Wall clock time and date at job start Tue Mar 31 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46850 * 2 1 4 4 H 1.08999 * 109.99666 * 53.20471 * 3 2 1 5 5 C 1.54322 * 109.88502 * 292.10419 * 3 2 1 6 6 C 1.55156 * 102.94402 * 218.39013 * 5 3 2 7 7 H 1.09005 * 111.00200 * 277.43310 * 6 5 3 8 8 C 1.52991 * 111.00722 * 153.57622 * 6 5 3 9 9 C 1.54692 * 101.67689 * 35.33424 * 6 5 3 10 10 N 1.47022 * 109.88113 * 174.29379 * 3 2 1 11 11 C 1.34777 * 125.65267 * 298.32479 * 10 3 2 12 12 O 1.21587 * 119.99598 * 4.96168 * 11 10 3 13 13 N 1.34769 * 120.00392 * 184.96954 * 11 10 3 14 14 C 1.46502 * 120.00147 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46973 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47013 * 60.00095 * 15 14 13 17 17 C 1.53002 * 109.47270 * 299.99917 * 15 14 13 18 18 C 1.50706 * 109.46903 * 179.97438 * 15 14 13 19 19 H 1.07997 * 119.99948 * 1.62213 * 18 15 14 20 20 C 1.37871 * 119.99765 * 181.62614 * 18 15 14 21 21 N 1.31515 * 119.99759 * 193.64602 * 20 18 15 22 22 Si 1.86804 * 120.00294 * 13.63958 * 20 18 15 23 23 H 1.48499 * 109.46739 * 85.29403 * 22 20 18 24 24 H 1.48499 * 109.47070 * 205.29217 * 22 20 18 25 25 H 1.48496 * 109.46974 * 325.29602 * 22 20 18 26 26 H 1.09001 * 109.46658 * 185.26618 * 1 2 3 27 27 H 1.08993 * 109.47129 * 305.26246 * 1 2 3 28 28 H 1.08997 * 109.47187 * 65.27448 * 1 2 3 29 29 H 1.09002 * 109.47399 * 240.00339 * 2 1 3 30 30 H 1.08998 * 109.47326 * 119.99893 * 2 1 3 31 31 H 1.08995 * 110.71587 * 336.75688 * 5 3 2 32 32 H 1.08998 * 110.71834 * 100.02382 * 5 3 2 33 33 H 1.09008 * 109.47076 * 59.99862 * 8 6 5 34 34 H 1.08994 * 109.47333 * 179.97438 * 8 6 5 35 35 H 1.09005 * 109.47034 * 300.00045 * 8 6 5 36 36 H 1.09000 * 110.39550 * 204.36863 * 9 6 5 37 37 H 1.09001 * 110.23633 * 82.10776 * 9 6 5 38 38 H 0.96997 * 120.00134 * 359.97438 * 13 11 10 39 39 H 1.08999 * 109.47080 * 60.00032 * 14 13 11 40 40 H 1.08994 * 109.47189 * 299.99916 * 14 13 11 41 41 H 1.09002 * 109.47350 * 299.99919 * 16 15 14 42 42 H 1.08997 * 109.47263 * 179.97438 * 16 15 14 43 43 H 1.09003 * 109.47094 * 59.99830 * 16 15 14 44 44 H 1.08998 * 109.46570 * 188.74184 * 17 15 14 45 45 H 1.08997 * 109.47086 * 308.74444 * 17 15 14 46 46 H 1.09000 * 109.46743 * 68.74282 * 17 15 14 47 47 H 0.97003 * 120.00108 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5858 1.9985 0.8202 5 6 1.7001 2.1194 -1.3445 6 6 2.9583 2.9822 -1.6272 7 1 2.9105 3.9301 -1.0911 8 6 3.1394 3.2124 -3.1288 9 6 4.0855 2.0868 -1.0610 10 7 3.5037 1.4554 0.1375 11 6 4.1983 0.9749 1.1877 12 8 3.6186 0.3971 2.0868 13 7 5.5354 1.1351 1.2415 14 6 6.2904 0.6133 2.3834 15 6 7.7766 0.9257 2.1978 16 6 7.9719 2.4404 2.1066 17 6 8.2792 0.2682 0.9109 18 6 8.5532 0.3894 3.3729 19 1 8.0417 -0.1458 4.1592 20 6 9.9165 0.5822 3.4440 21 7 10.6329 -0.1009 4.3099 22 14 10.7461 1.8135 2.3104 23 1 10.6727 3.1687 2.9131 24 1 12.1688 1.4321 2.1217 25 1 10.0563 1.8186 0.9954 26 1 -0.3633 -1.0234 0.0943 27 1 -0.3633 0.5933 0.8391 28 1 -0.3633 0.4298 -0.9334 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5600 1.3738 -2.1270 32 1 0.8152 2.7483 -1.2468 33 1 2.2652 3.7289 -3.5253 34 1 4.0281 3.8201 -3.2986 35 1 3.2536 2.2524 -3.6324 36 1 4.9506 2.6915 -0.7891 37 1 4.3666 1.3276 -1.7910 38 1 5.9979 1.5958 0.5241 39 1 6.1516 -0.4659 2.4481 40 1 5.9321 1.0813 3.3003 41 1 7.4101 2.8287 1.2570 42 1 9.0307 2.6630 1.9749 43 1 7.6138 2.9087 3.0235 44 1 9.3642 0.3577 0.8571 45 1 8.0009 -0.7856 0.9086 46 1 7.8305 0.7644 0.0503 47 1 11.5921 0.0344 4.3597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459254419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:43 Heat of formation + Delta-G solvation = -29.284239 kcal Electronic energy + Delta-G solvation = -23609.700882 eV Core-core repulsion = 20406.596907 eV Total energy + Delta-G solvation = -3203.103975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35217 -38.18533 -36.55308 -34.10752 -33.25099 -32.45982 -31.28902 -28.60441 -26.59790 -26.38344 -25.82335 -24.88287 -23.70703 -21.32829 -20.66013 -19.44492 -19.14020 -17.79175 -16.58754 -16.04894 -15.34698 -15.09198 -14.85869 -14.78385 -14.14673 -13.69778 -13.64766 -13.33531 -13.31501 -12.93938 -12.85775 -12.61719 -12.50292 -12.35374 -12.18008 -12.02893 -11.85127 -11.56925 -11.36065 -11.23302 -10.99630 -10.87182 -10.51192 -10.40478 -10.26473 -10.16226 -10.04842 -9.66422 -9.11287 -8.69767 -8.66110 -8.46658 -8.20127 -6.13188 -4.10395 2.86904 3.24642 3.31481 3.39084 3.56131 4.20861 4.24723 4.36583 4.51924 4.59975 4.91318 5.07323 5.10246 5.17649 5.22474 5.24972 5.31799 5.35678 5.45112 5.56285 5.61840 5.67872 5.77649 5.79729 5.87911 5.95966 6.03958 6.06449 6.10376 6.16728 6.25567 6.36934 6.44731 6.55358 6.57273 6.65976 6.72822 6.85909 7.03571 7.24546 7.35156 7.45452 7.74492 8.32847 8.48679 8.92101 8.99222 9.50664 10.99964 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.004212 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.705501 B = 6646.323407 C = 7454.566770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.159 3.841 4 H 0.071 0.929 5 C -0.123 4.123 6 C -0.106 4.106 7 H 0.084 0.916 8 C -0.141 4.141 9 C 0.104 3.896 10 N -0.640 5.640 11 C 0.718 3.282 12 O -0.590 6.590 13 N -0.737 5.737 14 C 0.160 3.840 15 C 0.028 3.972 16 C -0.146 4.146 17 C -0.140 4.140 18 C -0.511 4.511 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.892 5.892 22 Si 0.885 3.115 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.249 1.249 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.391 0.609 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.020 0.980 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.442 6.707 -16.032 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.055 3.945 4 H 0.089 0.911 5 C -0.160 4.160 6 C -0.125 4.125 7 H 0.102 0.898 8 C -0.198 4.198 9 C -0.020 4.020 10 N -0.379 5.379 11 C 0.420 3.580 12 O -0.469 6.469 13 N -0.392 5.392 14 C 0.037 3.963 15 C 0.027 3.973 16 C -0.203 4.203 17 C -0.197 4.197 18 C -0.549 4.549 19 H 0.095 0.905 20 C -0.127 4.127 21 N -0.528 5.528 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.175 1.175 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.603 6.175 -15.159 23.315 hybrid contribution 0.931 0.958 -0.836 1.576 sum -15.672 7.133 -15.995 23.502 Atomic orbital electron populations 1.21708 0.95537 1.01715 1.01423 1.21948 0.95659 0.96558 1.03469 1.21384 0.79615 0.96360 0.97167 0.91142 1.22822 0.97810 0.98893 0.96521 1.22299 0.94764 0.98598 0.96821 0.89775 1.21696 1.02012 1.02035 0.94078 1.22265 0.96557 0.95621 0.87517 1.47656 1.06677 1.64565 1.18977 1.15543 0.81903 0.79440 0.81162 1.90881 1.69218 1.47964 1.38790 1.45540 1.05014 1.62057 1.26570 1.21374 0.90712 0.98183 0.85986 1.18735 0.91153 0.91805 0.95614 1.22346 0.99458 0.98818 0.99638 1.22274 1.01194 0.99956 0.96315 1.20719 0.92137 1.36378 1.05706 0.90495 1.24968 0.97084 0.95420 0.95255 1.69951 1.06610 1.39171 1.37108 0.87296 0.76867 0.81502 0.82513 1.21397 1.23417 1.17512 0.92711 0.92676 0.92975 0.92242 0.89819 0.90377 0.90218 0.92173 0.92237 0.92288 0.91130 0.91639 0.77434 0.92121 0.92217 0.95368 0.94086 0.92796 0.92594 0.93396 0.96121 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.69 37.16 0.36 -0.98 16 2 C -0.14 -1.64 5.41 -26.73 -0.14 -1.78 16 3 C 0.16 1.85 2.92 -66.95 -0.20 1.65 16 4 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.12 -0.98 5.21 -24.90 -0.13 -1.11 16 6 C -0.11 -0.84 3.62 -88.59 -0.32 -1.16 16 7 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.14 -0.86 9.31 37.15 0.35 -0.52 16 9 C 0.10 1.07 6.14 -2.64 -0.02 1.06 16 10 N -0.64 -8.80 3.07 -168.83 -0.52 -9.31 16 11 C 0.72 12.88 8.31 -86.93 -0.72 12.16 16 12 O -0.59 -12.75 15.13 5.29 0.08 -12.67 16 13 N -0.74 -12.98 4.96 -65.23 -0.32 -13.31 16 14 C 0.16 3.35 4.49 -4.04 -0.02 3.33 16 15 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 16 C -0.15 -3.00 7.51 37.16 0.28 -2.72 16 17 C -0.14 -2.90 7.55 37.16 0.28 -2.61 16 18 C -0.51 -13.89 8.62 -34.44 -0.30 -14.19 16 19 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 20 C 0.08 2.10 5.33 -17.82 -0.09 2.01 16 21 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 22 Si 0.89 21.19 22.80 -169.99 -3.88 17.32 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.25 -5.41 4.61 56.52 0.26 -5.15 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 29 H 0.06 0.68 8.00 -51.93 -0.42 0.26 16 30 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 31 H 0.08 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 36 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 37 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 38 H 0.39 6.08 4.65 -40.82 -0.19 5.89 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 42 H 0.04 0.89 2.23 -51.93 -0.12 0.77 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.22 4.30 -51.93 -0.22 1.00 16 45 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 46 H 0.02 0.35 7.11 -51.93 -0.37 -0.02 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -31.43 347.40 -7.73 -39.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.35 Total: 3.94 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.75 Total: -4.32 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.07 Total: -48.66 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -3.88 Total: 17.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.43 -7.73 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459254419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.880 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds