Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46954 * 2 1 4 4 H 1.08995 * 109.47185 * 55.00172 * 3 2 1 5 5 C 1.52994 * 109.47137 * 295.00180 * 3 2 1 6 6 C 1.52997 * 109.47259 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47114 * 60.00168 * 6 5 3 8 8 C 1.52994 * 109.46920 * 300.00039 * 7 6 5 9 9 C 1.52997 * 109.47259 * 60.00049 * 8 7 6 10 10 H 1.08995 * 109.47096 * 59.99987 * 9 8 7 11 11 N 1.46507 * 109.47408 * 179.97438 * 9 8 7 12 12 C 1.34775 * 119.99876 * 275.00414 * 11 9 8 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 C 1.52997 * 109.47000 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46940 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47129 * 60.00316 * 22 20 18 24 24 H 1.48498 * 109.47276 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47240 * 300.00255 * 22 20 18 26 26 H 1.08996 * 109.47747 * 59.99592 * 1 2 3 27 27 H 1.09002 * 109.46603 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46692 * 299.99561 * 1 2 3 29 29 H 1.09000 * 109.47373 * 240.00371 * 2 1 3 30 30 H 1.09000 * 109.47520 * 119.99691 * 2 1 3 31 31 H 1.09004 * 109.47254 * 59.99990 * 5 3 2 32 32 H 1.09003 * 109.47695 * 299.99940 * 5 3 2 33 33 H 1.09004 * 109.46812 * 299.99981 * 6 5 3 34 34 H 1.09003 * 109.47189 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46923 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.47266 * 59.99948 * 7 6 5 37 37 H 1.09008 * 109.47591 * 299.99686 * 8 7 6 38 38 H 1.09004 * 109.47254 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99601 * 94.99753 * 11 9 8 40 40 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 41 41 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 42 42 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 43 43 H 1.08995 * 109.46638 * 300.00121 * 16 15 14 44 44 H 1.09006 * 109.47139 * 60.00254 * 16 15 14 45 45 H 1.08995 * 109.47672 * 299.99669 * 17 16 15 46 46 H 1.09007 * 109.47288 * 60.00489 * 17 16 15 47 47 H 0.97000 * 120.00572 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1456 3.5689 -1.3076 7 6 3.6705 3.5702 -1.1823 8 6 4.0753 2.8862 0.1250 9 6 3.5648 1.4439 0.1253 10 1 3.9990 0.9046 -0.7165 11 7 3.9529 0.7887 1.3769 12 6 5.1701 0.2214 1.4912 13 8 5.9459 0.2530 0.5556 14 7 5.5273 -0.3809 2.6428 15 6 6.8481 -1.0029 2.7650 16 6 6.9960 -1.6163 4.1589 17 6 8.3751 -2.2664 4.2863 18 6 8.5210 -2.8700 5.6594 19 1 7.7109 -2.7976 6.3700 20 6 9.6886 -3.5147 6.0086 21 7 10.6753 -3.6025 5.1435 22 14 9.8692 -4.2635 7.7103 23 1 8.8173 -5.2920 7.9127 24 1 11.2083 -4.8933 7.8345 25 1 9.7258 -3.2001 8.7369 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5488 2.1253 -1.3968 32 1 2.0697 1.5876 -2.1492 33 1 1.7113 4.1081 -0.4657 34 1 1.8568 4.0564 -2.2388 35 1 4.0341 4.5977 -1.1820 36 1 4.1047 3.0309 -2.0241 37 1 3.6411 3.4255 0.9670 38 1 5.1616 2.8875 0.2146 39 1 3.3339 0.7632 2.1232 40 1 4.9083 -0.4065 3.3892 41 1 6.9533 -1.7835 2.0115 42 1 7.6203 -0.2481 2.6165 43 1 6.8908 -0.8357 4.9123 44 1 6.2238 -2.3712 4.3074 45 1 8.4799 -3.0470 3.5329 46 1 9.1477 -1.5118 4.1376 47 1 11.4970 -4.0557 5.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507328067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -81.503766 kcal Electronic energy + Delta-G solvation = -22268.833743 eV Core-core repulsion = 19063.465360 eV Total energy + Delta-G solvation = -3205.368384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32138 -38.69477 -35.39601 -34.31307 -33.99140 -33.23562 -31.20812 -29.73246 -28.87243 -26.46626 -24.19953 -23.38019 -22.23023 -20.97141 -20.72521 -20.40434 -20.05530 -17.92648 -16.74633 -16.18481 -15.43226 -15.21836 -15.10156 -14.51488 -14.36339 -14.32763 -14.23369 -13.80900 -13.64396 -13.50903 -12.97725 -12.80241 -12.25398 -11.98848 -11.79727 -11.74597 -11.68475 -11.54507 -11.33443 -11.05024 -10.87510 -10.77321 -10.69162 -10.60780 -10.57894 -10.31633 -9.98993 -9.83038 -9.40918 -9.11700 -9.07355 -8.53927 -8.35398 -6.00100 -4.03261 2.87830 3.32899 3.37635 3.39556 3.44093 4.28585 4.34812 4.43289 4.46935 4.60036 4.76819 4.90599 4.98555 5.06884 5.16866 5.20267 5.25943 5.32785 5.35454 5.43961 5.47082 5.69969 5.70984 5.74140 5.75237 5.84545 5.85163 5.86456 5.93635 5.96289 6.04270 6.13405 6.21106 6.22878 6.57961 6.59392 6.65615 6.85891 7.05620 7.14960 7.65572 7.79017 7.98880 8.22692 8.39841 8.83400 9.03292 9.60692 11.11191 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032495 B = 0.002537 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.466215 B =11035.374281 C =11564.332891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.170 3.830 10 H 0.087 0.913 11 N -0.746 5.746 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 13.237 -11.514 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.065 3.935 10 H 0.105 0.895 11 N -0.402 5.402 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.226 0.774 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.077 13.169 -12.405 27.777 hybrid contribution -0.346 -0.474 1.724 1.821 sum -21.423 12.694 -10.681 27.096 Atomic orbital electron populations 1.21821 0.95866 1.01599 1.01720 1.21572 0.95664 0.95951 1.02651 1.21456 0.94269 0.96559 0.98911 0.90798 1.21593 1.00827 0.95615 0.96942 1.21573 0.95920 0.96643 1.01715 1.21495 0.95615 1.00555 0.97849 1.21956 1.01887 0.95448 0.97679 1.20777 0.93414 0.92611 0.86696 0.89537 1.45214 1.16116 1.61733 1.17095 1.16033 0.81982 0.78457 0.83534 1.90909 1.51915 1.65293 1.39020 1.45396 1.19407 1.60597 1.14326 1.21489 0.81515 0.96571 0.99210 1.21884 1.01865 0.99212 0.92833 1.19022 0.89602 0.95607 0.97119 1.21171 1.00343 1.35652 0.98932 0.92727 1.25029 0.95956 0.96277 0.97205 1.69954 1.05274 1.43274 1.34793 0.86643 0.77182 0.79448 0.84615 1.20256 1.21275 1.20262 0.92568 0.92835 0.92859 0.91841 0.91645 0.91366 0.91650 0.92025 0.91976 0.91883 0.91713 0.92074 0.91174 0.77443 0.77430 0.92044 0.92038 0.92815 0.92823 0.96258 0.96260 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.92 5.32 -26.73 -0.14 -1.06 16 3 C -0.09 -0.68 1.77 -90.62 -0.16 -0.84 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.11 -0.74 4.96 -26.74 -0.13 -0.87 16 6 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 7 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 8 C -0.13 -1.29 5.49 -26.74 -0.15 -1.44 16 9 C 0.17 1.72 1.90 -67.93 -0.13 1.59 16 10 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 11 N -0.75 -8.18 4.31 -58.68 -0.25 -8.43 16 12 C 0.70 10.82 8.53 -86.92 -0.74 10.08 16 13 O -0.59 -11.77 16.00 5.29 0.08 -11.68 16 14 N -0.74 -10.98 5.56 -65.22 -0.36 -11.35 16 15 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 31 H 0.07 0.39 6.57 -51.93 -0.34 0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.39 3.25 8.41 -40.82 -0.34 2.90 16 40 H 0.39 4.63 8.49 -40.82 -0.35 4.28 16 41 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.50 369.35 -10.24 -42.74 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.87 Total: 1.14 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.12 Total: -8.27 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.12 Total: -46.07 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.50 -10.24 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507328067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.764 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds