Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 H 1.09007 * 109.86990 * 53.16007 * 3 2 1 5 5 C 1.54329 * 109.88365 * 174.33078 * 3 2 1 6 6 C 1.55152 * 102.93976 * 97.22966 * 5 3 2 7 7 C 1.54903 * 101.58609 * 35.49911 * 6 5 3 8 8 H 1.09001 * 110.45810 * 81.87543 * 7 6 5 9 9 C 1.52996 * 110.37210 * 204.15408 * 7 6 5 10 10 N 1.47021 * 109.88359 * 292.14349 * 3 2 1 11 11 C 1.34773 * 125.64849 * 59.55642 * 10 3 2 12 12 O 1.21583 * 120.00427 * 6.95248 * 11 10 3 13 13 N 1.34776 * 119.99645 * 186.95461 * 11 10 3 14 14 C 1.46501 * 119.99826 * 175.52856 * 13 11 10 15 15 C 1.53001 * 109.47240 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47285 * 300.00436 * 15 14 13 17 17 C 1.53005 * 109.46820 * 60.00283 * 15 14 13 18 18 C 1.50701 * 109.47113 * 180.02562 * 15 14 13 19 19 H 1.07994 * 120.00337 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99836 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00094 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00075 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.46913 * 59.99917 * 22 20 18 24 24 H 1.48494 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47216 * 300.00164 * 22 20 18 26 26 H 1.09000 * 109.47451 * 84.20583 * 1 2 3 27 27 H 1.09001 * 109.47116 * 204.20052 * 1 2 3 28 28 H 1.08999 * 109.47481 * 324.20398 * 1 2 3 29 29 H 1.09004 * 109.47270 * 240.00366 * 2 1 3 30 30 H 1.09002 * 109.47382 * 119.99881 * 2 1 3 31 31 H 1.09001 * 110.71853 * 215.58979 * 5 3 2 32 32 H 1.09000 * 110.71942 * 338.86342 * 5 3 2 33 33 H 1.09006 * 110.99892 * 277.42337 * 6 5 3 34 34 H 1.09002 * 111.03661 * 153.59045 * 6 5 3 35 35 H 1.08996 * 109.47287 * 202.18612 * 9 7 6 36 36 H 1.09008 * 109.46885 * 322.18443 * 9 7 6 37 37 H 1.08994 * 109.47230 * 82.17877 * 9 7 6 38 38 H 0.96996 * 119.99948 * 355.53318 * 13 11 10 39 39 H 1.08999 * 109.47501 * 299.99977 * 14 13 11 40 40 H 1.09003 * 109.46803 * 59.99973 * 14 13 11 41 41 H 1.09003 * 109.47537 * 59.99880 * 16 15 14 42 42 H 1.08998 * 109.47622 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47459 * 299.99873 * 16 15 14 44 44 H 1.08995 * 109.46925 * 59.99904 * 17 15 14 45 45 H 1.09005 * 109.46780 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.47077 * 300.00088 * 17 15 14 47 47 H 0.96999 * 120.00309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5839 1.9967 0.8205 5 6 3.5765 1.4559 0.1434 6 6 4.0611 1.5998 -1.3235 7 6 2.9696 2.5212 -1.9228 8 1 3.1777 3.5640 -1.6832 9 6 2.8851 2.3307 -3.4385 10 7 1.7153 2.0877 -1.2806 11 6 0.4763 2.2556 -1.7837 12 8 -0.4964 1.9730 -1.1112 13 7 0.3156 2.7368 -3.0323 14 6 -1.0253 2.8274 -3.6154 15 6 -0.9286 3.4027 -5.0299 16 6 -0.3025 4.7974 -4.9715 17 6 -0.0575 2.4884 -5.8938 18 6 -2.3080 3.4965 -5.6294 19 1 -3.1677 3.1781 -5.0586 20 6 -2.4725 3.9888 -6.9067 21 7 -1.4256 4.3770 -7.6017 22 14 -4.1822 4.1044 -7.6502 23 1 -5.0275 4.9922 -6.8119 24 1 -4.0882 4.6617 -9.0234 25 1 -4.7901 2.7507 -7.7065 26 1 -0.3634 0.1037 -1.0224 27 1 -0.3633 -0.9374 0.4213 28 1 -0.3634 0.8335 0.6011 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9005 2.3074 0.7418 32 1 3.9315 0.5210 0.5770 33 1 4.0756 0.6329 -1.8267 34 1 5.0409 2.0753 -1.3671 35 1 2.4332 3.2134 -3.8910 36 1 3.8872 2.1877 -3.8431 37 1 2.2750 1.4554 -3.6613 38 1 1.0877 3.0230 -3.5449 39 1 -1.4715 1.8338 -3.6567 40 1 -1.6457 3.4791 -3.0001 41 1 0.6952 4.7300 -4.5377 42 1 -0.2340 5.2075 -5.9791 43 1 -0.9230 5.4488 -4.3560 44 1 -0.5036 1.4947 -5.9353 45 1 0.0110 2.8980 -6.9016 46 1 0.9401 2.4209 -5.4599 47 1 -1.5412 4.7230 -8.5005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = -17.309333 kcal Electronic energy + Delta-G solvation = -24339.075546 eV Core-core repulsion = 21136.490842 eV Total energy + Delta-G solvation = -3202.584704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52828 -37.76870 -36.32160 -34.38886 -32.58535 -31.54099 -30.35193 -30.19257 -25.94193 -25.68964 -25.52722 -24.85393 -22.57754 -22.06626 -20.76665 -19.34154 -18.66420 -17.64305 -15.96343 -15.86832 -15.50565 -14.85545 -14.65787 -14.26867 -14.07951 -13.72315 -13.33281 -13.15909 -12.93744 -12.80863 -12.63354 -12.28611 -12.13632 -11.92294 -11.74752 -11.34286 -11.33405 -11.14001 -10.91828 -10.79828 -10.75663 -10.69417 -10.56300 -10.42838 -10.26255 -10.14938 -9.58676 -9.36592 -9.21943 -8.76250 -8.38239 -8.32332 -7.97927 -5.99097 -4.08760 3.02027 3.32290 3.36248 3.40475 3.71934 4.31390 4.42852 4.44332 4.68822 4.82511 4.92083 5.16418 5.22363 5.27558 5.33409 5.37151 5.46788 5.55195 5.64018 5.76322 5.79917 5.92364 5.99346 6.12506 6.17650 6.26696 6.30574 6.42605 6.50829 6.56491 6.64455 6.84453 6.84812 6.94596 7.00415 7.06923 7.24018 7.41851 7.57803 7.58747 7.72669 8.04084 8.15831 8.42389 8.57727 8.91042 9.19947 9.56704 11.02341 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.004472 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.103924 B = 6259.353853 C = 6876.710211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.156 3.844 4 H 0.070 0.930 5 C -0.130 4.130 6 C -0.126 4.126 7 C 0.127 3.873 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.635 5.635 11 C 0.710 3.290 12 O -0.584 6.584 13 N -0.743 5.743 14 C 0.147 3.853 15 C 0.057 3.943 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.398 0.602 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.002 0.998 42 H 0.085 0.915 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 -4.953 11.058 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.088 0.912 5 C -0.168 4.168 6 C -0.164 4.164 7 C 0.023 3.977 8 H 0.090 0.910 9 C -0.235 4.235 10 N -0.375 5.375 11 C 0.412 3.588 12 O -0.463 6.463 13 N -0.405 5.405 14 C 0.024 3.976 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.188 4.188 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.091 0.909 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.243 0.757 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.021 0.979 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.024 0.976 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.524 -5.056 11.280 17.597 hybrid contribution -0.555 0.248 -0.705 0.931 sum 11.969 -4.808 10.575 16.679 Atomic orbital electron populations 1.22097 0.93763 0.99573 1.04255 1.21954 0.98040 0.95516 1.01211 1.21434 0.94089 0.93362 0.85900 0.91155 1.22710 0.94223 1.02758 0.97087 1.22805 0.97796 1.00241 0.95578 1.21898 0.84534 0.98194 0.93069 0.90955 1.22471 1.03220 1.03118 0.94663 1.47766 1.04127 1.63522 1.22112 1.15602 0.81828 0.79046 0.82316 1.90916 1.38110 1.57443 1.59840 1.46426 1.12283 1.67594 1.14222 1.21548 0.80660 0.99926 0.95445 1.18344 0.95897 0.91913 0.88267 1.21822 0.95146 0.98951 1.02757 1.21846 0.95038 0.98451 1.03473 1.20950 0.91696 1.42218 0.99399 0.92487 1.24872 0.96702 0.95019 0.96895 1.69793 1.28598 1.43090 1.11078 0.86637 0.84715 0.78414 0.78100 1.20293 1.21366 1.20304 0.90944 0.95498 0.91535 0.92324 0.91979 0.90714 0.90059 0.90470 0.90085 0.91126 0.90766 0.90733 0.75748 0.93247 0.93150 0.97879 0.89627 0.95425 0.95493 0.89676 0.97579 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.07 37.15 0.30 -1.87 16 2 C -0.13 -1.60 5.45 -26.74 -0.15 -1.75 16 3 C 0.16 1.92 3.05 -66.95 -0.20 1.72 16 4 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 5 C -0.13 -1.11 6.49 -24.90 -0.16 -1.27 16 6 C -0.13 -1.07 6.41 -24.59 -0.16 -1.23 16 7 C 0.13 1.46 3.77 -66.42 -0.25 1.21 16 8 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 9 C -0.18 -2.11 7.44 37.16 0.28 -1.83 16 10 N -0.63 -9.28 2.97 -161.23 -0.48 -9.76 16 11 C 0.71 13.28 7.46 -86.92 -0.65 12.63 16 12 O -0.58 -12.48 11.54 5.29 0.06 -12.42 16 13 N -0.74 -14.17 4.34 -65.22 -0.28 -14.45 16 14 C 0.15 3.27 4.51 -4.04 -0.02 3.26 16 15 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 16 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 17 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 18 C -0.50 -13.38 8.01 -34.44 -0.28 -13.65 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.07 1.35 5.90 -51.93 -0.31 1.05 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.58 7.77 -51.93 -0.40 0.17 16 33 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.95 5.86 -51.93 -0.30 0.64 16 36 H 0.07 0.70 7.99 -51.92 -0.41 0.28 16 37 H 0.07 1.03 7.44 -51.93 -0.39 0.65 16 38 H 0.40 6.96 1.40 -40.82 -0.06 6.90 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.00 0.05 6.85 -51.93 -0.36 -0.31 16 42 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.01 0.11 6.32 -51.93 -0.33 -0.22 16 47 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -28.58 343.28 -9.02 -37.60 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.13 Total: 6.41 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.86 Total: -5.22 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.24 Total: -47.41 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.06 Total: -12.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.58 -9.02 -37.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.291 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds