Wall clock time and date at job start Tue Mar 31 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 N 1.46497 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.46496 * 120.00604 * 89.99408 * 4 3 2 6 6 C 1.53000 * 109.46913 * 90.00002 * 5 4 3 7 7 N 1.46906 * 109.47072 * 180.02562 * 6 5 4 8 8 C 1.48005 * 110.99589 * 298.72149 * 7 6 5 9 9 C 1.50446 * 112.82026 * 191.34576 * 8 7 6 10 10 C 1.54308 * 108.50060 * 93.73026 * 9 8 7 11 11 C 1.45883 * 112.18431 * 281.45947 * 10 9 8 12 12 C 1.54304 * 112.18347 * 61.11770 * 11 10 9 13 13 C 1.47997 * 110.99976 * 170.00224 * 7 6 5 14 14 C 1.34778 * 119.99663 * 269.99694 * 4 3 2 15 15 O 1.21687 * 120.00292 * 179.97438 * 14 4 3 16 16 C 1.46376 * 119.99818 * 0.02562 * 14 4 3 17 17 H 1.07998 * 120.00352 * 359.97438 * 16 14 4 18 18 C 1.40055 * 119.99596 * 180.02562 * 16 14 4 19 19 N 1.30667 * 120.00134 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99494 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47174 * 60.00375 * 20 18 16 22 22 H 1.48508 * 109.46943 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47789 * 299.99932 * 20 18 16 24 24 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47174 * 300.00377 * 1 2 3 26 26 H 1.08997 * 109.46831 * 60.00570 * 1 2 3 27 27 H 1.08997 * 109.47055 * 239.99375 * 2 1 3 28 28 H 1.08997 * 109.46831 * 119.99430 * 2 1 3 29 29 H 1.08994 * 109.47437 * 59.99245 * 3 2 1 30 30 H 1.09009 * 109.46800 * 299.99887 * 3 2 1 31 31 H 1.09002 * 109.46789 * 330.00562 * 5 4 3 32 32 H 1.08996 * 109.47292 * 210.00245 * 5 4 3 33 33 H 1.08993 * 109.47007 * 60.00408 * 6 5 4 34 34 H 1.08996 * 109.47340 * 300.00213 * 6 5 4 35 35 H 1.08997 * 108.81399 * 312.20647 * 8 7 6 36 36 H 1.08996 * 108.81387 * 70.48747 * 8 7 6 37 37 H 1.08998 * 109.63517 * 334.02223 * 9 8 7 38 38 H 1.09008 * 109.63095 * 213.42905 * 9 8 7 39 39 H 1.09005 * 108.94016 * 160.76067 * 10 9 8 40 40 H 1.09000 * 108.87229 * 42.10953 * 10 9 8 41 41 H 1.08999 * 108.93522 * 300.42299 * 11 10 9 42 42 H 1.08996 * 108.93945 * 181.82150 * 11 10 9 43 43 H 1.09000 * 109.63094 * 161.75714 * 12 11 10 44 44 H 1.09003 * 109.63551 * 41.17044 * 12 11 10 45 45 H 1.09000 * 108.80687 * 205.70299 * 13 7 6 46 46 H 1.09000 * 108.80895 * 324.08003 * 13 7 6 47 47 H 0.96999 * 119.99805 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2370 1.4426 -1.2695 6 6 4.4918 2.8852 -1.7112 7 7 5.2254 2.8853 -2.9840 8 6 6.5401 2.2212 -2.8384 9 6 7.4357 2.4328 -4.0285 10 6 8.3355 3.6557 -3.7529 11 6 7.6303 4.9161 -3.9586 12 6 6.4185 5.0664 -3.0153 13 6 5.2826 4.2461 -3.5631 14 6 4.1793 1.4425 1.1664 15 8 5.3962 1.4420 1.1660 16 6 3.4478 1.4418 2.4342 17 1 2.3678 1.4417 2.4347 18 6 4.1486 1.4422 3.6469 19 7 5.4553 1.4438 3.6464 20 14 3.2151 1.4420 5.2649 21 1 2.3619 0.2291 5.3440 22 1 4.1805 1.4419 6.3934 23 1 2.3608 2.6541 5.3438 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.6476 0.9289 -2.0290 32 1 5.1895 0.9288 -1.1396 33 1 5.0812 3.3989 -0.9518 34 1 3.5394 3.3990 -1.8411 35 1 7.0361 2.6142 -1.9510 36 1 6.3805 1.1513 -2.7045 37 1 6.8291 2.6169 -4.9153 38 1 8.0554 1.5493 -4.1822 39 1 9.1966 3.6190 -4.4203 40 1 8.6856 3.6105 -2.7216 41 1 7.2832 4.9627 -4.9908 42 1 8.3208 5.7407 -3.7818 43 1 6.1222 6.1141 -2.9639 44 1 6.6823 4.7082 -2.0202 45 1 5.3978 4.1635 -4.6438 46 1 4.3451 4.7590 -3.3483 47 1 5.9405 1.4437 4.4863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494850536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:18 Heat of formation + Delta-G solvation = -50.492638 kcal Electronic energy + Delta-G solvation = -23528.852010 eV Core-core repulsion = 20324.828370 eV Total energy + Delta-G solvation = -3204.023640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.26420 -37.83629 -34.92014 -34.42541 -32.64677 -32.05168 -31.73392 -29.05098 -26.53358 -25.64038 -24.82097 -24.43573 -22.07599 -21.05276 -20.43841 -19.39077 -18.74907 -16.52148 -16.19279 -15.82076 -15.49298 -14.73827 -14.53760 -14.40659 -13.89425 -13.70526 -13.47610 -13.27666 -12.97752 -12.92449 -12.61790 -12.29800 -12.12164 -11.81084 -11.46136 -11.37003 -11.32619 -11.16358 -11.01491 -10.95319 -10.74776 -10.66672 -10.64031 -10.48873 -10.32468 -10.17887 -10.15830 -9.99786 -9.86133 -8.82929 -7.88709 -7.55928 -7.17273 -6.17270 -4.61772 3.15455 3.20745 3.22098 3.98976 4.16088 4.57934 4.69064 4.70628 4.84892 4.99303 5.21486 5.31496 5.47820 5.53405 5.55190 5.59507 5.60960 5.70635 5.75547 5.81295 5.84595 5.94858 5.98752 6.03297 6.08909 6.11516 6.14063 6.18414 6.20625 6.29615 6.35240 6.36931 6.41884 6.43646 6.44509 6.58450 6.71846 6.77810 6.95835 7.37388 7.46747 7.47369 7.73305 8.18801 8.40581 9.04496 9.47234 10.60426 10.79705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.004664 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.995935 B = 6001.614204 C = 7055.547024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.131 3.869 4 N -0.643 5.643 5 C 0.132 3.868 6 C 0.048 3.952 7 N -0.548 5.548 8 C 0.060 3.940 9 C -0.118 4.118 10 C -0.123 4.123 11 C -0.113 4.113 12 C -0.152 4.152 13 C 0.063 3.937 14 C 0.558 3.442 15 O -0.578 6.578 16 C -0.542 4.542 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.903 3.097 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 3.558 -12.849 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.006 3.994 4 N -0.380 5.380 5 C 0.007 3.993 6 C -0.081 4.081 7 N -0.273 5.273 8 C -0.067 4.067 9 C -0.156 4.156 10 C -0.161 4.161 11 C -0.151 4.151 12 C -0.191 4.191 13 C -0.065 4.065 14 C 0.364 3.636 15 O -0.460 6.460 16 C -0.578 4.578 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.495 3.289 -13.045 13.536 hybrid contribution -0.098 0.533 1.420 1.520 sum -1.593 3.823 -11.625 12.341 Atomic orbital electron populations 1.21697 0.96542 1.00900 1.01266 1.21959 0.94618 0.99156 1.02317 1.21202 0.81979 0.95166 1.01035 1.48055 1.04770 1.79851 1.05330 1.20924 0.97730 0.94335 0.86270 1.22546 0.97191 0.99471 0.88896 1.61918 1.18892 1.18966 1.27557 1.21784 0.88468 0.99457 0.97009 1.21428 0.97512 0.97708 0.98938 1.20627 0.98404 0.95087 1.01970 1.20514 0.97398 0.97674 0.99468 1.21945 0.96588 1.00460 1.00134 1.21836 0.97572 0.87874 0.99236 1.18228 0.86917 0.76175 0.82315 1.90590 1.14068 1.55032 1.86345 1.20975 0.93642 1.53964 0.89261 0.91035 1.25722 0.94558 0.92660 1.00209 1.70011 1.07027 1.35433 1.27253 0.86510 0.79914 0.79473 0.81335 1.19239 1.20622 1.19297 0.93376 0.92768 0.93363 0.92969 0.91031 0.90435 0.93380 0.92457 0.91133 0.94396 0.91766 0.94272 0.90908 0.91007 0.91383 0.92458 0.92083 0.92278 0.92676 0.91736 0.91384 0.91316 0.91816 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.39 6.26 -26.73 -0.17 -2.56 16 3 C 0.13 2.44 5.12 -4.04 -0.02 2.42 16 4 N -0.64 -14.50 2.47 -175.35 -0.43 -14.93 16 5 C 0.13 2.64 5.21 -4.04 -0.02 2.62 16 6 C 0.05 0.87 5.18 -3.82 -0.02 0.86 16 7 N -0.55 -8.45 4.71 -235.91 -1.11 -9.56 16 8 C 0.06 0.92 4.32 -4.49 -0.02 0.90 16 9 C -0.12 -1.44 5.63 -27.32 -0.15 -1.59 16 10 C -0.12 -1.42 5.30 -29.41 -0.16 -1.57 16 11 C -0.11 -1.24 5.30 -29.42 -0.16 -1.39 16 12 C -0.15 -1.93 5.60 -27.33 -0.15 -2.08 16 13 C 0.06 0.82 5.16 -4.50 -0.02 0.79 16 14 C 0.56 15.68 7.61 -12.99 -0.10 15.58 16 15 O -0.58 -18.46 14.60 5.20 0.08 -18.39 16 16 C -0.54 -15.02 8.74 -35.63 -0.31 -15.33 16 17 H 0.07 1.82 6.00 -52.49 -0.31 1.50 16 18 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 19 N -0.77 -22.95 11.83 55.55 0.66 -22.30 16 20 Si 0.90 20.07 29.56 -169.99 -5.02 15.04 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.52 6.10 -51.93 -0.32 1.20 16 30 H 0.05 0.78 8.07 -51.92 -0.42 0.36 16 31 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.07 1.58 5.94 -51.93 -0.31 1.27 16 33 H 0.04 0.82 7.81 -51.93 -0.41 0.41 16 34 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 35 H 0.04 0.70 6.44 -51.93 -0.33 0.36 16 36 H 0.07 1.17 6.91 -51.93 -0.36 0.81 16 37 H 0.07 0.84 7.08 -51.93 -0.37 0.48 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16 41 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 45 H 0.07 0.81 6.59 -51.93 -0.34 0.47 16 46 H 0.06 0.81 7.63 -51.93 -0.40 0.42 16 47 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.12 357.10 -9.94 -42.06 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.46 Total: 3.32 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.03 Total: -0.62 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.89 Total: -46.79 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.08 Total: -18.39 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.12 -9.94 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494850536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.437 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds