Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 H 1.09005 * 109.49445 * 54.93898 * 3 2 1 5 5 C 1.53042 * 109.49715 * 174.99881 * 3 2 1 6 6 C 1.53036 * 109.52585 * 181.35768 * 5 3 2 7 7 C 1.53192 * 109.31272 * 298.61697 * 6 5 3 8 8 N 1.46927 * 108.76647 * 54.65523 * 7 6 5 9 9 C 1.34775 * 120.63186 * 126.36015 * 8 7 6 10 10 O 1.21587 * 120.00266 * 174.98165 * 9 8 7 11 11 N 1.34785 * 120.00007 * 354.99030 * 9 8 7 12 12 C 1.46497 * 119.99846 * 185.07235 * 11 9 8 13 13 C 1.53000 * 109.46904 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46856 * 299.99782 * 13 12 11 15 15 C 1.52994 * 109.47633 * 59.99552 * 13 12 11 16 16 C 1.50695 * 109.47091 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00120 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00036 * 180.02562 * 16 13 12 19 19 N 1.31509 * 119.99840 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00094 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47057 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47540 * 119.99576 * 20 18 16 23 23 H 1.48494 * 109.46960 * 239.99912 * 20 18 16 24 24 C 1.46921 * 118.73807 * 306.38642 * 8 7 6 25 25 H 1.09005 * 109.46996 * 300.00270 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.99685 * 1 2 3 27 27 H 1.08995 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46872 * 239.99908 * 2 1 3 29 29 H 1.09004 * 109.47209 * 120.00315 * 2 1 3 30 30 H 1.09000 * 109.45917 * 301.37433 * 5 3 2 31 31 H 1.08994 * 109.45851 * 61.34855 * 5 3 2 32 32 H 1.09000 * 109.49736 * 58.58057 * 6 5 3 33 33 H 1.09005 * 109.49837 * 178.67648 * 6 5 3 34 34 H 1.08999 * 109.59707 * 294.86856 * 7 6 5 35 35 H 1.09004 * 109.70343 * 174.50504 * 7 6 5 36 36 H 0.96994 * 119.99865 * 5.06384 * 11 9 8 37 37 H 1.09001 * 109.47322 * 299.99708 * 12 11 9 38 38 H 1.09001 * 109.47500 * 59.99500 * 12 11 9 39 39 H 1.08995 * 109.47558 * 59.99853 * 14 13 12 40 40 H 1.09007 * 109.47127 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46935 * 300.00002 * 14 13 12 42 42 H 1.09003 * 109.46912 * 59.99830 * 15 13 12 43 43 H 1.08995 * 109.47617 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47338 * 300.00525 * 15 13 12 45 45 H 0.97006 * 120.00185 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.58777 * 293.81965 * 24 8 7 47 47 H 1.08999 * 109.58785 * 173.39398 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 0.8411 5 6 3.5653 1.4449 0.1258 6 6 4.0734 2.8881 0.1599 7 6 3.6952 3.5894 -1.1485 8 7 2.2451 3.4651 -1.3495 9 6 1.4856 4.5574 -1.5653 10 8 0.3032 4.4349 -1.8207 11 7 2.0369 5.7855 -1.4983 12 6 1.1916 6.9755 -1.6225 13 6 2.0591 8.2310 -1.5117 14 6 2.7640 8.2455 -0.1538 15 6 3.1043 8.2290 -2.6289 16 6 1.1895 9.4552 -1.6388 17 1 0.1247 9.3485 -1.7844 18 6 1.7534 10.7115 -1.5701 19 7 3.0501 10.8415 -1.3932 20 14 0.6757 12.2291 -1.7283 21 1 -0.7375 11.8147 -1.9199 22 1 0.7890 13.0477 -0.4946 23 1 1.1186 13.0310 -2.8970 24 6 1.6386 2.1275 -1.3100 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8546 0.9362 1.0453 31 1 4.0009 0.9268 -0.7285 32 1 3.6188 3.4141 0.9994 33 1 5.1575 2.8895 0.2731 34 1 4.2209 3.1201 -1.9801 35 1 3.9673 4.6435 -1.0925 36 1 2.9932 5.8813 -1.3678 37 1 0.6890 6.9650 -2.5896 38 1 0.4472 6.9772 -0.8263 39 1 3.3929 7.3601 -0.0613 40 1 3.3817 9.1402 -0.0747 41 1 2.0194 8.2470 0.6422 42 1 2.6021 8.2186 -3.5963 43 1 3.7226 9.1232 -2.5497 44 1 3.7332 7.3436 -2.5366 45 1 3.4469 11.7253 -1.3446 46 1 1.9965 1.5389 -2.1547 47 1 0.5533 2.2168 -1.3580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459260414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = -66.434351 kcal Electronic energy + Delta-G solvation = -23505.793306 eV Core-core repulsion = 20301.078382 eV Total energy + Delta-G solvation = -3204.714925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50537 -39.20391 -38.00563 -35.72328 -34.80414 -33.18937 -32.57437 -30.15964 -27.59629 -27.57872 -27.13593 -25.59146 -25.05291 -22.45968 -21.48759 -20.64198 -20.55235 -19.18538 -17.83323 -17.25105 -16.65896 -16.63007 -16.00087 -15.57633 -15.37964 -15.03048 -14.87623 -14.65340 -14.46717 -14.31527 -14.05687 -13.93746 -13.62318 -13.20780 -13.13425 -12.93926 -12.70148 -12.57073 -12.54484 -12.26304 -12.16267 -12.04966 -11.89717 -11.56637 -11.50742 -11.48888 -11.30915 -11.16595 -11.02529 -10.70968 -10.40668 -10.10191 -9.40002 -8.02665 -6.18175 1.41622 1.45522 1.55124 1.72307 2.16186 2.46021 3.04193 3.20940 3.74073 3.86259 3.91075 4.08934 4.24049 4.37378 4.42004 4.44818 4.49726 4.51645 4.64216 4.69234 4.72591 4.83596 4.90116 4.96628 5.03126 5.03798 5.05790 5.08780 5.13355 5.18333 5.20188 5.21072 5.33825 5.37172 5.42730 5.52790 5.60338 5.66053 5.66672 5.68091 5.98982 6.13746 6.20672 6.43361 6.85699 7.02898 7.49472 7.59619 8.96707 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.003635 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.017076 B = 7700.990996 C = 8162.121327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.099 4.099 4 H 0.053 0.947 5 C -0.108 4.108 6 C -0.131 4.131 7 C 0.103 3.897 8 N -0.628 5.628 9 C 0.695 3.305 10 O -0.642 6.642 11 N -0.728 5.728 12 C 0.167 3.833 13 C 0.052 3.948 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.529 4.529 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.131 3.869 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.403 0.597 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.077 0.923 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.864 -20.475 3.421 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.118 4.118 4 H 0.072 0.928 5 C -0.145 4.145 6 C -0.170 4.170 7 C -0.019 4.019 8 N -0.365 5.365 9 C 0.397 3.603 10 O -0.525 6.525 11 N -0.385 5.385 12 C 0.042 3.958 13 C 0.052 3.948 14 C -0.175 4.175 15 C -0.176 4.176 16 C -0.567 4.567 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.538 5.538 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.008 3.992 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.163 -20.390 3.264 21.285 hybrid contribution -0.533 1.398 -0.082 1.499 sum 4.630 -18.991 3.182 19.805 Atomic orbital electron populations 1.21852 0.96544 1.01967 1.01244 1.21477 0.95307 0.94464 1.03338 1.21553 0.97286 0.96686 0.96315 0.92820 1.21554 0.93433 0.96050 1.03473 1.21916 1.02554 0.96426 0.96064 1.21902 0.78988 1.01550 0.99480 1.47352 1.08405 1.05341 1.75405 1.16175 0.84591 0.81474 0.78094 1.90826 1.16843 1.86309 1.58535 1.45395 1.11872 1.03915 1.77325 1.21132 0.92688 0.83555 0.98411 1.18357 0.92872 0.90081 0.93534 1.21641 0.98954 1.00296 0.96606 1.21647 0.98741 1.00293 0.96915 1.21288 0.93691 0.91553 1.50198 0.93818 1.25447 0.96098 1.00893 0.94648 1.69907 1.10537 1.23336 1.49971 0.85689 0.79271 0.80122 0.77615 1.20106 1.20606 1.20645 1.21646 0.98483 0.80689 0.98336 0.93653 0.93699 0.91465 0.90568 0.90308 0.90187 0.90260 0.92921 0.88197 0.89336 0.90798 0.75743 0.94837 0.94881 0.94783 0.91694 0.96405 0.96389 0.91662 0.94785 0.92971 0.90467 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.67 71.98 0.70 -1.91 16 2 C -0.11 -1.49 5.41 30.59 0.17 -1.32 16 3 C -0.10 -1.78 2.33 -10.72 -0.03 -1.80 16 4 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 5 C -0.11 -1.45 5.17 30.62 0.16 -1.29 16 6 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 7 C 0.10 2.07 6.43 86.36 0.56 2.63 16 8 N -0.63 -17.59 2.97 -836.92 -2.49 -20.07 16 9 C 0.70 26.51 8.30 179.05 1.49 27.99 16 10 O -0.64 -29.97 15.79 -3.99 -0.06 -30.04 16 11 N -0.73 -27.43 4.87 -478.53 -2.33 -29.77 16 12 C 0.17 7.54 4.51 86.38 0.39 7.93 16 13 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 14 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 15 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 16 C -0.53 -28.54 8.01 25.60 0.21 -28.34 16 17 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 18 C 0.03 1.54 5.15 84.66 0.44 1.97 16 19 N -0.90 -48.07 9.35 21.45 0.20 -47.87 16 20 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 C 0.13 3.14 5.31 86.36 0.46 3.60 16 25 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.04 0.86 6.70 -2.38 -0.02 0.85 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.57 5.56 -2.39 -0.01 1.55 16 36 H 0.40 13.28 3.62 -92.71 -0.34 12.95 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 40 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 44 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 45 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.97 5.76 -2.39 -0.01 1.95 16 Total: -1.00 -64.09 352.56 3.79 -60.30 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.60 Total: 21.86 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.85 Total: 0.54 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.62 Total: -97.71 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.04 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.09 3.79 -60.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds