Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47149 * 2 1 4 4 H 1.09000 * 109.46741 * 55.00468 * 3 2 1 5 5 C 1.53000 * 109.47003 * 295.00578 * 3 2 1 6 6 C 1.53002 * 109.46654 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47696 * 59.99829 * 6 5 3 8 8 C 1.53000 * 109.46938 * 300.00104 * 7 6 5 9 9 C 1.52999 * 109.46887 * 175.00255 * 3 2 1 10 10 H 1.08997 * 109.47378 * 299.99525 * 9 3 2 11 11 N 1.46490 * 109.47314 * 60.00294 * 9 3 2 12 12 C 1.34776 * 120.00131 * 204.99389 * 11 9 3 13 13 O 1.21591 * 120.00195 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00267 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00376 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47299 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46886 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99923 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47093 * 90.00088 * 22 20 18 24 24 H 1.48495 * 109.46891 * 210.00496 * 22 20 18 25 25 H 1.48504 * 109.47189 * 330.00185 * 22 20 18 26 26 H 1.09005 * 109.47104 * 299.99342 * 1 2 3 27 27 H 1.08991 * 109.47741 * 60.00104 * 1 2 3 28 28 H 1.09007 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47104 * 240.00658 * 2 1 3 30 30 H 1.09002 * 109.47691 * 120.00669 * 2 1 3 31 31 H 1.08997 * 109.46788 * 299.99577 * 5 3 2 32 32 H 1.08995 * 109.47027 * 59.99701 * 5 3 2 33 33 H 1.08997 * 109.47026 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46922 * 299.99787 * 6 5 3 35 35 H 1.08999 * 109.46773 * 59.99229 * 7 6 5 36 36 H 1.08995 * 109.47773 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47194 * 299.99745 * 8 7 6 38 38 H 1.08998 * 109.47257 * 179.97438 * 8 7 6 39 39 H 0.97004 * 120.00364 * 24.99801 * 11 9 3 40 40 H 0.97003 * 119.99640 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46596 * 59.99898 * 15 14 12 42 42 H 1.09002 * 109.47129 * 300.00253 * 15 14 12 43 43 H 1.09001 * 109.46652 * 60.00269 * 16 15 14 44 44 H 1.08992 * 109.47514 * 300.00358 * 16 15 14 45 45 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 46 46 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 47 47 H 0.97000 * 119.99684 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6350 2.1266 -1.3073 6 6 2.1445 3.5693 -1.3069 7 6 3.6693 3.5718 -1.1810 8 6 4.0741 2.8877 0.1263 9 6 3.5648 1.4443 0.1257 10 1 3.8532 0.9570 1.0570 11 7 4.1488 0.7199 -1.0057 12 6 5.3659 0.1532 -0.8872 13 8 5.9789 0.2427 0.1591 14 7 5.9035 -0.5128 -1.9282 15 6 7.2262 -1.1294 -1.7992 16 6 7.5988 -1.8171 -3.1141 17 6 8.9805 -2.4604 -2.9794 18 6 9.3478 -3.1374 -4.2748 19 1 8.6643 -3.1109 -5.1106 20 6 10.5563 -3.7904 -4.3929 21 7 10.8771 -4.3806 -5.5235 22 14 11.7388 -3.8354 -2.9474 23 1 11.4563 -5.0315 -2.1139 24 1 13.1341 -3.9013 -3.4513 25 1 11.5659 -2.6090 -2.1280 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0697 1.5876 -2.1491 32 1 0.5488 2.1252 -1.3968 33 1 1.8565 4.0565 -2.2384 34 1 1.7096 4.1080 -0.4651 35 1 4.1042 3.0330 -2.0228 36 1 4.0323 4.5995 -1.1803 37 1 3.6392 3.4264 0.9681 38 1 5.1604 2.8890 0.2158 39 1 3.6597 0.6482 -1.8404 40 1 5.4146 -0.5839 -2.7630 41 1 7.2065 -1.8667 -0.9967 42 1 7.9642 -0.3611 -1.5686 43 1 7.6183 -1.0800 -3.9168 44 1 6.8608 -2.5854 -3.3442 45 1 9.7183 -1.6918 -2.7495 46 1 8.9614 -3.1975 -2.1766 47 1 11.7272 -4.8404 -5.6064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507328068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -75.095615 kcal Electronic energy + Delta-G solvation = -22590.770695 eV Core-core repulsion = 19385.680190 eV Total energy + Delta-G solvation = -3205.090505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56182 -38.69737 -35.47569 -34.24950 -33.73659 -33.19723 -31.43622 -30.04034 -29.04052 -26.90100 -24.17541 -23.21643 -22.48921 -21.24188 -20.86572 -20.38572 -19.22910 -18.24408 -16.80368 -16.05962 -15.79891 -15.55469 -15.04422 -14.80601 -14.50527 -14.27951 -13.93175 -13.80187 -13.68108 -13.48645 -12.93037 -12.68897 -12.45151 -12.43490 -11.97278 -11.89031 -11.80493 -11.74164 -11.36096 -11.04354 -11.03627 -10.87587 -10.82184 -10.49658 -10.22482 -10.18840 -9.97585 -9.79423 -9.65152 -9.21235 -9.11901 -8.60918 -8.54193 -6.05257 -4.03815 2.85182 3.32691 3.38928 3.40110 3.44962 4.26874 4.35221 4.40771 4.45801 4.47308 4.74340 4.85953 4.95900 5.04223 5.13545 5.18113 5.29077 5.29616 5.32104 5.42070 5.43065 5.56494 5.61359 5.71297 5.72639 5.72931 5.77821 5.85060 5.94593 5.97758 6.01678 6.06870 6.10582 6.15584 6.42672 6.49915 6.57356 6.73751 6.86362 7.07590 7.25683 7.38923 7.77288 8.17046 8.51524 8.77863 8.98675 9.57208 11.08038 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.002826 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.248939 B = 9907.288816 C =10112.401467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.132 4.132 9 C 0.171 3.829 10 H 0.086 0.914 11 N -0.741 5.741 12 C 0.701 3.299 13 O -0.595 6.595 14 N -0.743 5.743 15 C 0.134 3.866 16 C -0.112 4.112 17 C -0.011 4.011 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.392 0.608 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.495 15.115 10.176 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.171 4.171 9 C 0.065 3.935 10 H 0.104 0.896 11 N -0.397 5.397 12 C 0.400 3.600 13 O -0.474 6.474 14 N -0.398 5.398 15 C 0.010 3.990 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.188 1.188 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.227 0.773 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.755 15.080 11.070 28.692 hybrid contribution 0.295 -0.209 -0.202 0.414 sum -21.460 14.871 10.868 28.281 Atomic orbital electron populations 1.21822 0.95863 1.01618 1.01735 1.21550 0.95667 0.95898 1.02565 1.21491 0.94219 0.96613 0.98969 0.89848 1.21636 1.00849 0.95733 0.97132 1.21553 0.95966 0.96513 1.01680 1.21488 0.95490 1.00339 0.98230 1.21960 1.01907 0.95459 0.97768 1.20756 0.91287 0.91601 0.89842 0.89553 1.45220 1.18653 1.59003 1.16871 1.16030 0.81208 0.78523 0.84201 1.90905 1.62220 1.65984 1.28245 1.45336 1.21440 1.58282 1.14695 1.21484 0.81395 0.96505 0.99585 1.21699 1.00001 0.99107 0.94249 1.19500 0.91800 0.95742 0.97846 1.21105 1.03525 1.33339 0.97978 0.91038 1.25028 0.97926 0.94809 0.95730 1.69914 1.23243 1.35850 1.25279 0.86773 0.80259 0.79163 0.83107 1.20239 1.21395 1.18846 0.92853 0.92543 0.92834 0.91802 0.91809 0.92125 0.91451 0.92095 0.92015 0.91885 0.92229 0.91376 0.91187 0.77307 0.77318 0.92078 0.92072 0.92195 0.92210 0.96299 0.96729 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.15 0.36 -0.57 16 2 C -0.12 -0.86 5.17 -26.73 -0.14 -0.99 16 3 C -0.09 -0.65 1.98 -90.62 -0.18 -0.83 16 4 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.12 -0.70 4.79 -26.73 -0.13 -0.83 16 6 C -0.12 -0.76 5.92 -26.73 -0.16 -0.91 16 7 C -0.12 -0.94 5.77 -26.73 -0.15 -1.09 16 8 C -0.13 -1.22 5.61 -26.70 -0.15 -1.37 16 9 C 0.17 1.62 2.23 -67.90 -0.15 1.47 16 10 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 11 N -0.74 -7.66 3.62 -58.65 -0.21 -7.88 16 12 C 0.70 10.28 8.53 -86.92 -0.74 9.54 16 13 O -0.60 -11.26 16.01 5.29 0.08 -11.17 16 14 N -0.74 -10.41 5.56 -65.22 -0.36 -10.78 16 15 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 16 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 17 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 18 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 19 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 22 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.49 7.61 -51.93 -0.40 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 6.51 -51.93 -0.34 0.03 16 32 H 0.07 0.36 6.56 -51.93 -0.34 0.02 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.56 7.61 -51.93 -0.39 0.16 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.39 3.20 6.68 -40.82 -0.27 2.92 16 40 H 0.39 4.43 8.49 -40.82 -0.35 4.09 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -32.72 361.65 -9.76 -42.47 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.67 Total: 1.06 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.15 Total: -9.24 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.20 Total: -45.79 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.72 -9.76 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507328068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.625 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds