Wall clock time and date at job start Tue Mar 31 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47296 * 2 1 4 4 H 1.09001 * 109.87517 * 51.73383 * 3 2 1 5 5 C 1.54323 * 110.01198 * 172.83203 * 3 2 1 6 6 C 1.55156 * 102.94180 * 141.68359 * 5 3 2 7 7 C 1.55130 * 101.48979 * 324.33052 * 6 5 3 8 8 H 1.08999 * 110.50083 * 278.46108 * 7 6 5 9 9 C 1.52991 * 110.34633 * 156.05986 * 7 6 5 10 10 N 1.47023 * 109.88296 * 290.71882 * 3 2 1 11 11 C 1.34771 * 125.65063 * 61.44993 * 10 3 2 12 12 O 1.21591 * 120.00374 * 192.59984 * 11 10 3 13 13 N 1.34778 * 120.00016 * 12.59456 * 11 10 3 14 14 C 1.46504 * 120.00123 * 185.74506 * 13 11 10 15 15 C 1.53003 * 109.46914 * 188.45292 * 14 13 11 16 16 C 1.52998 * 109.46883 * 53.92605 * 15 14 13 17 17 C 1.52998 * 109.47439 * 293.92685 * 15 14 13 18 18 C 1.50704 * 109.46823 * 173.92411 * 15 14 13 19 19 H 1.07998 * 119.99690 * 4.24622 * 18 15 14 20 20 C 1.37878 * 119.99726 * 183.96152 * 18 15 14 21 21 N 1.31508 * 120.00206 * 354.72718 * 20 18 15 22 22 Si 1.86805 * 119.99545 * 174.71705 * 20 18 15 23 23 H 1.48492 * 109.46788 * 95.00389 * 22 20 18 24 24 H 1.48504 * 109.46731 * 214.99959 * 22 20 18 25 25 H 1.48497 * 109.47434 * 335.00284 * 22 20 18 26 26 H 1.08997 * 109.46986 * 191.09619 * 1 2 3 27 27 H 1.08995 * 109.46985 * 311.09524 * 1 2 3 28 28 H 1.08996 * 109.47070 * 71.09481 * 1 2 3 29 29 H 1.08999 * 109.47062 * 240.00006 * 2 1 3 30 30 H 1.09003 * 109.47341 * 120.00126 * 2 1 3 31 31 H 1.08995 * 110.72054 * 260.04665 * 5 3 2 32 32 H 1.08998 * 110.72212 * 23.14175 * 5 3 2 33 33 H 1.08997 * 111.00860 * 82.57526 * 6 5 3 34 34 H 1.09000 * 111.00258 * 206.38761 * 6 5 3 35 35 H 1.09002 * 109.47374 * 308.48080 * 9 7 6 36 36 H 1.09000 * 109.47340 * 68.48166 * 9 7 6 37 37 H 1.09002 * 109.47332 * 188.48715 * 9 7 6 38 38 H 0.97003 * 119.99550 * 5.74984 * 13 11 10 39 39 H 1.09003 * 109.46559 * 68.46110 * 14 13 11 40 40 H 1.08992 * 109.46896 * 308.45773 * 14 13 11 41 41 H 1.09000 * 109.47352 * 179.97438 * 16 15 14 42 42 H 1.08995 * 109.47490 * 300.00113 * 16 15 14 43 43 H 1.09011 * 109.46900 * 60.00209 * 16 15 14 44 44 H 1.08999 * 109.46833 * 307.97329 * 17 15 14 45 45 H 1.08999 * 109.47134 * 67.96836 * 17 15 14 46 46 H 1.08999 * 109.46935 * 187.97225 * 17 15 14 47 47 H 0.97002 * 120.00197 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5651 2.0034 0.8048 5 6 3.5726 1.4607 0.1809 6 6 4.0197 2.6112 -0.7592 7 6 3.0178 2.4577 -1.9336 8 1 3.3476 1.6751 -2.6169 9 6 2.8630 3.7855 -2.6777 10 7 1.7456 2.0769 -1.2932 11 6 0.5165 2.2728 -1.8103 12 8 0.3916 2.5948 -2.9761 13 7 -0.5742 2.1117 -1.0351 14 6 -1.9121 2.2007 -1.6255 15 6 -2.9621 2.1931 -0.5126 16 6 -2.6432 3.2978 0.4968 17 6 -2.9464 0.8363 0.1943 18 6 -4.3258 2.4342 -1.1071 19 1 -4.4422 2.5099 -2.1781 20 6 -5.4256 2.5521 -0.2839 21 7 -5.3030 2.3516 1.0100 22 14 -7.0896 2.9970 -1.0067 23 1 -7.8625 1.7567 -1.2700 24 1 -7.8345 3.8498 -0.0459 25 1 -6.8948 3.7382 -2.2787 26 1 -0.3633 -1.0084 0.1978 27 1 -0.3633 0.6755 0.7744 28 1 -0.3633 0.3330 -0.9722 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8362 1.6831 1.2149 32 1 4.0091 0.5121 -0.1313 33 1 3.9097 3.5796 -0.2713 34 1 5.0444 2.4617 -1.0994 35 1 2.6377 4.5779 -1.9639 36 1 3.7907 4.0198 -3.1998 37 1 2.0501 3.7049 -3.3994 38 1 -0.4733 1.9369 -0.0863 39 1 -2.0755 1.3483 -2.2849 40 1 -1.9958 3.1244 -2.1979 41 1 -3.3915 3.2927 1.2894 42 1 -1.6569 3.1235 0.9267 43 1 -2.6545 4.2645 -0.0068 44 1 -3.0324 0.0403 -0.5454 45 1 -2.0112 0.7231 0.7427 46 1 -3.7843 0.7789 0.8890 47 1 -6.0768 2.4342 1.5891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:38 Heat of formation + Delta-G solvation = -8.842068 kcal Electronic energy + Delta-G solvation = -24501.071795 eV Core-core repulsion = 21298.854259 eV Total energy + Delta-G solvation = -3202.217536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59201 -37.84122 -36.43174 -34.43492 -32.59072 -31.53549 -30.48725 -30.04938 -26.29405 -25.68188 -25.20195 -24.79012 -22.48834 -22.16143 -21.03781 -18.88211 -18.72179 -17.51270 -16.77708 -15.80883 -15.26248 -14.82012 -14.64061 -14.17497 -13.74558 -13.57853 -13.49873 -13.27367 -13.13859 -12.86127 -12.64859 -12.37853 -12.09834 -11.85245 -11.73902 -11.56538 -11.21580 -10.99694 -10.94612 -10.85178 -10.72516 -10.66375 -10.56151 -10.50092 -10.29550 -10.09802 -9.54528 -9.48689 -9.21213 -8.76584 -8.51041 -8.31380 -7.81287 -5.99097 -4.08343 3.01414 3.29890 3.37468 3.42700 3.63205 4.32121 4.43635 4.45718 4.71818 4.74386 5.00606 5.15266 5.22538 5.27316 5.34316 5.44238 5.52070 5.59990 5.67494 5.73763 5.84118 5.86772 6.00145 6.14667 6.19915 6.23228 6.29775 6.38593 6.41124 6.58737 6.64258 6.68925 6.86597 6.89463 7.02077 7.08250 7.17939 7.41015 7.54106 7.59203 7.73481 8.06420 8.17058 8.43388 8.52708 8.91428 9.13817 9.56890 11.01949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.004603 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.088084 B = 6081.457680 C = 6584.278890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C 0.130 3.870 4 H 0.069 0.931 5 C -0.126 4.126 6 C -0.131 4.131 7 C 0.155 3.845 8 H 0.068 0.932 9 C -0.169 4.169 10 N -0.637 5.637 11 C 0.717 3.283 12 O -0.594 6.594 13 N -0.733 5.733 14 C 0.145 3.855 15 C 0.057 3.943 16 C -0.129 4.129 17 C -0.140 4.140 18 C -0.503 4.503 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.891 3.109 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.401 0.599 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.003 0.997 43 H 0.026 0.974 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.083 0.917 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.474 -2.422 1.436 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.087 0.913 5 C -0.164 4.164 6 C -0.169 4.169 7 C 0.051 3.949 8 H 0.086 0.914 9 C -0.227 4.227 10 N -0.377 5.377 11 C 0.420 3.580 12 O -0.473 6.473 13 N -0.393 5.393 14 C 0.022 3.978 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.197 4.197 18 C -0.542 4.542 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.719 3.281 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.243 0.757 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.102 0.898 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.127 -2.173 0.716 17.279 hybrid contribution -0.891 0.091 0.237 0.927 sum 16.236 -2.083 0.952 16.396 Atomic orbital electron populations 1.23090 0.94470 1.02045 1.05073 1.22036 0.97510 0.95671 1.02067 1.21664 0.95710 0.93597 0.86447 0.91271 1.22641 0.93885 0.99379 1.00451 1.22921 0.98753 0.99125 0.96071 1.21638 0.82482 0.96874 0.93874 0.91387 1.22176 1.03176 0.95671 1.01668 1.47726 1.04388 1.64522 1.21047 1.15559 0.79382 0.78323 0.84729 1.90811 1.85064 1.55567 1.15890 1.46490 1.05657 1.74986 1.12214 1.21621 0.78734 1.00333 0.97117 1.18347 0.92196 0.92894 0.90949 1.21801 0.97747 0.97844 1.01316 1.22084 1.00310 0.97088 1.00220 1.20996 0.91015 1.49003 0.93166 0.92459 1.24865 0.98742 0.95030 0.94860 1.69814 1.29929 1.49395 1.03246 0.86589 0.84016 0.78417 0.79054 1.20860 1.21257 1.19848 0.92948 0.91844 0.88520 0.91684 0.91362 0.90227 0.90501 0.90567 0.90143 0.92890 0.92385 0.89157 0.75704 0.93453 0.92472 0.89525 0.97803 0.95494 0.95759 0.96292 0.89832 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 6.32 37.16 0.23 -2.47 16 2 C -0.13 -1.56 5.43 -26.73 -0.15 -1.71 16 3 C 0.13 1.52 2.81 -66.95 -0.19 1.33 16 4 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 5 C -0.13 -1.07 6.48 -24.90 -0.16 -1.23 16 6 C -0.13 -1.16 6.51 -24.46 -0.16 -1.32 16 7 C 0.16 1.91 3.72 -66.30 -0.25 1.67 16 8 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 9 C -0.17 -2.21 9.01 37.15 0.33 -1.88 16 10 N -0.64 -9.34 2.98 -161.10 -0.48 -9.82 16 11 C 0.72 13.44 7.05 -86.92 -0.61 12.82 16 12 O -0.59 -13.09 14.28 5.29 0.08 -13.01 16 13 N -0.73 -13.69 2.39 -65.22 -0.16 -13.84 16 14 C 0.14 3.15 4.27 -4.04 -0.02 3.14 16 15 C 0.06 1.33 0.51 -155.66 -0.08 1.25 16 16 C -0.13 -2.98 7.96 37.16 0.30 -2.69 16 17 C -0.14 -3.11 7.62 37.16 0.28 -2.83 16 18 C -0.50 -13.27 8.01 -34.44 -0.28 -13.54 16 19 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 20 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 21 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 22 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.94 4.63 -51.93 -0.24 0.70 16 28 H 0.10 1.64 4.52 -52.69 -0.24 1.41 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.50 5.78 -51.93 -0.30 1.20 16 38 H 0.40 6.96 2.54 -40.82 -0.10 6.86 16 39 H 0.05 1.06 8.12 -51.93 -0.42 0.63 16 40 H 0.06 1.34 8.01 -51.93 -0.42 0.93 16 41 H 0.09 2.19 5.97 -51.93 -0.31 1.88 16 42 H 0.00 0.06 6.69 -51.93 -0.35 -0.28 16 43 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 45 H 0.02 0.36 4.24 -51.93 -0.22 0.14 16 46 H 0.08 2.09 6.04 -51.93 -0.31 1.78 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -28.57 338.19 -8.70 -37.26 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.90 Total: 7.41 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.83 Total: -5.80 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.12 Total: -46.80 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.57 -8.70 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.422 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds