Wall clock time and date at job start Tue Mar 31 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47374 * 2 1 4 4 H 1.09006 * 109.62327 * 60.85833 * 3 2 1 5 5 C 1.53235 * 109.63189 * 300.47445 * 3 2 1 6 6 N 1.46900 * 109.34209 * 186.45749 * 5 3 2 7 7 C 1.46900 * 111.00151 * 187.24600 * 6 5 3 8 8 C 1.52999 * 109.46618 * 70.60950 * 7 6 5 9 9 C 1.50704 * 109.47005 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00077 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00022 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00005 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00112 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47122 * 89.99996 * 13 11 9 15 15 H 1.48499 * 109.47501 * 210.00256 * 13 11 9 16 16 H 1.48502 * 109.47237 * 330.00190 * 13 11 9 17 17 C 1.46903 * 111.26520 * 63.10033 * 6 5 3 18 18 H 1.09003 * 109.49620 * 56.86127 * 17 6 5 19 19 C 1.53011 * 109.48826 * 176.93686 * 17 6 5 20 20 C 1.53005 * 109.46843 * 180.79105 * 19 17 6 21 21 C 1.53235 * 109.34302 * 296.89323 * 17 6 5 22 22 N 1.47077 * 109.63043 * 181.23773 * 3 2 1 23 23 C 1.34778 * 120.88063 * 350.90447 * 22 3 2 24 24 C 1.50702 * 119.99608 * 185.82285 * 23 22 3 25 25 O 1.21276 * 120.00085 * 5.81628 * 23 22 3 26 26 H 1.09001 * 109.47551 * 175.20306 * 1 2 3 27 27 H 1.08995 * 109.47152 * 295.20013 * 1 2 3 28 28 H 1.09002 * 109.47139 * 55.20195 * 1 2 3 29 29 H 1.08998 * 109.46889 * 120.00917 * 2 1 3 30 30 H 1.09009 * 109.46974 * 240.00100 * 2 1 3 31 31 H 1.09003 * 109.48970 * 306.41288 * 5 3 2 32 32 H 1.08995 * 109.49663 * 66.47008 * 5 3 2 33 33 H 1.09004 * 109.46918 * 190.60220 * 7 6 5 34 34 H 1.08999 * 109.47219 * 310.61031 * 7 6 5 35 35 H 1.09002 * 109.47371 * 299.99454 * 8 7 6 36 36 H 1.08995 * 109.47655 * 59.99813 * 8 7 6 37 37 H 0.96998 * 120.00091 * 179.97438 * 12 11 9 38 38 H 1.08995 * 109.46879 * 300.78962 * 19 17 6 39 39 H 1.08995 * 109.47226 * 60.79226 * 19 17 6 40 40 H 1.09003 * 109.46796 * 304.79480 * 20 19 17 41 41 H 1.08997 * 109.47125 * 64.78918 * 20 19 17 42 42 H 1.08992 * 109.46966 * 184.79519 * 20 19 17 43 43 H 1.08998 * 109.63097 * 173.54197 * 21 17 6 44 44 H 1.09008 * 109.63178 * 293.93067 * 21 17 6 45 45 H 1.08999 * 109.47458 * 93.75793 * 24 23 22 46 46 H 1.09001 * 109.46495 * 213.75477 * 24 23 22 47 47 H 1.08997 * 109.47632 * 333.75380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6907 1.9542 0.8968 5 6 1.5216 2.1718 -1.2439 6 7 2.1373 3.5034 -1.3191 7 6 1.5396 4.2996 -2.3992 8 6 0.1112 4.6902 -2.0143 9 6 -0.5019 5.5076 -3.1221 10 1 0.0702 5.7269 -4.0115 11 6 -1.7931 5.9754 -3.0001 12 7 -2.3283 6.6883 -3.9671 13 14 -2.7828 5.5955 -1.4621 14 1 -2.5644 6.6656 -0.4559 15 1 -4.2257 5.5268 -1.8063 16 1 -2.3452 4.2920 -0.9012 17 6 3.5945 3.4083 -1.4796 18 1 3.8250 2.8196 -2.3676 19 6 4.1842 4.8122 -1.6299 20 6 5.6994 4.7115 -1.8168 21 6 4.1979 2.7297 -0.2453 22 7 3.5105 1.4465 -0.0299 23 6 4.2088 0.3050 0.1305 24 6 5.7121 0.3488 0.2279 25 8 3.6275 -0.7573 0.1967 26 1 -0.3634 -1.0240 -0.0859 27 1 -0.3633 0.4375 0.9298 28 1 -0.3633 0.5865 -0.8439 29 1 1.8933 -0.5140 0.8899 30 1 1.8933 -0.5139 -0.8901 31 1 1.7809 1.6003 -2.1351 32 1 0.4384 2.2747 -1.1802 33 1 2.1325 5.2005 -2.5573 34 1 1.5207 3.7113 -3.3166 35 1 -0.4817 3.7894 -1.8561 36 1 0.1301 5.2785 -1.0969 37 1 -3.2368 7.0171 -3.8814 38 1 3.7426 5.3006 -2.4985 39 1 3.9664 5.3954 -0.7352 40 1 6.1309 4.1481 -0.9894 41 1 5.9166 4.2019 -2.7556 42 1 6.1301 5.7125 -1.8385 43 1 5.2611 2.5531 -0.4076 44 1 4.0618 3.3688 0.6272 45 1 6.0072 0.3933 1.2762 46 1 6.1320 -0.5468 -0.2300 47 1 6.0844 1.2314 -0.2922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000472343859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:44 Heat of formation + Delta-G solvation = -22.896994 kcal Electronic energy + Delta-G solvation = -23994.535575 eV Core-core repulsion = 20791.708571 eV Total energy + Delta-G solvation = -3202.827003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66458 -38.37980 -35.36747 -34.87711 -33.22463 -32.48528 -30.39771 -29.65348 -28.36368 -26.75465 -24.97231 -23.91522 -22.60159 -21.30647 -20.55021 -19.74098 -19.00618 -17.00502 -16.59147 -16.30216 -15.85066 -15.32980 -14.66506 -14.58916 -14.17750 -13.91176 -13.86776 -13.64648 -13.45866 -13.10120 -12.86375 -12.62193 -12.56197 -12.36109 -12.15325 -12.02004 -11.97907 -11.63267 -11.47935 -11.26220 -10.98522 -10.80723 -10.63767 -10.56975 -10.50467 -10.15528 -9.79565 -9.63107 -9.20058 -9.06980 -8.59923 -8.53804 -7.91224 -6.05625 -4.03931 2.55625 2.91771 3.31847 3.39207 3.43659 4.07087 4.44850 4.45240 4.73912 4.79330 4.92776 4.99652 5.13060 5.14983 5.18397 5.25885 5.28842 5.31023 5.38872 5.44154 5.57006 5.58968 5.64058 5.71631 5.78479 5.83917 5.93245 5.99672 6.04397 6.13395 6.16408 6.23765 6.30213 6.33982 6.39410 6.44550 6.72453 6.76719 7.08769 7.25490 7.40204 7.54733 7.57529 7.82401 8.13912 8.51262 8.98175 9.57007 11.07715 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.005316 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.407466 B = 5266.259865 C = 6598.751675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C 0.149 3.851 4 H 0.078 0.922 5 C 0.044 3.956 6 N -0.537 5.537 7 C 0.064 3.936 8 C -0.005 4.005 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.069 3.931 12 N -0.904 5.904 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C 0.071 3.929 18 H 0.040 0.960 19 C -0.123 4.123 20 C -0.152 4.152 21 C 0.112 3.888 22 N -0.609 5.609 23 C 0.510 3.490 24 C -0.179 4.179 25 O -0.544 6.544 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.460 -9.525 9.039 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.146 4.146 3 C 0.046 3.954 4 H 0.096 0.904 5 C -0.084 4.084 6 N -0.262 5.262 7 C -0.062 4.062 8 C -0.043 4.043 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.708 3.292 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.039 4.039 18 H 0.058 0.942 19 C -0.161 4.161 20 C -0.210 4.210 21 C -0.010 4.010 22 N -0.342 5.342 23 C 0.299 3.701 24 C -0.239 4.239 25 O -0.422 6.422 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.903 -9.756 9.459 20.918 hybrid contribution -0.501 -0.303 -0.141 0.602 sum 15.402 -10.059 9.318 20.621 Atomic orbital electron populations 1.22013 0.96556 1.01612 1.02001 1.21999 0.94088 0.93916 1.04548 1.21513 0.78039 0.97200 0.98655 0.90384 1.22623 1.00887 0.88895 0.96033 1.62077 1.02009 1.14146 1.47939 1.22280 0.97913 0.96026 0.89958 1.19541 0.90957 0.96371 0.97384 1.21069 0.98892 1.32391 1.03635 0.91193 1.24985 0.97575 0.94495 0.96215 1.69914 1.15212 1.36390 1.32754 0.86766 0.79104 0.79578 0.83772 1.20246 1.21515 1.18934 1.21957 0.89538 0.96398 0.95994 0.94197 1.21698 0.94909 0.95781 1.03748 1.21830 0.95924 1.01866 1.01386 1.22110 0.96289 0.84026 0.98615 1.48352 1.07134 1.07605 1.71136 1.20725 0.90105 0.83350 0.75953 1.22049 0.92629 1.04660 1.04536 1.90745 1.70716 1.30013 1.50750 0.92703 0.92914 0.92350 0.89712 0.91230 0.94879 0.88555 0.90511 0.95580 0.96805 0.96161 0.92729 0.90349 0.90677 0.92830 0.92879 0.92364 0.89209 0.90479 0.88942 0.89147 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.69 37.16 0.36 -1.80 16 2 C -0.11 -1.52 3.89 -26.74 -0.10 -1.63 16 3 C 0.15 2.12 3.17 -67.50 -0.21 1.90 16 4 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.04 0.71 4.20 -3.70 -0.02 0.69 16 6 N -0.54 -8.76 4.44 -226.34 -1.00 -9.77 16 7 C 0.06 1.25 4.68 -3.82 -0.02 1.24 16 8 C 0.00 -0.11 4.07 -27.88 -0.11 -0.23 16 9 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 10 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 13 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 17 C 0.07 0.91 2.12 -67.58 -0.14 0.77 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 19 C -0.12 -1.43 5.07 -26.72 -0.14 -1.57 16 20 C -0.15 -1.31 9.71 37.16 0.36 -0.95 16 21 C 0.11 1.20 5.23 -3.56 -0.02 1.18 16 22 N -0.61 -7.66 3.02 -164.87 -0.50 -8.16 16 23 C 0.51 6.35 7.73 -10.98 -0.08 6.26 16 24 C -0.18 -1.43 9.89 36.01 0.36 -1.07 16 25 O -0.54 -8.49 12.60 5.56 0.07 -8.41 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 29 H 0.08 1.28 6.41 -51.93 -0.33 0.94 16 30 H 0.07 1.09 7.13 -51.92 -0.37 0.72 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.68 4.95 -51.93 -0.26 1.42 16 33 H 0.08 1.46 5.38 -51.93 -0.28 1.18 16 34 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.01 0.33 5.64 -51.93 -0.29 0.04 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.37 6.36 -51.93 -0.33 0.04 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.70 3.89 -51.93 -0.20 0.50 16 44 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.50 5.58 -51.93 -0.29 0.21 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -31.71 345.97 -8.36 -40.07 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -8.04 Total: -0.75 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.20 Total: -8.31 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.73 Total: -44.91 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.71 -8.36 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000472343859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.175 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds