Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47268 * 2 1 4 4 H 1.09004 * 109.87409 * 306.47547 * 3 2 1 5 5 C 1.54322 * 110.01264 * 67.56799 * 3 2 1 6 6 C 1.55153 * 102.94421 * 141.68488 * 5 3 2 7 7 H 1.08997 * 111.01045 * 82.57086 * 6 5 3 8 8 C 1.52998 * 111.04154 * 206.41250 * 6 5 3 9 9 C 1.54913 * 101.58154 * 324.49716 * 6 5 3 10 10 N 1.47018 * 109.88381 * 185.45618 * 3 2 1 11 11 C 1.34773 * 125.64835 * 61.52271 * 10 3 2 12 12 O 1.21584 * 120.00227 * 355.06686 * 11 10 3 13 13 N 1.34779 * 120.00316 * 175.06866 * 11 10 3 14 14 C 1.46491 * 120.00426 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47411 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47003 * 299.99676 * 15 14 13 17 17 C 1.52997 * 109.47266 * 59.99897 * 15 14 13 18 18 C 1.50705 * 109.47437 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99410 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00094 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00342 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 120.00149 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47012 * 89.99477 * 22 20 18 24 24 H 1.48497 * 109.47117 * 210.00014 * 22 20 18 25 25 H 1.48499 * 109.46612 * 329.99892 * 22 20 18 26 26 H 1.09000 * 109.47599 * 304.95957 * 1 2 3 27 27 H 1.08998 * 109.46785 * 64.95733 * 1 2 3 28 28 H 1.09000 * 109.47290 * 184.95257 * 1 2 3 29 29 H 1.08998 * 109.46802 * 239.99556 * 2 1 3 30 30 H 1.08998 * 109.46675 * 119.99762 * 2 1 3 31 31 H 1.09003 * 110.72079 * 23.32211 * 5 3 2 32 32 H 1.09000 * 110.72209 * 260.04819 * 5 3 2 33 33 H 1.08997 * 109.47499 * 176.79411 * 8 6 5 34 34 H 1.08998 * 109.47056 * 296.79641 * 8 6 5 35 35 H 1.09003 * 109.47454 * 56.79224 * 8 6 5 36 36 H 1.09002 * 110.37024 * 155.84451 * 9 6 5 37 37 H 1.09000 * 110.36798 * 278.17543 * 9 6 5 38 38 H 0.97006 * 119.99851 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47322 * 300.00215 * 14 13 11 40 40 H 1.09005 * 109.47305 * 60.00111 * 14 13 11 41 41 H 1.09004 * 109.46847 * 59.99965 * 16 15 14 42 42 H 1.09001 * 109.47123 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.47231 * 300.00288 * 16 15 14 44 44 H 1.08996 * 109.47297 * 59.99958 * 17 15 14 45 45 H 1.08993 * 109.47128 * 180.02562 * 17 15 14 46 46 H 1.09004 * 109.46979 * 300.00277 * 17 15 14 47 47 H 0.96998 * 120.00486 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5890 1.9949 -0.8243 5 6 1.6944 2.1248 1.3403 6 6 2.9513 2.9890 1.6246 7 1 2.9056 3.9346 1.0845 8 6 3.1267 3.2262 3.1258 9 6 4.0813 2.0865 1.0693 10 7 3.5043 1.4551 -0.1315 11 6 4.2032 0.9704 -1.1769 12 8 3.6274 0.3892 -2.0763 13 7 5.5407 1.1299 -1.2255 14 6 6.3005 0.6027 -2.3615 15 6 7.7860 0.9155 -2.1708 16 6 7.9813 2.4306 -2.0859 17 6 8.2827 0.2639 -0.8787 18 6 8.5677 0.3736 -3.3398 19 1 8.0560 -0.1427 -4.1386 20 6 9.9359 0.5360 -3.3890 21 7 10.5590 1.1642 -2.4160 22 14 10.9048 -0.1363 -4.8377 23 1 10.9931 0.8998 -5.8978 24 1 12.2721 -0.5048 -4.3905 25 1 10.2194 -1.3385 -5.3764 26 1 -0.3634 0.5888 0.8422 27 1 -0.3633 0.4350 -0.9311 28 1 -0.3634 -1.0238 0.0887 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5513 1.3823 2.1254 32 1 0.8099 2.7531 1.2364 33 1 4.0455 3.7859 3.3003 34 1 2.2775 3.7942 3.5056 35 1 3.1821 2.2673 3.6412 36 1 4.9500 2.6878 0.8013 37 1 4.3555 1.3277 1.8023 38 1 6.0002 1.5939 -0.5081 39 1 6.1618 -0.4768 -2.4219 40 1 5.9465 1.0665 -3.2822 41 1 7.4159 2.8230 -1.2405 42 1 9.0396 2.6535 -1.9496 43 1 7.6275 2.8947 -3.0064 44 1 8.1435 -0.8154 -0.9392 45 1 9.3408 0.4872 -0.7426 46 1 7.7173 0.6563 -0.0333 47 1 11.5215 1.2788 -2.4507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459254418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -49.748784 kcal Electronic energy + Delta-G solvation = -23508.983772 eV Core-core repulsion = 20304.992388 eV Total energy + Delta-G solvation = -3203.991384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24320 -38.01631 -36.20940 -34.02855 -33.17778 -32.41522 -30.62525 -28.48221 -26.47296 -25.69662 -25.56569 -24.91702 -23.59879 -21.24308 -20.57303 -19.34640 -18.76218 -17.77080 -16.47603 -15.76627 -15.08634 -14.86018 -14.73209 -14.64670 -13.92889 -13.61844 -13.53063 -13.26490 -13.10034 -12.86450 -12.62646 -12.50000 -12.24107 -12.13629 -11.77160 -11.50171 -11.36436 -11.24570 -11.16423 -10.90256 -10.85742 -10.79030 -10.66751 -10.45749 -10.34777 -10.17398 -9.60364 -9.59184 -9.26831 -8.76198 -8.58804 -8.37232 -8.05195 -5.99648 -4.09415 2.98075 3.30208 3.37010 3.41618 3.67003 4.29829 4.32644 4.43128 4.60969 4.70467 4.99123 5.13747 5.17116 5.27128 5.29278 5.32371 5.37469 5.43890 5.51998 5.64533 5.68448 5.74547 5.86956 5.93303 6.00004 6.11053 6.17377 6.28068 6.35304 6.40734 6.53858 6.61435 6.84516 6.85633 6.97427 7.06371 7.15797 7.38966 7.49517 7.58777 7.72354 8.03750 8.15363 8.41254 8.50563 8.90510 9.11392 9.56200 11.01818 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.003861 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.048917 B = 7249.485075 C = 7993.477131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.159 3.841 4 H 0.069 0.931 5 C -0.123 4.123 6 C -0.105 4.105 7 H 0.084 0.916 8 C -0.141 4.141 9 C 0.104 3.896 10 N -0.640 5.640 11 C 0.716 3.284 12 O -0.595 6.595 13 N -0.732 5.732 14 C 0.150 3.850 15 C 0.056 3.944 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 4.037 11.703 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.055 3.945 4 H 0.088 0.912 5 C -0.160 4.160 6 C -0.125 4.125 7 H 0.102 0.898 8 C -0.198 4.198 9 C -0.019 4.019 10 N -0.379 5.379 11 C 0.418 3.582 12 O -0.474 6.474 13 N -0.386 5.386 14 C 0.027 3.973 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.023 0.977 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.322 3.607 10.975 19.189 hybrid contribution 0.852 -0.107 -0.415 0.953 sum -14.471 3.500 10.560 18.253 Atomic orbital electron populations 1.21715 0.95605 1.01533 1.01567 1.21946 0.95585 0.96664 1.03444 1.21347 0.79737 0.96268 0.97160 0.91249 1.22817 0.97819 0.98845 0.96567 1.22336 0.94733 0.98537 0.96846 0.89757 1.21696 1.02021 1.01996 0.94107 1.22303 0.96611 0.95568 0.87452 1.47644 1.06541 1.64535 1.19175 1.15593 0.82021 0.79449 0.81135 1.90858 1.69571 1.48145 1.38805 1.45547 1.04730 1.61453 1.26916 1.21579 0.92485 0.97317 0.85882 1.18368 0.87877 0.93171 0.95106 1.21809 1.03160 0.97108 0.96543 1.21805 1.03437 0.98048 0.95335 1.20989 0.91849 1.36226 1.05213 0.92412 1.24874 0.97602 0.94993 0.96037 1.69806 1.08915 1.42148 1.31663 0.86572 0.79218 0.79398 0.82693 1.20730 1.21295 1.19892 0.92892 0.92722 0.92784 0.89835 0.92290 0.90407 0.90284 0.92162 0.92245 0.92323 0.91003 0.91660 0.77209 0.93005 0.93005 0.97699 0.89655 0.95471 0.95470 0.89656 0.97665 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.83 37.16 0.37 -1.05 16 2 C -0.14 -1.73 5.41 -26.73 -0.14 -1.87 16 3 C 0.16 1.97 2.91 -66.96 -0.20 1.78 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.12 -1.07 5.03 -24.90 -0.13 -1.19 16 6 C -0.11 -0.92 3.64 -88.47 -0.32 -1.24 16 7 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.14 -0.97 9.29 37.16 0.35 -0.62 16 9 C 0.10 1.19 6.15 -2.52 -0.02 1.18 16 10 N -0.64 -9.45 3.07 -168.69 -0.52 -9.97 16 11 C 0.72 13.69 8.31 -86.92 -0.72 12.97 16 12 O -0.59 -13.41 15.12 5.29 0.08 -13.33 16 13 N -0.73 -14.02 4.92 -65.23 -0.32 -14.34 16 14 C 0.15 3.34 4.50 -4.05 -0.02 3.33 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.50 -13.40 8.01 -34.44 -0.28 -13.68 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.78 9.35 55.43 0.52 -23.26 16 22 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.42 7.36 -51.93 -0.38 0.04 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.35 6.53 -51.93 -0.34 1.01 16 30 H 0.06 0.71 8.02 -51.93 -0.42 0.30 16 31 H 0.08 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 36 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 37 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 38 H 0.39 6.88 4.56 -40.82 -0.19 6.69 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 46 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -29.21 357.11 -9.02 -38.24 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.47 Total: 4.20 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.68 Total: -2.81 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.32 Total: -47.57 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.21 -9.02 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459254418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.513 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds