Wall clock time and date at job start Tue Mar 31 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47439 * 2 1 4 4 H 1.08998 * 109.99412 * 52.25719 * 3 2 1 5 5 C 1.54332 * 109.98871 * 291.21933 * 3 2 1 6 6 C 1.55159 * 103.01702 * 218.66100 * 5 3 2 7 7 H 1.09003 * 111.00114 * 153.38362 * 6 5 3 8 8 C 1.52997 * 111.03937 * 277.21815 * 6 5 3 9 9 C 1.54911 * 101.58144 * 35.30879 * 6 5 3 10 10 N 1.47018 * 109.88077 * 173.35051 * 3 2 1 11 11 C 1.34775 * 125.65004 * 298.39584 * 10 3 2 12 12 O 1.21580 * 119.99961 * 4.08773 * 11 10 3 13 13 N 1.34777 * 119.99953 * 184.09836 * 11 10 3 14 14 C 1.46496 * 120.00021 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47436 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.46696 * 59.99764 * 15 14 13 17 17 C 1.52994 * 109.47395 * 300.00347 * 15 14 13 18 18 C 1.50693 * 109.47319 * 179.97438 * 15 14 13 19 19 H 1.07996 * 120.00482 * 4.70907 * 18 15 14 20 20 C 1.37879 * 120.00243 * 184.70237 * 18 15 14 21 21 N 1.31514 * 120.00348 * 152.49725 * 20 18 15 22 22 Si 1.86806 * 119.99719 * 332.49616 * 20 18 15 23 23 H 1.48498 * 109.46858 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47176 * 299.99939 * 22 20 18 25 25 H 1.48505 * 109.46891 * 60.00083 * 22 20 18 26 26 H 1.08999 * 109.47006 * 65.36246 * 1 2 3 27 27 H 1.09001 * 109.47161 * 185.36265 * 1 2 3 28 28 H 1.09000 * 109.46574 * 305.36228 * 1 2 3 29 29 H 1.09007 * 109.47014 * 240.00232 * 2 1 3 30 30 H 1.09001 * 109.47121 * 120.00529 * 2 1 3 31 31 H 1.09001 * 110.84900 * 100.20270 * 5 3 2 32 32 H 1.08991 * 110.67108 * 337.04369 * 5 3 2 33 33 H 1.09005 * 109.47378 * 173.66762 * 8 6 5 34 34 H 1.08998 * 109.47255 * 293.67203 * 8 6 5 35 35 H 1.09001 * 109.46930 * 53.66807 * 8 6 5 36 36 H 1.09000 * 110.36635 * 204.14956 * 9 6 5 37 37 H 1.09003 * 110.45619 * 81.87662 * 9 6 5 38 38 H 0.96998 * 120.00069 * 359.97438 * 13 11 10 39 39 H 1.09006 * 109.47111 * 59.99457 * 14 13 11 40 40 H 1.08995 * 109.47005 * 299.99308 * 14 13 11 41 41 H 1.09002 * 109.46905 * 173.40365 * 16 15 14 42 42 H 1.08997 * 109.47252 * 293.40770 * 16 15 14 43 43 H 1.09001 * 109.46889 * 53.40761 * 16 15 14 44 44 H 1.09004 * 109.47144 * 295.94048 * 17 15 14 45 45 H 1.09001 * 109.47322 * 55.94105 * 17 15 14 46 46 H 1.08998 * 109.47655 * 175.94278 * 17 15 14 47 47 H 0.96991 * 119.99864 * 354.91031 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5733 2.0029 0.8100 5 6 1.7211 2.1149 -1.3520 6 6 2.9864 2.9708 -1.6238 7 1 3.1308 3.1259 -2.6931 8 6 2.9145 4.3079 -0.8836 9 6 4.1026 2.0708 -1.0375 10 7 3.5015 1.4560 0.1601 11 6 4.1797 0.9800 1.2231 12 8 3.5842 0.4200 2.1230 13 7 5.5181 1.1250 1.2885 14 6 6.2553 0.6071 2.4436 15 6 7.7470 0.8998 2.2697 16 6 7.9611 2.4111 2.1637 17 6 8.2545 0.2223 0.9953 18 6 8.5053 0.3676 3.4582 19 1 7.9880 -0.1959 4.2206 20 6 9.8595 0.6000 3.5724 21 7 10.4211 0.6457 4.7607 22 14 10.8968 0.8497 2.0389 23 1 12.3106 1.0809 2.4300 24 1 10.8113 -0.3594 1.1811 25 1 10.3929 2.0270 1.2869 26 1 -0.3633 0.4284 -0.9341 27 1 -0.3633 -1.0232 0.0960 28 1 -0.3632 0.5948 0.8381 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.8374 2.7479 -1.2715 32 1 1.5874 1.3657 -2.1322 33 1 3.8593 4.8389 -0.9999 34 1 2.1059 4.9098 -1.2984 35 1 2.7270 4.1275 0.1749 36 1 4.9687 2.6721 -0.7611 37 1 4.3887 1.3022 -1.7555 38 1 5.9932 1.5715 0.5704 39 1 6.1030 -0.4696 2.5189 40 1 5.8936 1.0896 3.3515 41 1 9.0295 2.6271 2.1576 42 1 7.5110 2.7780 1.2413 43 1 7.4955 2.9047 3.0167 44 1 8.1684 -0.8593 1.0998 45 1 7.6580 0.5537 0.1453 46 1 9.2986 0.4895 0.8327 47 1 9.8726 0.5899 5.5587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459254427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:49 Heat of formation + Delta-G solvation = -37.285715 kcal Electronic energy + Delta-G solvation = -23750.742184 eV Core-core repulsion = 20547.291239 eV Total energy + Delta-G solvation = -3203.450945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40721 -38.20037 -36.49413 -34.07217 -33.18306 -32.35399 -31.20596 -28.44239 -26.82908 -26.34688 -25.81472 -24.48860 -23.60110 -21.71756 -20.26366 -19.44092 -19.08619 -17.87387 -16.66820 -16.19846 -15.48226 -15.00372 -14.83854 -14.44474 -14.30298 -13.82146 -13.68585 -13.46013 -13.18154 -12.92997 -12.71041 -12.58186 -12.39385 -12.19688 -12.00461 -11.83934 -11.72472 -11.60025 -11.31833 -11.21989 -11.09501 -10.87082 -10.56495 -10.48599 -10.16217 -10.05701 -9.92015 -9.68777 -9.01191 -8.87777 -8.68454 -8.20380 -8.12861 -6.51664 -4.07722 2.88006 3.33217 3.40269 3.56416 3.62328 4.21799 4.24768 4.46949 4.53767 4.63423 4.87220 5.03861 5.12007 5.15056 5.25137 5.30040 5.32603 5.39687 5.46069 5.61128 5.68089 5.73159 5.77727 5.82811 5.89968 5.95209 6.06757 6.10747 6.11679 6.16383 6.26038 6.39475 6.44924 6.56677 6.59883 6.68223 6.75647 6.86989 7.06126 7.28790 7.35964 7.49974 8.13458 8.35909 8.37021 8.87436 8.99537 9.56274 10.85526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.004212 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.897692 B = 6646.052975 C = 7175.255259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.160 3.840 4 H 0.070 0.930 5 C -0.123 4.123 6 C -0.104 4.104 7 H 0.088 0.912 8 C -0.143 4.143 9 C 0.103 3.897 10 N -0.637 5.637 11 C 0.717 3.283 12 O -0.592 6.592 13 N -0.737 5.737 14 C 0.162 3.838 15 C 0.034 3.966 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.605 4.605 19 H 0.060 0.940 20 C 0.043 3.957 21 N -0.891 5.891 22 Si 1.051 2.949 23 H -0.300 1.300 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.391 0.609 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.026 0.974 46 H 0.041 0.959 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 5.428 -16.124 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.056 3.944 4 H 0.088 0.912 5 C -0.161 4.161 6 C -0.123 4.123 7 H 0.107 0.893 8 C -0.200 4.200 9 C -0.021 4.021 10 N -0.377 5.377 11 C 0.419 3.581 12 O -0.471 6.471 13 N -0.392 5.392 14 C 0.039 3.961 15 C 0.032 3.968 16 C -0.197 4.197 17 C -0.204 4.204 18 C -0.642 4.642 19 H 0.079 0.921 20 C -0.164 4.164 21 N -0.522 5.522 22 Si 0.884 3.116 23 H -0.228 1.228 24 H -0.215 1.215 25 H -0.205 1.205 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.907 5.194 -15.823 22.350 hybrid contribution -1.264 -0.077 0.107 1.270 sum -16.170 5.116 -15.716 23.122 Atomic orbital electron populations 1.21706 0.95532 1.01696 1.01431 1.21953 0.95693 0.96634 1.03400 1.21353 0.79776 0.96197 0.97060 0.91205 1.22807 0.97897 0.98883 0.96515 1.22319 0.94800 0.94973 1.00214 0.89325 1.21747 1.01888 0.95567 1.00839 1.22307 0.96482 0.95724 0.87559 1.47640 1.06678 1.65027 1.18319 1.15555 0.82007 0.79326 0.81187 1.90875 1.68353 1.48785 1.39043 1.45568 1.04895 1.62850 1.25841 1.21368 0.91404 0.97808 0.85561 1.18670 0.90672 0.92434 0.95000 1.22216 1.01419 0.97988 0.98108 1.22337 0.99238 1.01218 0.97597 1.21649 0.95387 1.40225 1.06950 0.92147 1.25662 0.96087 0.92931 1.01755 1.70832 1.40329 1.42449 0.98632 0.84232 0.75236 0.76755 0.75419 1.22765 1.21537 1.20468 0.92961 0.92729 0.92686 0.92248 0.89897 0.90135 0.90497 0.92302 0.92421 0.92282 0.90993 0.91692 0.77401 0.92610 0.92498 0.92553 0.96211 0.93633 0.92868 0.95539 0.94100 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.70 37.16 0.36 -1.00 16 2 C -0.14 -1.65 5.42 -26.73 -0.14 -1.80 16 3 C 0.16 1.87 2.53 -66.95 -0.17 1.70 16 4 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.12 -0.99 5.29 -24.89 -0.13 -1.12 16 6 C -0.10 -0.82 3.72 -88.47 -0.33 -1.15 16 7 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 8 C -0.14 -1.17 9.24 37.16 0.34 -0.82 16 9 C 0.10 1.06 6.12 -2.53 -0.02 1.05 16 10 N -0.64 -8.77 3.05 -168.69 -0.51 -9.29 16 11 C 0.72 13.02 8.30 -86.92 -0.72 12.30 16 12 O -0.59 -12.95 15.15 5.29 0.08 -12.87 16 13 N -0.74 -13.22 4.92 -65.23 -0.32 -13.54 16 14 C 0.16 3.46 4.50 -4.04 -0.02 3.44 16 15 C 0.03 0.77 0.50 -155.66 -0.08 0.69 16 16 C -0.14 -2.97 7.88 37.16 0.29 -2.67 16 17 C -0.15 -3.05 7.56 37.15 0.28 -2.77 16 18 C -0.60 -16.51 8.43 -34.44 -0.29 -16.80 16 19 H 0.06 1.80 7.99 -52.49 -0.42 1.38 16 20 C 0.04 1.20 5.09 -17.82 -0.09 1.11 16 21 N -0.89 -26.80 13.70 55.43 0.76 -26.04 16 22 Si 1.05 25.00 23.36 -169.99 -3.97 21.02 16 23 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -6.51 6.74 56.52 0.38 -6.13 16 25 H -0.28 -6.00 5.65 56.52 0.32 -5.68 16 26 H 0.05 0.39 7.71 -51.93 -0.40 -0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.68 7.99 -51.92 -0.41 0.26 16 30 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 31 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.08 0.56 7.74 -51.93 -0.40 0.16 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.59 7.83 -51.93 -0.41 0.19 16 36 H 0.07 0.74 7.05 -51.93 -0.37 0.37 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.39 6.19 4.62 -40.82 -0.19 6.00 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.26 4.38 -51.93 -0.23 1.03 16 42 H 0.02 0.34 7.06 -51.93 -0.37 -0.02 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.46 6.76 -51.93 -0.35 0.10 16 46 H 0.04 0.87 2.64 -51.93 -0.14 0.73 16 47 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -31.21 348.58 -7.77 -38.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.34 Total: 4.31 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -0.71 Total: -7.84 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.08 Total: -48.86 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -3.97 Total: 21.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.21 -7.77 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459254427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.695 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds