Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47043 * 2 1 4 4 H 1.08994 * 110.00108 * 309.20048 * 3 2 1 5 5 C 1.54333 * 109.88279 * 188.09930 * 3 2 1 6 6 C 1.55157 * 102.94327 * 218.39434 * 5 3 2 7 7 C 1.54911 * 101.58165 * 35.50247 * 6 5 3 8 8 H 1.08999 * 110.36778 * 81.82728 * 7 6 5 9 9 C 1.53002 * 110.36524 * 204.15272 * 7 6 5 10 10 N 1.47028 * 109.88036 * 70.29884 * 3 2 1 11 11 C 1.34773 * 125.64097 * 298.38942 * 10 3 2 12 12 O 1.21584 * 120.00686 * 2.87511 * 11 10 3 13 13 N 1.34780 * 119.99632 * 182.87906 * 11 10 3 14 14 C 1.46507 * 119.99986 * 185.70226 * 13 11 10 15 15 C 1.53003 * 109.46834 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47181 * 299.99578 * 15 14 13 17 17 C 1.52995 * 109.47365 * 59.99998 * 15 14 13 18 18 C 1.50705 * 109.46775 * 180.02562 * 15 14 13 19 19 H 1.08000 * 119.99759 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99858 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00199 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99983 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47130 * 59.99893 * 22 20 18 24 24 H 1.48498 * 109.47038 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47298 * 299.99720 * 22 20 18 26 26 H 1.09000 * 109.47193 * 154.10553 * 1 2 3 27 27 H 1.08996 * 109.46687 * 274.10833 * 1 2 3 28 28 H 1.08997 * 109.46971 * 34.10822 * 1 2 3 29 29 H 1.09010 * 109.46975 * 240.00730 * 2 1 3 30 30 H 1.08993 * 109.47177 * 120.00502 * 2 1 3 31 31 H 1.09001 * 110.71605 * 100.02911 * 5 3 2 32 32 H 1.09000 * 110.71416 * 336.75994 * 5 3 2 33 33 H 1.08991 * 111.00577 * 153.57908 * 6 5 3 34 34 H 1.09004 * 111.00252 * 277.39038 * 6 5 3 35 35 H 1.09000 * 109.47054 * 79.92194 * 9 7 6 36 36 H 1.08999 * 109.46963 * 199.92212 * 9 7 6 37 37 H 1.08997 * 109.46841 * 319.91963 * 9 7 6 38 38 H 0.96997 * 120.00156 * 5.69739 * 13 11 10 39 39 H 1.09000 * 109.46456 * 299.99650 * 14 13 11 40 40 H 1.09001 * 109.46969 * 59.99518 * 14 13 11 41 41 H 1.09002 * 109.47168 * 60.00218 * 16 15 14 42 42 H 1.08998 * 109.47209 * 180.02562 * 16 15 14 43 43 H 1.09006 * 109.47167 * 300.00234 * 16 15 14 44 44 H 1.09000 * 109.47143 * 59.99663 * 17 15 14 45 45 H 1.08994 * 109.47160 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.46813 * 299.99677 * 17 15 14 47 47 H 0.97000 * 119.99996 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5539 2.0098 -0.7937 5 6 3.5696 1.4584 -0.2045 6 6 4.0341 2.6017 0.7360 7 6 3.0497 2.4478 1.9223 8 1 3.3901 1.6636 2.5984 9 6 2.9077 3.7741 2.6717 10 7 1.7672 2.0693 1.3017 11 6 0.5467 2.2646 1.8389 12 8 -0.4440 1.8631 1.2596 13 7 0.4243 2.9051 3.0184 14 6 -0.8871 3.0080 3.6635 15 6 -0.7492 3.7764 4.9794 16 6 0.2172 3.0342 5.9045 17 6 -0.2085 5.1794 4.6966 18 6 -2.0981 3.8817 5.6432 19 1 -2.9668 3.4448 5.1733 20 6 -2.2233 4.5369 6.8499 21 7 -1.1655 5.0694 7.4218 22 14 -3.8953 4.6681 7.6724 23 1 -4.4199 3.3063 7.9474 24 1 -3.7615 5.4137 8.9496 25 1 -4.8336 5.3880 6.7744 26 1 -0.3633 -0.9245 -0.4488 27 1 -0.3632 0.0736 1.0250 28 1 -0.3633 0.8509 -0.5763 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8177 1.6869 -1.2410 32 1 4.0089 0.5078 0.0978 33 1 5.0633 2.4474 1.0599 34 1 3.9194 3.5735 0.2559 35 1 2.2207 4.4252 2.1311 36 1 2.5185 3.5861 3.6724 37 1 3.8826 4.2558 2.7457 38 1 1.2044 3.2978 3.4403 39 1 -1.5757 3.5364 3.0042 40 1 -1.2722 2.0085 3.8653 41 1 1.1929 2.9575 5.4246 42 1 0.3151 3.5813 6.8421 43 1 -0.1681 2.0346 6.1060 44 1 -0.8970 5.7081 4.0375 45 1 -0.1098 5.7265 5.6340 46 1 0.7672 5.1027 4.2167 47 1 -1.2536 5.5300 8.2710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -15.820028 kcal Electronic energy + Delta-G solvation = -24263.543723 eV Core-core repulsion = 21061.023600 eV Total energy + Delta-G solvation = -3202.520123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48942 -37.74675 -36.32119 -34.43473 -32.61010 -31.55935 -30.32744 -30.18379 -25.94353 -25.69894 -25.53597 -24.85129 -22.58436 -21.82076 -21.10346 -19.22739 -18.65864 -17.32796 -16.59696 -15.86800 -15.28451 -14.81538 -14.58912 -14.32059 -14.05524 -13.73146 -13.40934 -13.11472 -12.88285 -12.83068 -12.62061 -12.45047 -12.13667 -11.90909 -11.59642 -11.35348 -11.28281 -11.14177 -10.95794 -10.83270 -10.76353 -10.69472 -10.52956 -10.46279 -10.27622 -10.14381 -9.58880 -9.32274 -9.17036 -8.76400 -8.38360 -8.32954 -7.97711 -5.99129 -4.08800 3.02417 3.32322 3.36253 3.40498 3.72171 4.30410 4.42213 4.43826 4.70388 4.76052 4.99953 5.13641 5.20842 5.27557 5.31254 5.44078 5.47972 5.52883 5.63336 5.66445 5.81484 5.92421 6.01941 6.13036 6.15616 6.28568 6.31096 6.42957 6.53552 6.56563 6.63995 6.84048 6.85662 6.97951 7.00531 7.06908 7.25900 7.42639 7.58059 7.58664 7.72617 8.03915 8.15765 8.42343 8.58286 8.91016 9.21160 9.56698 11.02329 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.004459 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.900435 B = 6277.861780 C = 6989.741595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.156 3.844 4 H 0.070 0.930 5 C -0.130 4.130 6 C -0.127 4.127 7 C 0.128 3.872 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.634 5.634 11 C 0.708 3.292 12 O -0.583 6.583 13 N -0.743 5.743 14 C 0.147 3.853 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.002 0.998 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -4.831 -11.680 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.088 0.912 5 C -0.168 4.168 6 C -0.165 4.165 7 C 0.024 3.976 8 H 0.091 0.909 9 C -0.235 4.235 10 N -0.375 5.375 11 C 0.411 3.589 12 O -0.462 6.462 13 N -0.407 5.407 14 C 0.024 3.976 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.187 4.187 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.104 0.896 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.035 -4.994 -11.839 17.606 hybrid contribution -0.513 0.240 0.722 0.917 sum 11.523 -4.753 -11.118 16.702 Atomic orbital electron populations 1.22124 0.93709 0.99206 1.04546 1.21928 0.98175 0.95447 1.01123 1.21470 0.94475 0.93601 0.85247 0.91179 1.22722 0.94403 0.99321 1.00315 1.22816 0.98666 0.99348 0.95710 1.21872 0.84407 0.96434 0.94919 0.90930 1.22450 1.03293 0.97152 1.00645 1.47795 1.04024 1.64830 1.20806 1.15655 0.82166 0.79518 0.81607 1.90924 1.36388 1.56017 1.62908 1.46467 1.13692 1.58872 1.21626 1.21548 0.81636 0.99829 0.94579 1.18345 0.95764 0.91367 0.88962 1.21829 0.94920 0.99279 1.02644 1.21829 0.95533 0.99704 1.01666 1.20950 0.92954 1.35364 1.04988 0.92480 1.24871 0.96558 0.95134 0.96925 1.69793 1.28245 1.36877 1.17653 0.86635 0.84438 0.78194 0.78595 1.20306 1.21365 1.20290 0.95756 0.90110 0.92075 0.92058 0.92323 0.90225 0.90542 0.90035 0.90474 0.90992 0.90926 0.90633 0.75708 0.93058 0.93341 0.97882 0.89621 0.95444 0.95434 0.89668 0.97704 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.10 37.16 0.30 -1.85 16 2 C -0.13 -1.61 5.41 -26.73 -0.14 -1.75 16 3 C 0.16 1.92 3.06 -66.94 -0.20 1.72 16 4 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 5 C -0.13 -1.11 6.47 -24.89 -0.16 -1.27 16 6 C -0.13 -1.08 6.43 -24.58 -0.16 -1.24 16 7 C 0.13 1.47 3.76 -66.42 -0.25 1.22 16 8 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 9 C -0.18 -2.10 7.76 37.16 0.29 -1.81 16 10 N -0.63 -9.27 2.96 -161.23 -0.48 -9.75 16 11 C 0.71 13.26 7.83 -86.92 -0.68 12.58 16 12 O -0.58 -12.41 11.16 5.29 0.06 -12.35 16 13 N -0.74 -14.21 4.57 -65.22 -0.30 -14.51 16 14 C 0.15 3.27 4.51 -4.04 -0.02 3.26 16 15 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 16 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 17 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 18 C -0.50 -13.38 8.01 -34.44 -0.28 -13.66 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.73 9.35 55.43 0.52 -23.22 16 22 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 1.52 5.83 -51.95 -0.30 1.21 16 28 H 0.06 1.03 6.77 -51.93 -0.35 0.68 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.07 0.97 7.69 -51.93 -0.40 0.57 16 36 H 0.07 0.98 5.57 -51.93 -0.29 0.69 16 37 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 38 H 0.40 6.97 1.27 -40.82 -0.05 6.92 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.00 0.05 6.57 -51.93 -0.34 -0.30 16 42 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 46 H 0.00 0.08 6.81 -51.93 -0.35 -0.27 16 47 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -28.54 344.01 -9.05 -37.59 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.14 Total: 6.41 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.87 Total: -5.23 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.26 Total: -47.48 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.06 Total: -12.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.54 -9.05 -37.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds