Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 H 1.09007 * 109.86990 * 53.16007 * 3 2 1 5 5 C 1.54329 * 109.88365 * 174.33078 * 3 2 1 6 6 C 1.55152 * 102.93976 * 97.22966 * 5 3 2 7 7 C 1.54903 * 101.58609 * 35.49911 * 6 5 3 8 8 H 1.09001 * 110.45810 * 81.87543 * 7 6 5 9 9 C 1.52996 * 110.37210 * 204.15408 * 7 6 5 10 10 N 1.47021 * 109.88359 * 292.14349 * 3 2 1 11 11 C 1.34773 * 125.64849 * 59.55642 * 10 3 2 12 12 O 1.21583 * 120.00427 * 6.95248 * 11 10 3 13 13 N 1.34776 * 119.99645 * 186.95461 * 11 10 3 14 14 C 1.46501 * 119.99826 * 175.52856 * 13 11 10 15 15 C 1.53001 * 109.47240 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47285 * 300.00436 * 15 14 13 17 17 C 1.53005 * 109.46820 * 60.00283 * 15 14 13 18 18 C 1.50701 * 109.47113 * 180.02562 * 15 14 13 19 19 H 1.07994 * 120.00337 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99836 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00094 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 120.00075 * 179.97438 * 20 18 15 23 23 H 1.48509 * 109.46913 * 59.99917 * 22 20 18 24 24 H 1.48494 * 109.47295 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47216 * 300.00164 * 22 20 18 26 26 H 1.09000 * 109.47451 * 84.20583 * 1 2 3 27 27 H 1.09001 * 109.47116 * 204.20052 * 1 2 3 28 28 H 1.08999 * 109.47481 * 324.20398 * 1 2 3 29 29 H 1.09004 * 109.47270 * 240.00366 * 2 1 3 30 30 H 1.09002 * 109.47382 * 119.99881 * 2 1 3 31 31 H 1.09001 * 110.71853 * 215.58979 * 5 3 2 32 32 H 1.09000 * 110.71942 * 338.86342 * 5 3 2 33 33 H 1.09006 * 110.99892 * 277.42337 * 6 5 3 34 34 H 1.09002 * 111.03661 * 153.59045 * 6 5 3 35 35 H 1.08996 * 109.47287 * 202.18612 * 9 7 6 36 36 H 1.09008 * 109.46885 * 322.18443 * 9 7 6 37 37 H 1.08994 * 109.47230 * 82.17877 * 9 7 6 38 38 H 0.96996 * 119.99948 * 355.53318 * 13 11 10 39 39 H 1.08999 * 109.47501 * 299.99977 * 14 13 11 40 40 H 1.09003 * 109.46803 * 59.99973 * 14 13 11 41 41 H 1.09003 * 109.47537 * 59.99880 * 16 15 14 42 42 H 1.08998 * 109.47622 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47459 * 299.99873 * 16 15 14 44 44 H 1.08995 * 109.46925 * 59.99904 * 17 15 14 45 45 H 1.09005 * 109.46780 * 179.97438 * 17 15 14 46 46 H 1.08999 * 109.47077 * 300.00088 * 17 15 14 47 47 H 0.96999 * 120.00309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5839 1.9967 0.8205 5 6 3.5765 1.4559 0.1434 6 6 4.0611 1.5998 -1.3235 7 6 2.9696 2.5212 -1.9228 8 1 3.1777 3.5640 -1.6832 9 6 2.8851 2.3307 -3.4385 10 7 1.7153 2.0877 -1.2806 11 6 0.4763 2.2556 -1.7837 12 8 -0.4964 1.9730 -1.1112 13 7 0.3156 2.7368 -3.0323 14 6 -1.0253 2.8274 -3.6154 15 6 -0.9286 3.4027 -5.0299 16 6 -0.3025 4.7974 -4.9715 17 6 -0.0575 2.4884 -5.8938 18 6 -2.3080 3.4965 -5.6294 19 1 -3.1677 3.1781 -5.0586 20 6 -2.4725 3.9888 -6.9067 21 7 -1.4256 4.3770 -7.6017 22 14 -4.1822 4.1044 -7.6502 23 1 -5.0275 4.9922 -6.8119 24 1 -4.0882 4.6617 -9.0234 25 1 -4.7901 2.7507 -7.7065 26 1 -0.3634 0.1037 -1.0224 27 1 -0.3633 -0.9374 0.4213 28 1 -0.3634 0.8335 0.6011 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9005 2.3074 0.7418 32 1 3.9315 0.5210 0.5770 33 1 4.0756 0.6329 -1.8267 34 1 5.0409 2.0753 -1.3671 35 1 2.4332 3.2134 -3.8910 36 1 3.8872 2.1877 -3.8431 37 1 2.2750 1.4554 -3.6613 38 1 1.0877 3.0230 -3.5449 39 1 -1.4715 1.8338 -3.6567 40 1 -1.6457 3.4791 -3.0001 41 1 0.6952 4.7300 -4.5377 42 1 -0.2340 5.2075 -5.9791 43 1 -0.9230 5.4488 -4.3560 44 1 -0.5036 1.4947 -5.9353 45 1 0.0110 2.8980 -6.9016 46 1 0.9401 2.4209 -5.4599 47 1 -1.5412 4.7230 -8.5005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459252839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = -32.502829 kcal Electronic energy + Delta-G solvation = -24339.734386 eV Core-core repulsion = 21136.490842 eV Total energy + Delta-G solvation = -3203.243544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75773 -39.12224 -37.98430 -35.76812 -34.12357 -32.87635 -31.87553 -31.23772 -27.60992 -27.52241 -26.77056 -26.68821 -23.59439 -23.28648 -21.72664 -20.67742 -20.47101 -18.86492 -17.80617 -17.16330 -16.86736 -16.67568 -15.92104 -15.70265 -15.38397 -14.81167 -14.74894 -14.56831 -14.26146 -14.11020 -14.02003 -13.77043 -13.27032 -13.15110 -13.07246 -12.91997 -12.77345 -12.62112 -12.54574 -12.44250 -12.27770 -12.14013 -11.81870 -11.67464 -11.51151 -11.48318 -11.31256 -11.18420 -10.81723 -10.70985 -10.39435 -9.80244 -9.33451 -8.02422 -6.18155 1.44266 1.44844 1.51868 1.77756 2.27272 2.45906 3.19166 3.20884 3.64680 3.71018 3.96573 3.99547 4.24852 4.26698 4.39822 4.43605 4.46604 4.51838 4.58970 4.67894 4.70356 4.84856 4.93156 4.97309 5.00395 5.01276 5.03945 5.06774 5.15416 5.16689 5.17127 5.25366 5.34406 5.37664 5.40640 5.58696 5.62194 5.64120 5.66226 5.77255 6.11954 6.19321 6.25939 6.43026 6.85028 7.15002 7.49301 7.74502 8.96691 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.004472 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.103924 B = 6259.353853 C = 6876.710211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.117 4.117 6 C -0.116 4.116 7 C 0.117 3.883 8 H 0.082 0.918 9 C -0.175 4.175 10 N -0.633 5.633 11 C 0.702 3.298 12 O -0.619 6.619 13 N -0.739 5.739 14 C 0.166 3.834 15 C 0.053 3.947 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.530 4.530 19 H 0.043 0.957 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.406 0.594 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.089 -5.394 11.833 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.042 3.958 4 H 0.075 0.925 5 C -0.155 4.155 6 C -0.153 4.153 7 C 0.014 3.986 8 H 0.099 0.901 9 C -0.233 4.233 10 N -0.372 5.372 11 C 0.404 3.596 12 O -0.500 6.500 13 N -0.404 5.404 14 C 0.041 3.959 15 C 0.052 3.948 16 C -0.175 4.175 17 C -0.176 4.176 18 C -0.568 4.568 19 H 0.061 0.939 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.773 3.227 23 H -0.203 1.203 24 H -0.206 1.206 25 H -0.203 1.203 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.368 -5.497 12.064 20.296 hybrid contribution -1.412 0.372 -0.898 1.714 sum 13.956 -5.125 11.167 18.594 Atomic orbital electron populations 1.21932 0.96508 0.99222 1.01337 1.21932 0.95360 0.96156 1.02656 1.21720 0.97186 0.92659 0.84275 0.92481 1.22714 0.90451 1.04766 0.97547 1.22823 0.97812 0.99775 0.94925 1.22232 0.83989 0.99625 0.92720 0.90051 1.22439 1.04492 1.01143 0.95221 1.47852 1.03669 1.62659 1.23015 1.15804 0.83013 0.78857 0.81925 1.90903 1.39904 1.58663 1.60551 1.46250 1.11132 1.68216 1.14774 1.21081 0.82118 0.98139 0.94585 1.18342 0.95007 0.92592 0.88870 1.21653 0.96331 0.98072 1.01469 1.21666 0.96293 0.97363 1.02232 1.21211 0.92711 1.42908 0.99998 0.93876 1.25444 0.99674 0.94754 0.97136 1.69890 1.29723 1.42960 1.11129 0.85805 0.81185 0.78198 0.77538 1.20333 1.20586 1.20291 0.94763 0.94245 0.93723 0.92369 0.88798 0.89172 0.87698 0.90258 0.86985 0.92811 0.87576 0.92895 0.74736 0.95111 0.95238 0.95273 0.91545 0.96439 0.96449 0.91671 0.94812 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.07 71.98 0.58 -3.61 16 2 C -0.12 -2.84 5.45 30.59 0.17 -2.67 16 3 C 0.15 3.28 3.05 45.34 0.14 3.42 16 4 H 0.06 1.45 7.98 -2.38 -0.02 1.43 16 5 C -0.12 -1.48 6.49 31.78 0.21 -1.28 16 6 C -0.12 -1.44 6.41 31.98 0.20 -1.24 16 7 C 0.12 2.37 3.77 45.46 0.17 2.54 16 8 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 9 C -0.18 -3.79 7.44 71.98 0.54 -3.25 16 10 N -0.63 -17.85 2.97 -782.28 -2.33 -20.18 16 11 C 0.70 26.79 7.46 179.06 1.34 28.12 16 12 O -0.62 -27.69 11.54 -3.98 -0.05 -27.74 16 13 N -0.74 -28.70 4.34 -478.54 -2.08 -30.78 16 14 C 0.17 7.65 4.51 86.38 0.39 8.04 16 15 C 0.05 2.55 0.50 -52.93 -0.03 2.52 16 16 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 17 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 18 C -0.53 -28.89 8.01 25.60 0.21 -28.68 16 19 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 20 C 0.03 1.59 5.15 84.66 0.44 2.03 16 21 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 22 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H 0.03 1.33 5.90 -2.39 -0.01 1.32 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.58 6.64 -2.39 -0.02 1.56 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.92 7.77 -2.39 -0.02 0.90 16 33 H 0.08 1.01 8.06 -2.38 -0.02 0.99 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.35 5.86 -2.39 -0.01 1.33 16 36 H 0.11 1.61 7.99 -2.38 -0.02 1.59 16 37 H 0.05 1.39 7.44 -2.39 -0.02 1.37 16 38 H 0.41 14.07 1.40 -92.71 -0.13 13.94 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.03 1.16 6.85 -2.39 -0.02 1.14 16 42 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 43 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 46 H 0.03 1.32 6.32 -2.39 -0.02 1.30 16 47 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 Total: -1.00 -64.72 343.28 4.09 -60.63 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.81 Total: 24.73 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.51 Total: -3.78 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.20 Total: -99.11 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.72 4.09 -60.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.130 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds