Wall clock time and date at job start Tue Mar 31 2020 05:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46942 * 2 1 4 4 H 1.09001 * 109.99632 * 317.01483 * 3 2 1 5 5 C 1.54330 * 109.78156 * 78.17640 * 3 2 1 6 6 H 1.08997 * 110.52105 * 215.81140 * 5 3 2 7 7 C 1.53010 * 110.85044 * 339.03317 * 5 3 2 8 8 C 1.55157 * 103.01991 * 97.49657 * 5 3 2 9 9 C 1.54906 * 101.58263 * 35.30810 * 8 5 3 10 10 N 1.47014 * 109.88156 * 195.91873 * 3 2 1 11 11 C 1.34784 * 125.64832 * 59.56005 * 10 3 2 12 12 O 1.21586 * 119.99777 * 354.70445 * 11 10 3 13 13 N 1.34781 * 119.99930 * 174.70710 * 11 10 3 14 14 C 1.46493 * 119.99737 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47311 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47115 * 300.00426 * 15 14 13 17 17 C 1.53004 * 109.46960 * 59.99566 * 15 14 13 18 18 C 1.50697 * 109.47428 * 179.97438 * 15 14 13 19 19 H 1.07993 * 119.99986 * 0.02562 * 18 15 14 20 20 C 1.37881 * 119.99973 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00105 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00173 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47481 * 89.99688 * 22 20 18 24 24 H 1.48499 * 109.47326 * 210.00099 * 22 20 18 25 25 H 1.48500 * 109.47026 * 330.00073 * 22 20 18 26 26 H 1.08996 * 109.46992 * 170.13532 * 1 2 3 27 27 H 1.09003 * 109.47445 * 290.13382 * 1 2 3 28 28 H 1.09005 * 109.47369 * 50.13311 * 1 2 3 29 29 H 1.08994 * 109.47088 * 240.00341 * 2 1 3 30 30 H 1.08996 * 109.47336 * 119.99282 * 2 1 3 31 31 H 1.08997 * 109.47068 * 166.84824 * 7 5 3 32 32 H 1.09000 * 109.46927 * 286.84758 * 7 5 3 33 33 H 1.08994 * 109.46972 * 46.84601 * 7 5 3 34 34 H 1.09008 * 111.00304 * 277.23561 * 8 5 3 35 35 H 1.08994 * 111.04074 * 153.39792 * 8 5 3 36 36 H 1.08997 * 110.37302 * 204.15496 * 9 8 5 37 37 H 1.09000 * 110.46362 * 81.86990 * 9 8 5 38 38 H 0.96998 * 119.99996 * 359.97438 * 13 11 10 39 39 H 1.08996 * 109.47361 * 59.99839 * 14 13 11 40 40 H 1.09004 * 109.47452 * 300.00101 * 14 13 11 41 41 H 1.08998 * 109.47365 * 59.99355 * 16 15 14 42 42 H 1.09004 * 109.47285 * 179.97438 * 16 15 14 43 43 H 1.09006 * 109.46610 * 299.99580 * 16 15 14 44 44 H 1.09004 * 109.46639 * 60.00658 * 17 15 14 45 45 H 1.09004 * 109.47008 * 180.02562 * 17 15 14 46 46 H 1.08998 * 109.47256 * 300.00483 * 17 15 14 47 47 H 0.96992 * 120.00322 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4577 2.0438 -0.6984 5 6 1.9335 2.0342 1.4214 6 1 1.6697 3.0908 1.3767 7 6 0.9177 1.2562 2.2605 8 6 3.3672 1.8497 1.9851 9 6 4.2309 2.0801 0.7200 10 7 3.4601 1.4708 -0.3792 11 6 3.9719 1.0198 -1.5416 12 8 3.2542 0.4520 -2.3421 13 7 5.2792 1.1981 -1.8166 14 6 5.8355 0.7073 -3.0798 15 6 7.3287 1.0353 -3.1411 16 6 7.5222 2.5505 -3.0530 17 6 8.0474 0.3606 -1.9709 18 6 7.9012 0.5299 -4.4403 19 1 7.2637 0.0256 -5.1513 20 6 9.2388 0.7113 -4.7211 21 7 10.0151 1.3258 -3.8554 22 14 9.9483 0.0855 -6.3317 23 1 9.8426 1.1470 -7.3649 24 1 11.3756 -0.2753 -6.1370 25 1 9.1907 -1.1127 -6.7739 26 1 -0.3633 -1.0124 -0.1761 27 1 -0.3634 0.3537 0.9649 28 1 -0.3634 0.6588 -0.7888 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.0254 1.5322 3.3094 32 1 -0.0910 1.4953 1.9236 33 1 1.0950 0.1869 2.1461 34 1 3.5069 0.8414 2.3752 35 1 3.5864 2.5957 2.7490 36 1 5.1969 1.5864 0.8250 37 1 4.3681 3.1466 0.5413 38 1 5.8517 1.6514 -1.1781 39 1 5.3232 1.1876 -3.9134 40 1 5.6982 -0.3722 -3.1424 41 1 7.1082 2.9156 -2.1132 42 1 8.5860 2.7841 -3.0962 43 1 7.0101 3.0311 -3.8867 44 1 7.9097 -0.7188 -2.0337 45 1 9.1112 0.5946 -2.0143 46 1 7.6335 0.7258 -1.0311 47 1 10.9560 1.4537 -4.0531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459237147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:16 Heat of formation + Delta-G solvation = -47.013674 kcal Electronic energy + Delta-G solvation = -23640.991665 eV Core-core repulsion = 20437.118884 eV Total energy + Delta-G solvation = -3203.872781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59713 -39.55509 -37.98657 -35.45906 -34.61340 -33.07659 -32.48071 -29.33769 -28.17503 -27.58532 -27.35383 -26.18093 -23.91060 -23.49249 -21.32472 -20.62219 -20.09463 -19.22026 -17.82334 -17.30665 -16.88402 -16.66021 -16.41143 -15.54364 -15.33185 -14.95865 -14.80572 -14.46300 -14.38007 -14.10035 -14.01060 -13.75885 -13.21675 -13.10782 -13.09716 -12.72322 -12.62627 -12.61484 -12.56623 -12.43363 -12.26926 -12.14121 -12.11635 -11.74704 -11.50461 -11.33029 -11.25923 -11.15611 -10.80344 -10.71842 -10.40633 -10.08825 -9.41827 -8.02923 -6.18640 1.42508 1.44944 1.53414 1.69460 2.17380 2.45706 3.13297 3.20564 3.59925 3.66078 3.88507 4.13549 4.23282 4.34198 4.40379 4.48930 4.50594 4.58909 4.66353 4.68473 4.72466 4.82700 4.89617 4.94738 4.99465 5.03313 5.04867 5.08881 5.14595 5.17599 5.19323 5.26529 5.34331 5.36692 5.46633 5.49908 5.62061 5.65279 5.66354 5.70507 6.12777 6.13074 6.20280 6.42702 6.84941 7.05903 7.48922 7.62221 8.96305 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.003672 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.666502 B = 7622.866864 C = 8122.969665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C 0.152 3.848 4 H 0.053 0.947 5 C -0.089 4.089 6 H 0.096 0.904 7 C -0.151 4.151 8 C -0.116 4.116 9 C 0.087 3.913 10 N -0.637 5.637 11 C 0.709 3.291 12 O -0.637 6.637 13 N -0.725 5.725 14 C 0.168 3.832 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.899 5.899 22 Si 0.946 3.054 23 H -0.279 1.279 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.403 0.597 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.016 0.984 44 H 0.017 0.983 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 3.493 16.764 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.174 4.174 3 C 0.049 3.951 4 H 0.071 0.929 5 C -0.108 4.108 6 H 0.115 0.885 7 C -0.208 4.208 8 C -0.154 4.154 9 C -0.035 4.035 10 N -0.374 5.374 11 C 0.411 3.589 12 O -0.519 6.519 13 N -0.381 5.381 14 C 0.044 3.956 15 C 0.052 3.948 16 C -0.175 4.175 17 C -0.175 4.175 18 C -0.569 4.569 19 H 0.062 0.938 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.773 3.227 23 H -0.205 1.205 24 H -0.206 1.206 25 H -0.202 1.202 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.239 0.761 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.598 3.113 16.118 21.967 hybrid contribution 0.982 -0.305 -1.351 1.698 sum -13.615 2.809 14.767 20.281 Atomic orbital electron populations 1.22236 0.93747 1.01784 1.04023 1.21918 0.97519 0.96491 1.01435 1.21696 0.79764 0.96568 0.97080 0.92889 1.22242 0.96387 1.00906 0.91285 0.88544 1.22223 0.98274 1.00585 0.99696 1.22844 0.92994 1.03796 0.95716 1.22577 0.95941 0.98542 0.86490 1.47733 1.09595 1.64469 1.15607 1.15776 0.82313 0.79378 0.81414 1.90826 1.60419 1.50329 1.50323 1.45249 1.07687 1.62811 1.22357 1.21120 0.95007 0.96382 0.83099 1.18359 0.88145 0.93582 0.94757 1.21639 1.02252 0.96552 0.97044 1.21636 1.02690 0.97448 0.95681 1.21253 0.94564 1.37802 1.03240 0.93829 1.25446 0.97149 0.95156 0.99305 1.69898 1.05723 1.42435 1.35659 0.85740 0.77575 0.78601 0.80778 1.20453 1.20649 1.20164 0.93023 0.88162 0.93743 0.94490 0.90736 0.90707 0.90778 0.91597 0.90491 0.86997 0.90933 0.90409 0.76054 0.94863 0.94899 0.94812 0.91688 0.96447 0.96424 0.91690 0.94814 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.31 71.98 0.67 -2.39 16 2 C -0.14 -3.36 5.08 30.60 0.16 -3.21 16 3 C 0.15 3.64 2.93 45.35 0.13 3.77 16 4 H 0.05 1.42 7.91 -2.39 -0.02 1.40 16 5 C -0.09 -1.27 3.44 -9.60 -0.03 -1.30 16 6 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 7 C -0.15 -1.57 7.48 71.99 0.54 -1.03 16 8 C -0.12 -1.53 6.54 31.98 0.21 -1.32 16 9 C 0.09 1.73 6.47 86.85 0.56 2.29 16 10 N -0.64 -18.29 3.08 -805.86 -2.48 -20.77 16 11 C 0.71 27.51 8.26 179.05 1.48 28.99 16 12 O -0.64 -29.97 14.95 -3.99 -0.06 -30.03 16 13 N -0.73 -27.78 4.92 -478.54 -2.35 -30.13 16 14 C 0.17 7.69 4.50 86.38 0.39 8.08 16 15 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 16 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 17 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 18 C -0.53 -28.76 8.01 25.60 0.21 -28.56 16 19 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 20 C 0.03 1.56 5.15 84.66 0.44 2.00 16 21 N -0.90 -48.27 9.35 21.45 0.20 -48.07 16 22 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.32 4.14 -2.39 -0.01 1.31 16 28 H 0.04 0.92 7.96 -2.38 -0.02 0.90 16 29 H 0.04 1.28 6.19 -2.39 -0.01 1.26 16 30 H 0.07 1.64 6.34 -2.39 -0.02 1.62 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.67 6.27 -2.39 -0.01 0.66 16 33 H 0.07 0.80 4.99 -2.39 -0.01 0.79 16 34 H 0.08 1.05 8.05 -2.38 -0.02 1.04 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.46 7.50 -2.39 -0.02 1.44 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.40 13.56 4.77 -92.71 -0.44 13.12 16 39 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 42 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 43 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 46 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 47 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -65.54 346.29 3.72 -61.82 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.51 Total: 21.71 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 5.88 Total: 0.28 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -4.63 Total: -98.98 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.54 3.72 -61.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459237147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.805 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds