Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 H 1.08994 * 110.41632 * 331.67560 * 3 2 1 5 5 C 1.54908 * 110.36754 * 209.38148 * 3 2 1 6 6 C 1.55159 * 101.58594 * 204.15188 * 5 3 2 7 7 C 1.54323 * 102.93732 * 35.50129 * 6 5 3 8 8 H 1.09006 * 109.87939 * 218.23278 * 7 6 5 9 9 C 1.52997 * 109.88321 * 97.22744 * 7 6 5 10 10 N 1.47017 * 107.27364 * 337.80596 * 7 6 5 11 11 C 1.34783 * 125.64721 * 178.97779 * 10 7 6 12 12 O 1.21588 * 119.99655 * 186.41424 * 11 10 7 13 13 N 1.34776 * 119.99985 * 6.41244 * 11 10 7 14 14 C 1.46497 * 119.99951 * 175.18892 * 13 11 10 15 15 C 1.52995 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47214 * 299.99685 * 15 14 13 17 17 C 1.52996 * 109.47305 * 59.99956 * 15 14 13 18 18 C 1.50705 * 109.47106 * 179.97438 * 15 14 13 19 19 H 1.07998 * 119.99954 * 4.13419 * 18 15 14 20 20 C 1.37876 * 119.99849 * 184.12631 * 18 15 14 21 21 N 1.31510 * 120.00280 * 4.68522 * 20 18 15 22 22 Si 1.86809 * 119.99833 * 184.67829 * 20 18 15 23 23 H 1.48496 * 109.46742 * 95.00519 * 22 20 18 24 24 H 1.48502 * 109.47004 * 215.00393 * 22 20 18 25 25 H 1.48494 * 109.47111 * 335.00235 * 22 20 18 26 26 H 1.09001 * 109.46998 * 183.35734 * 1 2 3 27 27 H 1.09008 * 109.47158 * 303.35260 * 1 2 3 28 28 H 1.09001 * 109.47586 * 63.35020 * 1 2 3 29 29 H 1.08996 * 109.47145 * 240.00247 * 2 1 3 30 30 H 1.09004 * 109.47389 * 119.99354 * 2 1 3 31 31 H 1.09004 * 111.00570 * 322.22511 * 5 3 2 32 32 H 1.08997 * 111.00590 * 86.07504 * 5 3 2 33 33 H 1.09001 * 110.72134 * 153.86596 * 6 5 3 34 34 H 1.09000 * 110.72077 * 276.96242 * 6 5 3 35 35 H 1.09013 * 109.47021 * 66.31617 * 9 7 6 36 36 H 1.08999 * 109.47575 * 186.30935 * 9 7 6 37 37 H 1.08992 * 109.47143 * 306.31533 * 9 7 6 38 38 H 0.97001 * 120.00220 * 355.18378 * 13 11 10 39 39 H 1.09006 * 109.47047 * 300.00108 * 14 13 11 40 40 H 1.09004 * 109.47429 * 59.99733 * 14 13 11 41 41 H 1.09001 * 109.46857 * 64.99896 * 16 15 14 42 42 H 1.09002 * 109.46855 * 184.99578 * 16 15 14 43 43 H 1.08999 * 109.46711 * 304.99975 * 16 15 14 44 44 H 1.09001 * 109.47589 * 59.99657 * 17 15 14 45 45 H 1.08998 * 109.47666 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.46875 * 299.99690 * 17 15 14 47 47 H 0.97000 * 120.00340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3188 2.1007 -0.4847 5 6 3.4127 1.5291 -0.7125 6 6 4.0133 2.8108 -0.0771 7 6 3.4957 2.7515 1.3756 8 1 3.2368 3.7534 1.7180 9 6 4.5689 2.1517 2.2862 10 7 2.3012 1.8944 1.3787 11 6 1.5663 1.5753 2.4625 12 8 0.6655 0.7639 2.3688 13 7 1.8298 2.1555 3.6501 14 6 0.9662 1.8893 4.8031 15 6 1.4826 2.6644 6.0169 16 6 2.9111 2.2193 6.3363 17 6 1.4724 4.1627 5.7072 18 6 0.5937 2.3910 7.2028 19 1 -0.2144 1.6795 7.1193 20 6 0.8124 3.0492 8.3944 21 7 1.7364 3.9819 8.4706 22 14 -0.2041 2.6163 9.9008 23 1 0.5298 1.6220 10.7240 24 1 -0.4459 3.8419 10.7037 25 1 -1.5042 2.0411 9.4720 26 1 -0.3633 -1.0259 0.0602 27 1 -0.3634 0.5650 0.8585 28 1 -0.3634 0.4609 -0.9185 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 4.0259 0.6567 -0.4864 32 1 3.2875 1.6483 -1.7887 33 1 5.1026 2.7786 -0.1000 34 1 3.6444 3.7021 -0.5847 35 1 5.4222 2.8283 2.3367 36 1 4.1589 2.0090 3.2860 37 1 4.8904 1.1908 1.8848 38 1 2.5914 2.7492 3.7415 39 1 -0.0517 2.2059 4.5754 40 1 0.9737 0.8219 5.0240 41 1 3.5707 2.4976 5.5144 42 1 3.2469 2.7054 7.2523 43 1 2.9333 1.1377 6.4697 44 1 0.4547 4.4799 5.4797 45 1 1.8399 4.7150 6.5721 46 1 2.1151 4.3607 4.8494 47 1 1.8901 4.4452 9.3088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = -36.487166 kcal Electronic energy + Delta-G solvation = -24102.868582 eV Core-core repulsion = 20899.452265 eV Total energy + Delta-G solvation = -3203.416317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41127 -37.80029 -36.24596 -34.25871 -32.71854 -31.57658 -30.35387 -30.01357 -25.89002 -25.69920 -25.58043 -24.84760 -22.68768 -21.99225 -20.71131 -19.35583 -18.74381 -17.57163 -16.12784 -15.74179 -15.12733 -14.96874 -14.67243 -14.33631 -13.95327 -13.64263 -13.41571 -13.25470 -12.93392 -12.85417 -12.55561 -12.45102 -12.21420 -12.06604 -11.73027 -11.42545 -11.23012 -11.13313 -10.98272 -10.79464 -10.74382 -10.69119 -10.51032 -10.42584 -10.30859 -10.12676 -9.59742 -9.37838 -9.23075 -8.76447 -8.54143 -8.37961 -8.03005 -5.98243 -4.09984 3.01036 3.29574 3.36949 3.41468 3.67521 4.28780 4.42600 4.43438 4.73980 4.74938 4.96605 5.20778 5.23496 5.26136 5.38307 5.45814 5.49371 5.59305 5.63454 5.80676 5.83279 5.90310 6.03216 6.12365 6.20691 6.22225 6.27026 6.39136 6.42549 6.54701 6.68045 6.77444 6.85295 6.90132 6.98817 7.06227 7.25174 7.41277 7.53539 7.57515 7.71789 8.00050 8.20950 8.43827 8.53586 8.90536 9.17888 9.56118 11.00800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004359 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.057665 B = 6421.990432 C = 7130.839645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.155 3.845 4 H 0.069 0.931 5 C -0.130 4.130 6 C -0.125 4.125 7 C 0.126 3.874 8 H 0.072 0.928 9 C -0.171 4.171 10 N -0.635 5.635 11 C 0.715 3.285 12 O -0.585 6.585 13 N -0.733 5.733 14 C 0.150 3.850 15 C 0.055 3.945 16 C -0.125 4.125 17 C -0.135 4.135 18 C -0.503 4.503 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.008 0.992 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.024 0.976 45 H 0.099 0.901 46 H 0.000 1.000 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 -1.384 -16.725 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.051 3.949 4 H 0.087 0.913 5 C -0.168 4.168 6 C -0.163 4.163 7 C 0.021 3.979 8 H 0.090 0.910 9 C -0.230 4.230 10 N -0.375 5.375 11 C 0.418 3.582 12 O -0.465 6.465 13 N -0.389 5.389 14 C 0.027 3.973 15 C 0.055 3.945 16 C -0.182 4.182 17 C -0.192 4.192 18 C -0.542 4.542 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.230 0.770 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.117 0.883 46 H 0.019 0.981 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.865 -1.857 -16.534 17.642 hybrid contribution -0.077 0.128 0.894 0.906 sum 5.787 -1.729 -15.640 16.766 Atomic orbital electron populations 1.22061 0.95126 1.01820 1.02347 1.21633 0.97369 0.94851 1.01434 1.21810 0.95895 0.96057 0.81100 0.91342 1.22872 0.96073 0.98205 0.99667 1.22633 1.01062 0.98463 0.94168 1.21537 0.85800 0.94189 0.96327 0.91036 1.22334 0.98630 1.01537 1.00461 1.47816 1.29519 1.53473 1.06742 1.15641 0.81475 0.81369 0.79761 1.90780 1.34488 1.37344 1.83854 1.45732 1.33406 1.50560 1.09216 1.21574 0.92280 0.99631 0.83812 1.18367 0.93419 0.92009 0.90746 1.21764 0.97190 0.98857 1.00423 1.21941 0.98047 0.99318 0.99927 1.20999 1.14465 1.23783 0.94946 0.92405 1.24876 0.95330 0.94594 0.98693 1.69776 1.33123 1.23810 1.25729 0.86562 0.80611 0.77846 0.82894 1.20779 1.21312 1.19862 0.93864 0.88669 0.94750 0.92657 0.90995 0.90619 0.90140 0.90069 0.90659 0.91404 0.91512 0.92123 0.77042 0.93084 0.93030 0.97345 0.90772 0.95445 0.95648 0.88299 0.98087 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.19 37.15 0.34 -1.91 16 2 C -0.11 -1.52 5.08 -26.73 -0.14 -1.65 16 3 C 0.16 1.90 3.29 -66.42 -0.22 1.68 16 4 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 5 C -0.13 -1.15 6.35 -24.58 -0.16 -1.30 16 6 C -0.13 -1.06 6.49 -24.90 -0.16 -1.22 16 7 C 0.13 1.44 3.06 -66.96 -0.20 1.24 16 8 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 9 C -0.17 -1.94 8.99 37.16 0.33 -1.60 16 10 N -0.64 -9.18 2.97 -161.24 -0.48 -9.66 16 11 C 0.71 13.16 7.84 -86.91 -0.68 12.48 16 12 O -0.59 -12.28 11.51 5.29 0.06 -12.22 16 13 N -0.73 -13.78 4.46 -65.22 -0.29 -14.07 16 14 C 0.15 3.28 4.51 -4.05 -0.02 3.27 16 15 C 0.06 1.30 0.51 -155.66 -0.08 1.22 16 16 C -0.12 -2.81 8.10 37.16 0.30 -2.51 16 17 C -0.13 -3.12 8.02 37.16 0.30 -2.82 16 18 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 20 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 21 N -0.89 -23.66 9.41 55.43 0.52 -23.14 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.69 5.19 -51.92 -0.27 1.42 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.60 7.89 -51.93 -0.41 0.19 16 30 H 0.07 1.14 7.05 -51.93 -0.37 0.78 16 31 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 7.83 -51.93 -0.41 0.16 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.07 0.92 5.68 -51.93 -0.30 0.62 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.39 6.87 3.55 -40.82 -0.15 6.73 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.15 6.84 -51.93 -0.36 -0.20 16 42 H 0.07 1.84 6.49 -51.93 -0.34 1.50 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 2.52 5.60 -51.93 -0.29 2.23 16 46 H 0.00 0.00 6.86 -51.93 -0.36 -0.35 16 47 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -28.10 348.25 -8.96 -37.05 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.25 Total: 6.02 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.75 Total: -5.04 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.25 Total: -46.87 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.06 Total: -12.22 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.10 -8.96 -37.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.566 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds