Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08995 * 109.49436 * 305.06069 * 3 2 1 5 5 C 1.53041 * 109.49828 * 184.99524 * 3 2 1 6 6 C 1.53031 * 109.53895 * 178.68118 * 5 3 2 7 7 C 1.53192 * 109.31310 * 61.36520 * 6 5 3 8 8 N 1.46920 * 108.89365 * 305.29643 * 7 6 5 9 9 C 1.34782 * 120.62999 * 233.67548 * 8 7 6 10 10 O 1.21588 * 119.99860 * 174.77474 * 9 8 7 11 11 N 1.34773 * 119.99805 * 354.77405 * 9 8 7 12 12 C 1.46503 * 120.00018 * 184.97803 * 11 9 8 13 13 C 1.53000 * 109.47236 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47270 * 300.00315 * 13 12 11 15 15 C 1.52998 * 109.47036 * 60.00291 * 13 12 11 16 16 C 1.50698 * 109.46928 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00510 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99848 * 180.02562 * 16 13 12 19 19 N 1.31518 * 120.00012 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99824 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47366 * 59.99808 * 20 18 16 22 22 H 1.48503 * 109.46944 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47352 * 299.99580 * 20 18 16 24 24 C 1.47201 * 118.55840 * 53.53732 * 8 7 6 25 25 H 1.09006 * 109.46901 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47500 * 300.00054 * 1 2 3 27 27 H 1.09001 * 109.47019 * 60.00165 * 1 2 3 28 28 H 1.08994 * 109.47231 * 239.99886 * 2 1 3 29 29 H 1.09001 * 109.47276 * 119.99350 * 2 1 3 30 30 H 1.09001 * 109.45388 * 58.66596 * 5 3 2 31 31 H 1.08993 * 109.46327 * 298.70874 * 5 3 2 32 32 H 1.09008 * 109.50250 * 301.41508 * 6 5 3 33 33 H 1.09004 * 109.52800 * 181.33800 * 6 5 3 34 34 H 1.09008 * 109.58273 * 65.15364 * 7 6 5 35 35 H 1.09004 * 109.58483 * 185.43268 * 7 6 5 36 36 H 0.97009 * 120.00436 * 4.98438 * 11 9 8 37 37 H 1.08997 * 109.47393 * 300.00233 * 12 11 9 38 38 H 1.09000 * 109.46681 * 60.00213 * 12 11 9 39 39 H 1.08997 * 109.46830 * 59.99789 * 14 13 12 40 40 H 1.09003 * 109.47284 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47104 * 300.00166 * 14 13 12 42 42 H 1.09001 * 109.47027 * 59.99628 * 15 13 12 43 43 H 1.09003 * 109.47410 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.47158 * 300.00268 * 15 13 12 45 45 H 0.96992 * 120.00014 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.53945 * 186.66968 * 24 8 7 47 47 H 1.09004 * 109.67937 * 66.36696 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 3.5652 1.4451 -0.1256 6 6 4.0736 2.8881 -0.1588 7 6 3.6951 3.5889 1.1498 8 7 2.2450 3.4674 1.3523 9 6 1.4879 4.5613 1.5688 10 8 0.2784 4.4591 1.6402 11 7 2.0714 5.7683 1.7061 12 6 1.2606 6.9392 2.0494 13 6 2.1604 8.1731 2.1427 14 6 3.2196 7.9513 3.2243 15 6 2.8479 8.4061 0.7959 16 6 1.3264 9.3774 2.4965 17 1 0.2611 9.2731 2.6408 18 6 1.9233 10.6125 2.6360 19 7 3.2205 10.7394 2.4608 20 14 0.8895 12.1051 3.0752 21 1 0.2237 11.8786 4.3831 22 1 1.7629 13.3027 3.1657 23 1 -0.1396 12.3205 2.0266 24 6 1.6384 2.1268 1.3105 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8546 0.9370 -1.0455 31 1 4.0008 0.9261 0.7281 32 1 3.6193 3.4148 -0.9981 33 1 5.1577 2.8900 -0.2721 34 1 4.2208 3.1190 1.9812 35 1 3.9692 4.6423 1.0927 36 1 3.0284 5.8619 1.5775 37 1 0.5063 7.0975 1.2786 38 1 0.7705 6.7730 3.0087 39 1 3.8228 7.0802 2.9688 40 1 3.8609 8.8302 3.2905 41 1 2.7298 7.7853 4.1839 42 1 2.0933 8.5640 0.0253 43 1 3.4886 9.2854 0.8622 44 1 3.4511 7.5349 0.5404 45 1 3.6404 11.6082 2.5593 46 1 0.5532 2.2161 1.3585 47 1 1.9942 1.5365 2.1549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -51.195956 kcal Electronic energy + Delta-G solvation = -23470.217567 eV Core-core repulsion = 20266.163429 eV Total energy + Delta-G solvation = -3204.054138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18777 -37.99389 -36.26295 -34.65564 -33.12447 -32.20761 -30.77551 -29.27516 -26.04347 -25.70319 -25.32104 -24.40545 -23.96911 -21.59522 -20.45714 -19.36480 -18.84469 -17.82589 -16.03572 -15.80016 -15.42254 -14.89540 -14.74648 -14.52641 -14.16931 -13.79929 -13.58589 -13.48803 -13.31066 -12.93239 -12.78486 -12.55938 -12.23736 -12.03543 -11.77854 -11.37518 -11.27443 -11.16557 -11.15396 -10.85070 -10.79233 -10.70784 -10.64718 -10.38472 -10.35414 -10.17619 -9.66230 -9.60370 -9.26794 -8.77497 -8.61299 -8.37366 -8.06671 -5.99984 -4.09812 3.00486 3.31935 3.35879 3.40075 3.64466 4.29827 4.42827 4.57216 4.63929 4.69683 4.87686 5.03832 5.17338 5.21903 5.26704 5.30599 5.43781 5.49254 5.65081 5.71890 5.75011 5.77269 5.80438 5.91164 5.94342 6.03388 6.15729 6.25017 6.28516 6.40284 6.53243 6.68282 6.83710 6.84525 6.95677 7.05874 7.14461 7.32096 7.42873 7.58213 7.71830 8.03374 8.14713 8.40492 8.47902 8.89900 9.08518 9.55748 11.01509 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.003581 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.832302 B = 7817.539570 C = 8324.403143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.105 4.105 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.135 4.135 7 C 0.111 3.889 8 N -0.636 5.636 9 C 0.702 3.298 10 O -0.599 6.599 11 N -0.734 5.734 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.135 3.865 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.093 0.907 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -18.567 -4.736 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.174 4.174 7 C -0.013 4.013 8 N -0.374 5.374 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.390 5.390 12 C 0.026 3.974 13 C 0.056 3.944 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.012 3.988 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.015 -18.429 -4.636 19.241 hybrid contribution 0.033 0.889 0.129 0.899 sum 3.048 -17.541 -4.507 18.365 Atomic orbital electron populations 1.21838 0.95670 1.01418 1.02474 1.21502 0.96125 0.95669 1.01948 1.21601 0.95820 0.96108 0.98897 0.90724 1.21551 0.95125 0.96411 1.01900 1.21921 1.01053 0.96317 0.98070 1.21581 0.81275 1.01133 0.97291 1.47315 1.07121 1.05934 1.77045 1.15975 0.85118 0.80607 0.77979 1.90858 1.12193 1.85284 1.59480 1.45681 1.11924 1.07035 1.74379 1.21583 0.93678 0.83264 0.98862 1.18353 0.92570 0.90590 0.92929 1.21815 0.99376 0.99605 0.97877 1.21813 0.99608 1.00154 0.97087 1.20960 0.94076 0.91915 1.47460 0.92447 1.24878 0.94953 0.98676 0.94985 1.69794 1.09046 1.23980 1.49747 0.86627 0.80130 0.81980 0.79082 1.20280 1.21360 1.20271 1.21511 0.99998 0.81307 0.95993 0.92913 0.92174 0.92657 0.91898 0.91912 0.91873 0.91837 0.91406 0.90757 0.91624 0.90310 0.76987 0.92950 0.93071 0.97698 0.89636 0.95447 0.95448 0.89627 0.97718 0.92981 0.88825 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.11 -0.93 5.40 -26.73 -0.14 -1.07 16 3 C -0.10 -1.04 2.34 -90.50 -0.21 -1.25 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.11 -0.96 5.17 -26.69 -0.14 -1.09 16 6 C -0.14 -1.27 6.08 -26.62 -0.16 -1.43 16 7 C 0.11 1.27 6.38 -3.71 -0.02 1.24 16 8 N -0.64 -9.25 2.98 -178.27 -0.53 -9.78 16 9 C 0.70 13.32 8.30 -86.92 -0.72 12.60 16 10 O -0.60 -13.53 15.79 5.29 0.08 -13.45 16 11 N -0.73 -13.94 4.87 -65.22 -0.32 -14.26 16 12 C 0.15 3.31 4.51 -4.04 -0.02 3.29 16 13 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 16 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.14 1.68 5.35 -3.56 -0.02 1.66 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.08 0.94 5.64 -51.93 -0.29 0.64 16 36 H 0.39 6.76 3.65 -40.82 -0.15 6.61 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 40 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.09 1.35 5.74 -51.93 -0.30 1.06 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -29.15 352.65 -9.19 -38.35 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.31 Total: 4.33 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.92 Total: -3.12 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.33 Total: -47.28 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.15 -9.19 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.850 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds