Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08995 * 109.49436 * 305.06069 * 3 2 1 5 5 C 1.53041 * 109.49828 * 184.99524 * 3 2 1 6 6 C 1.53031 * 109.53895 * 178.68118 * 5 3 2 7 7 C 1.53192 * 109.31310 * 61.36520 * 6 5 3 8 8 N 1.46920 * 108.89365 * 305.29643 * 7 6 5 9 9 C 1.34782 * 120.62999 * 233.67548 * 8 7 6 10 10 O 1.21588 * 119.99860 * 174.77474 * 9 8 7 11 11 N 1.34773 * 119.99805 * 354.77405 * 9 8 7 12 12 C 1.46503 * 120.00018 * 184.97803 * 11 9 8 13 13 C 1.53000 * 109.47236 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47270 * 300.00315 * 13 12 11 15 15 C 1.52998 * 109.47036 * 60.00291 * 13 12 11 16 16 C 1.50698 * 109.46928 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00510 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99848 * 180.02562 * 16 13 12 19 19 N 1.31518 * 120.00012 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99824 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47366 * 59.99808 * 20 18 16 22 22 H 1.48503 * 109.46944 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47352 * 299.99580 * 20 18 16 24 24 C 1.47201 * 118.55840 * 53.53732 * 8 7 6 25 25 H 1.09006 * 109.46901 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47500 * 300.00054 * 1 2 3 27 27 H 1.09001 * 109.47019 * 60.00165 * 1 2 3 28 28 H 1.08994 * 109.47231 * 239.99886 * 2 1 3 29 29 H 1.09001 * 109.47276 * 119.99350 * 2 1 3 30 30 H 1.09001 * 109.45388 * 58.66596 * 5 3 2 31 31 H 1.08993 * 109.46327 * 298.70874 * 5 3 2 32 32 H 1.09008 * 109.50250 * 301.41508 * 6 5 3 33 33 H 1.09004 * 109.52800 * 181.33800 * 6 5 3 34 34 H 1.09008 * 109.58273 * 65.15364 * 7 6 5 35 35 H 1.09004 * 109.58483 * 185.43268 * 7 6 5 36 36 H 0.97009 * 120.00436 * 4.98438 * 11 9 8 37 37 H 1.08997 * 109.47393 * 300.00233 * 12 11 9 38 38 H 1.09000 * 109.46681 * 60.00213 * 12 11 9 39 39 H 1.08997 * 109.46830 * 59.99789 * 14 13 12 40 40 H 1.09003 * 109.47284 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47104 * 300.00166 * 14 13 12 42 42 H 1.09001 * 109.47027 * 59.99628 * 15 13 12 43 43 H 1.09003 * 109.47410 * 179.97438 * 15 13 12 44 44 H 1.08997 * 109.47158 * 300.00268 * 15 13 12 45 45 H 0.96992 * 120.00014 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.53945 * 186.66968 * 24 8 7 47 47 H 1.09004 * 109.67937 * 66.36696 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 3.5652 1.4451 -0.1256 6 6 4.0736 2.8881 -0.1588 7 6 3.6951 3.5889 1.1498 8 7 2.2450 3.4674 1.3523 9 6 1.4879 4.5613 1.5688 10 8 0.2784 4.4591 1.6402 11 7 2.0714 5.7683 1.7061 12 6 1.2606 6.9392 2.0494 13 6 2.1604 8.1731 2.1427 14 6 3.2196 7.9513 3.2243 15 6 2.8479 8.4061 0.7959 16 6 1.3264 9.3774 2.4965 17 1 0.2611 9.2731 2.6408 18 6 1.9233 10.6125 2.6360 19 7 3.2205 10.7394 2.4608 20 14 0.8895 12.1051 3.0752 21 1 0.2237 11.8786 4.3831 22 1 1.7629 13.3027 3.1657 23 1 -0.1396 12.3205 2.0266 24 6 1.6384 2.1268 1.3105 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 3.8546 0.9370 -1.0455 31 1 4.0008 0.9261 0.7281 32 1 3.6193 3.4148 -0.9981 33 1 5.1577 2.8900 -0.2721 34 1 4.2208 3.1190 1.9812 35 1 3.9692 4.6423 1.0927 36 1 3.0284 5.8619 1.5775 37 1 0.5063 7.0975 1.2786 38 1 0.7705 6.7730 3.0087 39 1 3.8228 7.0802 2.9688 40 1 3.8609 8.8302 3.2905 41 1 2.7298 7.7853 4.1839 42 1 2.0933 8.5640 0.0253 43 1 3.4886 9.2854 0.8622 44 1 3.4511 7.5349 0.5404 45 1 3.6404 11.6082 2.5593 46 1 0.5532 2.2161 1.3585 47 1 1.9942 1.5365 2.1549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459260413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = -66.701805 kcal Electronic energy + Delta-G solvation = -23470.889951 eV Core-core repulsion = 20266.163429 eV Total energy + Delta-G solvation = -3204.726522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48803 -39.20007 -37.99921 -35.72219 -34.79971 -33.19237 -32.56517 -30.15370 -27.59618 -27.57769 -27.13383 -25.59187 -25.04796 -22.46117 -21.48202 -20.63806 -20.56684 -19.16338 -17.82563 -17.24258 -16.73967 -16.59157 -15.96219 -15.54454 -15.38392 -15.04284 -14.86247 -14.64848 -14.48308 -14.30670 -14.04447 -13.97201 -13.61783 -13.20356 -13.11942 -12.93411 -12.68436 -12.62084 -12.54403 -12.26053 -12.15982 -12.04890 -11.89123 -11.56854 -11.50004 -11.48889 -11.30381 -11.16440 -11.02373 -10.72264 -10.40039 -10.10466 -9.40036 -8.02331 -6.18097 1.44792 1.45435 1.52266 1.72256 2.15690 2.46159 3.04990 3.21174 3.73926 3.85283 3.91717 4.08895 4.23976 4.37861 4.41914 4.44884 4.49723 4.51833 4.64215 4.69291 4.72476 4.83585 4.90237 4.96637 5.02911 5.03765 5.05739 5.08744 5.13225 5.18380 5.20162 5.20759 5.33645 5.37179 5.42744 5.53022 5.60112 5.66065 5.66289 5.67647 5.99209 6.13832 6.20718 6.43341 6.85470 7.03014 7.49449 7.59748 8.96730 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.003581 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.832302 B = 7817.539570 C = 8324.403143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.098 4.098 4 H 0.053 0.947 5 C -0.108 4.108 6 C -0.131 4.131 7 C 0.103 3.897 8 N -0.628 5.628 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.727 5.727 12 C 0.167 3.833 13 C 0.053 3.947 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.531 4.531 17 H 0.044 0.956 18 C 0.030 3.970 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.277 1.277 24 C 0.130 3.870 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -20.333 -5.057 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.118 4.118 4 H 0.071 0.929 5 C -0.145 4.145 6 C -0.169 4.169 7 C -0.020 4.020 8 N -0.366 5.366 9 C 0.397 3.603 10 O -0.525 6.525 11 N -0.385 5.385 12 C 0.042 3.958 13 C 0.052 3.948 14 C -0.176 4.176 15 C -0.176 4.176 16 C -0.570 4.570 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.203 1.203 24 C 0.008 3.992 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.887 -20.233 -4.971 21.400 hybrid contribution -0.532 1.379 0.222 1.494 sum 4.354 -18.854 -4.749 19.925 Atomic orbital electron populations 1.21851 0.96547 1.01948 1.01244 1.21479 0.95304 0.94467 1.03344 1.21542 0.97255 0.96677 0.96324 0.92866 1.21554 0.93438 0.96045 1.03489 1.21915 1.02552 0.96436 0.96020 1.21894 0.79063 1.01546 0.99469 1.47413 1.08407 1.05312 1.75424 1.16164 0.84863 0.81382 0.77891 1.90826 1.14330 1.86015 1.61360 1.45395 1.12044 1.06418 1.74630 1.21135 0.93273 0.84055 0.97326 1.18347 0.92704 0.90181 0.93553 1.21646 0.98876 0.99884 0.97152 1.21647 0.99119 1.00476 0.96321 1.21243 0.93955 0.93573 1.48229 0.93773 1.25447 0.95956 1.00673 0.94955 1.69892 1.09746 1.24397 1.49715 0.85806 0.78882 0.79435 0.78621 1.20240 1.20668 1.20304 1.21704 0.98547 0.80577 0.98394 0.91466 0.93704 0.93673 0.90309 0.90555 0.90179 0.90246 0.92968 0.88157 0.89361 0.90841 0.75750 0.94949 0.94737 0.94729 0.91695 0.96328 0.96496 0.91649 0.94821 0.92940 0.91556 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.67 71.98 0.70 -1.91 16 2 C -0.11 -1.48 5.40 30.60 0.17 -1.32 16 3 C -0.10 -1.77 2.34 -10.71 -0.03 -1.79 16 4 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.11 -1.44 5.17 30.62 0.16 -1.28 16 6 C -0.13 -2.04 6.08 30.67 0.19 -1.86 16 7 C 0.10 2.07 6.38 86.36 0.55 2.62 16 8 N -0.63 -17.61 2.98 -836.18 -2.50 -20.11 16 9 C 0.70 26.54 8.30 179.05 1.49 28.02 16 10 O -0.64 -29.99 15.79 -3.99 -0.06 -30.06 16 11 N -0.73 -27.44 4.87 -478.53 -2.33 -29.77 16 12 C 0.17 7.54 4.51 86.38 0.39 7.93 16 13 C 0.05 2.51 0.50 -52.93 -0.03 2.49 16 14 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 15 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 16 C -0.53 -28.70 8.01 25.60 0.21 -28.50 16 17 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 18 C 0.03 1.57 5.15 84.66 0.44 2.01 16 19 N -0.90 -48.15 9.35 21.45 0.20 -47.95 16 20 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.13 3.11 5.35 86.31 0.46 3.57 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.04 0.86 6.70 -2.39 -0.02 0.85 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.07 1.56 5.64 -2.38 -0.01 1.54 16 36 H 0.40 13.28 3.65 -92.70 -0.34 12.95 16 37 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 40 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 44 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 45 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 46 H 0.07 1.97 5.74 -2.39 -0.01 1.95 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.09 352.65 3.78 -60.32 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.59 Total: 22.10 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.85 Total: 0.46 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -4.62 Total: -97.83 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.06 Total: -30.06 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -64.09 3.78 -60.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.385 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds