2 3 28 28 H 1.09005 * 109.47369 * 50.13311 * 1 2 3 29 29 H 1.08994 * 109.47088 * 240.00341 * 2 1 3 30 30 H 1.08996 * 109.47336 * 119.99282 * 2 1 3 31 31 H 1.08997 * 109.47068 * 166.84824 * 7 5 3 32 32 H 1.09000 * 109.46927 * 286.84758 * 7 5 3 33 33 H 1.08994 * 109.46972 * 46.84601 * 7 5 3 34 34 H 1.09008 * 111.00304 * 277.23561 * 8 5 3 35 35 H 1.08994 * 111.04074 * 153.39792 * 8 5 3 36 36 H 1.08997 * 110.37302 * 204.15496 * 9 8 5 37 37 H 1.09000 * 110.46362 * 81.86990 * 9 8 5 38 38 H 0.96998 * 119.99996 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.47361 * 59.99839 * 14 13 11 40 40 H 1.09004 * 109.47452 * 300.00101 * 14 13 11 41 41 H 1.08998 * 109.47365 * 59.99355 * 16 15 14 42 42 H 1.09004 * 109.47285 * 179.97438 * 16 15 14 43 43 H 1.09006 * 109.46610 * 299.99580 * 16 15 14 44 44 H 1.09004 * 109.46639 * 60.00658 * 17 15 14 45 45 H 1.09004 * 109.47008 * 180.02562 * 17 15 14 46 46 H 1.08998 * 109.47256 * 300.00483 * 17 15 14 47 47 H 0.96992 * 120.00322 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4577 2.0438 -0.6984 5 6 1.9335 2.0342 1.4214 6 1 1.6697 3.0908 1.3767 7 6 0.9177 1.2562 2.2605 8 6 3.3672 1.8497 1.9851 9 6 4.2309 2.0801 0.7200 10 7 3.4601 1.4708 -0.3792 11 6 3.9719 1.0198 -1.5416 12 8 3.2542 0.4520 -2.3421 13 7 5.2792 1.1981 -1.8166 14 6 5.8355 0.7073 -3.0798 15 6 7.3287 1.0353 -3.1411 16 6 7.5222 2.5505 -3.0530 17 6 8.0474 0.3606 -1.9709 18 6 7.9012 0.5299 -4.4403 19 1 7.2637 0.0256 -5.1513 20 6 9.2388 0.7113 -4.7211 21 7 10.0151 1.3258 -3.8554 22 14 9.9483 0.0855 -6.3317 23 1 9.8426 1.1470 -7.3649 24 1 11.3756 -0.2753 -6.1370 25 1 9.1907 -1.1127 -6.7739 26 1 -0.3633 -1.0124 -0.1761 27 1 -0.3634 0.3537 0.9649 28 1 -0.3634 0.6588 -0.7888 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.0254 1.5322 3.3094 32 1 -0.0910 1.4953 1.9236 33 1 1.0950 0.1869 2.1461 34 1 3.5069 0.8414 2.3752 35 1 3.5864 2.5957 2.7490 36 1 5.1969 1.5864 0.8250 37 1 4.3681 3.1466 0.5413 38 1 5.8517 1.6514 -1.1781 39 1 5.3232 1.1876 -3.9134 40 1 5.6982 -0.3722 -3.1424 41 1 7.1082 2.9156 -2.1132 42 1 8.5860 2.7841 -3.0962 43 1 7.0101 3.0311 -3.8867 44 1 7.9097 -0.7188 -2.0337 45 1 9.1112 0.5946 -2.0143 46 1 7.6335 0.7258 -1.0311 47 1 10.9560 1.4537 -4.0531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459237147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = -30.653460 kcal Electronic energy + Delta-G solvation = -23640.282232 eV Core-core repulsion = 20437.118884 eV Total energy + Delta-G solvation = -3203.163349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39741 -38.23146 -36.21357 -34.25689 -32.98349 -32.08582 -30.69742 -28.49560 -27.06795 -25.69643 -25.44352 -24.55427 -22.90866 -22.57521 -20.06247 -19.14628 -18.71032 -17.91852 -16.31336 -15.87927 -15.39391 -15.26846 -14.69194 -14.46555 -13.97261 -13.69139 -13.41700 -13.38866 -12.90339 -12.83278 -12.61887 -12.30632 -12.14155 -11.80030 -11.75752 -11.70902 -11.37499 -11.27852 -11.16844 -10.94583 -10.84278 -10.66913 -10.50553 -10.35383 -10.21648 -10.14403 -9.60059 -9.55281 -9.26563 -8.76304 -8.57908 -8.37368 -8.05595 -5.99795 -4.09527 2.98519 3.30116 3.36931 3.41543 3.66840 4.26456 4.40272 4.45147 4.62130 4.68405 4.96799 5.10208 5.15238 5.25089 5.26977 5.39917 5.44425 5.47738 5.59856 5.62093 5.68350 5.80362 5.86112 5.92814 6.07036 6.12445 6.19797 6.30440 6.39552 6.41340 6.54186 6.66862 6.84770 6.85634 6.97491 7.06270 7.15924 7.39037 7.49805 7.58700 7.72284 8.03675 8.15310 8.41225 8.50727 8.90458 9.11591 9.56049 11.01695 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.003672 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.666502 B = 7622.866864 C = 8122.969665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.163 3.837 4 H 0.069 0.931 5 C -0.100 4.100 6 H 0.082 0.918 7 C -0.153 4.153 8 C -0.126 4.126 9 C 0.098 3.902 10 N -0.640 5.640 11 C 0.716 3.284 12 O -0.594 6.594 13 N -0.732 5.732 14 C 0.150 3.850 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 2.531 14.257 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.119 4.119 6 H 0.100 0.900 7 C -0.210 4.210 8 C -0.164 4.164 9 C -0.025 4.025 10 N -0.379 5.379 11 C 0.418 3.582 12 O -0.473 6.473 13 N -0.386 5.386 14 C 0.027 3.973 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.922 2.123 13.551 19.544 hybrid contribution 0.811 -0.017 -0.600 1.009 sum -13.112 2.106 12.951 18.549 Atomic orbital electron populations 1.22245 0.95686 1.01734 1.02706 1.21987 0.95795 0.96716 1.03289 1.21412 0.81341 0.96610 0.94758 0.91339 1.22236 0.95501 1.00151 0.94033 0.89996 1.22241 0.98519 1.01330 0.98883 1.22820 0.94231 1.02706 0.96630 1.22236 0.95698 0.98140 0.86470 1.47663 1.08019 1.65824 1.16402 1.15600 0.82781 0.79412 0.80418 1.90856 1.59564 1.48504 1.48411 1.45545 1.07275 1.62577 1.23217 1.21577 0.95851 0.97724 0.82115 1.18363 0.87570 0.93076 0.95481 1.21811 1.03672 0.97222 0.95942 1.21809 1.04066 0.98088 0.94657 1.20992 0.94100 1.37183 1.02029 0.92409 1.24877 0.96940 0.94959 0.96749 1.69804 1.05635 1.42335 1.34755 0.86569 0.78170 0.79266 0.83853 1.20731 1.21299 1.19891 0.93058 0.91053 0.92847 0.89761 0.91864 0.92742 0.91576 0.90937 0.90547 0.90039 0.90904 0.91702 0.77214 0.92999 0.93022 0.97648 0.89663 0.95478 0.95473 0.89652 0.97693 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.31 37.16 0.35 -1.32 16 2 C -0.14 -1.75 5.08 -26.73 -0.14 -1.88 16 3 C 0.16 2.03 2.93 -66.95 -0.20 1.83 16 4 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 5 C -0.10 -0.88 3.44 -88.78 -0.31 -1.18 16 6 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 7 C -0.15 -1.09 7.48 37.16 0.28 -0.81 16 8 C -0.13 -1.07 6.54 -24.58 -0.16 -1.24 16 9 C 0.10 1.10 6.47 -2.53 -0.02 1.09 16 10 N -0.64 -9.43 3.08 -168.68 -0.52 -9.95 16 11 C 0.72 13.67 8.26 -86.91 -0.72 12.95 16 12 O -0.59 -13.39 14.95 5.29 0.08 -13.31 16 13 N -0.73 -13.99 4.92 -65.23 -0.32 -14.31 16 14 C 0.15 3.34 4.50 -4.05 -0.02 3.32 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.42 8.01 -34.44 -0.28 -13.69 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.56 4.14 -51.93 -0.21 0.35 16 28 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 29 H 0.08 1.39 6.19 -51.93 -0.32 1.07 16 30 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.43 6.27 -51.93 -0.33 0.11 16 33 H 0.07 0.56 4.99 -51.93 -0.26 0.30 16 34 H 0.08 0.66 8.05 -51.92 -0.42 0.25 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 6.86 4.77 -40.82 -0.19 6.67 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 346.29 15.07 5.22 5.22 Total: -1.00 -29.31 346.29 -8.78 -38.10 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.97 Total: 4.97 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.77 Total: -3.34 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.32 Total: -47.53 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.31 -8.78 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.442 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds