Wall clock time and date at job start Tue Mar 31 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 H 1.09005 * 109.49445 * 54.93898 * 3 2 1 5 5 C 1.53042 * 109.49715 * 174.99881 * 3 2 1 6 6 C 1.53036 * 109.52585 * 181.35768 * 5 3 2 7 7 C 1.53192 * 109.31272 * 298.61697 * 6 5 3 8 8 N 1.46927 * 108.76647 * 54.65523 * 7 6 5 9 9 C 1.34775 * 120.63186 * 126.36015 * 8 7 6 10 10 O 1.21587 * 120.00266 * 174.98165 * 9 8 7 11 11 N 1.34785 * 120.00007 * 354.99030 * 9 8 7 12 12 C 1.46497 * 119.99846 * 185.07235 * 11 9 8 13 13 C 1.53000 * 109.46904 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46856 * 299.99782 * 13 12 11 15 15 C 1.52994 * 109.47633 * 59.99552 * 13 12 11 16 16 C 1.50695 * 109.47091 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00120 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00036 * 180.02562 * 16 13 12 19 19 N 1.31509 * 119.99840 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00094 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47540 * 119.99576 * 20 18 16 23 23 H 1.48494 * 109.46960 * 239.99912 * 20 18 16 24 24 C 1.46921 * 118.73807 * 306.38642 * 8 7 6 25 25 H 1.09005 * 109.46996 * 300.00270 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.99685 * 1 2 3 27 27 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46872 * 239.99908 * 2 1 3 29 29 H 1.09004 * 109.47209 * 120.00315 * 2 1 3 30 30 H 1.09000 * 109.45917 * 301.37433 * 5 3 2 31 31 H 1.08994 * 109.45851 * 61.34855 * 5 3 2 32 32 H 1.09000 * 109.49736 * 58.58057 * 6 5 3 33 33 H 1.09005 * 109.49837 * 178.67648 * 6 5 3 34 34 H 1.08999 * 109.59707 * 294.86856 * 7 6 5 35 35 H 1.09004 * 109.70343 * 174.50504 * 7 6 5 36 36 H 0.96994 * 119.99865 * 5.06384 * 11 9 8 37 37 H 1.09001 * 109.47322 * 299.99708 * 12 11 9 38 38 H 1.09001 * 109.47500 * 59.99500 * 12 11 9 39 39 H 1.08995 * 109.47558 * 59.99853 * 14 13 12 40 40 H 1.09007 * 109.47127 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46935 * 300.00002 * 14 13 12 42 42 H 1.09003 * 109.46912 * 59.99830 * 15 13 12 43 43 H 1.08995 * 109.47617 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47338 * 300.00525 * 15 13 12 45 45 H 0.97006 * 120.00185 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58777 * 293.81965 * 24 8 7 47 47 H 1.08999 * 109.58785 * 173.39398 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 0.8411 5 6 3.5653 1.4449 0.1258 6 6 4.0734 2.8881 0.1599 7 6 3.6952 3.5894 -1.1485 8 7 2.2451 3.4651 -1.3495 9 6 1.4856 4.5574 -1.5653 10 8 0.3032 4.4349 -1.8207 11 7 2.0369 5.7855 -1.4983 12 6 1.1916 6.9755 -1.6225 13 6 2.0591 8.2310 -1.5117 14 6 2.7640 8.2455 -0.1538 15 6 3.1043 8.2290 -2.6289 16 6 1.1895 9.4552 -1.6388 17 1 0.1247 9.3485 -1.7844 18 6 1.7534 10.7115 -1.5701 19 7 3.0501 10.8415 -1.3932 20 14 0.6757 12.2291 -1.7283 21 1 -0.7375 11.8147 -1.9199 22 1 0.7890 13.0477 -0.4946 23 1 1.1186 13.0310 -2.8970 24 6 1.6386 2.1275 -1.3100 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8546 0.9362 1.0453 31 1 4.0009 0.9268 -0.7285 32 1 3.6188 3.4141 0.9994 33 1 5.1575 2.8895 0.2731 34 1 4.2209 3.1201 -1.9801 35 1 3.9673 4.6435 -1.0925 36 1 2.9932 5.8813 -1.3678 37 1 0.6890 6.9650 -2.5896 38 1 0.4472 6.9772 -0.8263 39 1 3.3929 7.3601 -0.0613 40 1 3.3817 9.1402 -0.0747 41 1 2.0194 8.2470 0.6422 42 1 2.6021 8.2186 -3.5963 43 1 3.7226 9.1232 -2.5497 44 1 3.7332 7.3436 -2.5366 45 1 3.4469 11.7253 -1.3446 46 1 1.9965 1.5389 -2.1547 47 1 0.5533 2.2168 -1.3580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:28 Heat of formation + Delta-G solvation = -50.933127 kcal Electronic energy + Delta-G solvation = -23505.121123 eV Core-core repulsion = 20301.078382 eV Total energy + Delta-G solvation = -3204.042741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20649 -37.99442 -36.26926 -34.65698 -33.12801 -32.20774 -30.78155 -29.27857 -26.04089 -25.70519 -25.32352 -24.40878 -23.97121 -21.59229 -20.45712 -19.35530 -18.85188 -17.84243 -16.04497 -15.79456 -15.36027 -14.97560 -14.74753 -14.54332 -14.16234 -13.79286 -13.57920 -13.44166 -13.35802 -12.94024 -12.78246 -12.52919 -12.24331 -12.04297 -11.77826 -11.37686 -11.27276 -11.18011 -11.15371 -10.87069 -10.80458 -10.65334 -10.63391 -10.38302 -10.36338 -10.17753 -9.66668 -9.60725 -9.26846 -8.76047 -8.61395 -8.38317 -8.06562 -6.00426 -4.10021 3.00846 3.28606 3.37156 3.42442 3.64650 4.29171 4.42738 4.57463 4.65069 4.69075 4.87943 5.04056 5.17520 5.21909 5.26494 5.30819 5.44141 5.49416 5.64597 5.72214 5.75617 5.77836 5.80642 5.91586 5.94676 6.03900 6.15707 6.24798 6.28697 6.40157 6.53134 6.69168 6.83644 6.84367 6.95586 7.05689 7.14411 7.31874 7.42760 7.58043 7.71899 8.03164 8.14666 8.40337 8.47755 8.90189 9.08370 9.55663 11.01101 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.003635 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.017076 B = 7700.990996 C = 8162.121327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.105 4.105 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.135 4.135 7 C 0.111 3.889 8 N -0.635 5.635 9 C 0.701 3.299 10 O -0.599 6.599 11 N -0.734 5.734 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.136 3.864 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.259 0.741 46 H 0.058 0.942 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -18.730 3.079 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.125 4.125 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.174 4.174 7 C -0.013 4.013 8 N -0.374 5.374 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.390 5.390 12 C 0.026 3.974 13 C 0.055 3.945 14 C -0.186 4.186 15 C -0.187 4.187 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.012 3.988 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.023 0.977 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.269 -18.608 2.906 19.115 hybrid contribution 0.035 0.914 0.029 0.915 sum 3.305 -17.694 2.935 18.238 Atomic orbital electron populations 1.21839 0.95679 1.01438 1.02463 1.21499 0.96117 0.95663 1.01952 1.21613 0.95862 0.96119 0.98886 0.90729 1.21551 0.95103 0.96426 1.01892 1.21922 1.01066 0.96297 0.98103 1.21590 0.81202 1.01149 0.97309 1.47254 1.07135 1.05964 1.77026 1.15987 0.84817 0.80702 0.78211 1.90859 1.14715 1.85602 1.56625 1.45682 1.11787 1.04573 1.77003 1.21581 0.92962 0.82672 1.00168 1.18365 0.92822 0.90547 0.92783 1.21812 0.99331 0.99973 0.97523 1.21812 0.99116 0.99955 0.97797 1.21035 0.93863 0.89865 1.49465 0.92342 1.24882 0.94995 0.98836 0.94845 1.69815 1.09823 1.22818 1.50080 0.86516 0.80891 0.82926 0.77559 1.19733 1.21088 1.21089 1.21460 0.99933 0.81408 0.95959 0.92660 0.92170 0.92902 0.91914 0.91888 0.91857 0.91862 0.91314 0.90779 0.91647 0.90263 0.76982 0.92927 0.93102 0.97707 0.89638 0.95472 0.95425 0.89627 0.97711 0.93106 0.92351 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.11 -0.93 5.41 -26.73 -0.14 -1.07 16 3 C -0.11 -1.04 2.33 -90.50 -0.21 -1.26 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 6 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 7 C 0.11 1.27 6.43 -3.71 -0.02 1.24 16 8 N -0.64 -9.24 2.97 -178.50 -0.53 -9.77 16 9 C 0.70 13.31 8.30 -86.91 -0.72 12.59 16 10 O -0.60 -13.53 15.79 5.29 0.08 -13.45 16 11 N -0.73 -13.92 4.87 -65.22 -0.32 -14.24 16 12 C 0.15 3.30 4.51 -4.04 -0.02 3.29 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 16 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.14 1.69 5.31 -3.72 -0.02 1.67 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.57 6.70 -51.93 -0.35 0.23 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.94 5.56 -51.93 -0.29 0.65 16 36 H 0.39 6.75 3.62 -40.82 -0.15 6.60 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.35 5.76 -51.93 -0.30 1.05 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -29.16 352.56 -9.19 -38.35 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.31 Total: 4.27 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.92 Total: -3.11 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.33 Total: -47.21 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.16 -9.19 -38.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.583 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds