Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47372 * 2 1 4 4 H 1.09004 * 109.46733 * 304.99622 * 3 2 1 5 5 C 1.52996 * 109.47346 * 64.99822 * 3 2 1 6 6 C 1.52993 * 109.47473 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46733 * 300.00094 * 6 5 3 8 8 C 1.52996 * 109.47409 * 60.00092 * 7 6 5 9 9 C 1.53000 * 109.47233 * 185.00280 * 3 2 1 10 10 H 1.09002 * 109.47398 * 59.99826 * 9 3 2 11 11 N 1.46499 * 109.46840 * 299.99500 * 9 3 2 12 12 C 1.34778 * 119.99771 * 155.00060 * 11 9 3 13 13 O 1.21590 * 120.00051 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99734 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99521 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.46720 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47268 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47323 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00276 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99622 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00423 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47286 * 120.00188 * 22 20 18 25 25 H 1.48499 * 109.46862 * 240.00169 * 22 20 18 26 26 H 1.09002 * 109.47330 * 60.00094 * 1 2 3 27 27 H 1.09001 * 109.47333 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47130 * 300.00081 * 1 2 3 29 29 H 1.09000 * 109.47130 * 239.99919 * 2 1 3 30 30 H 1.09002 * 109.47330 * 119.99905 * 2 1 3 31 31 H 1.09000 * 109.46870 * 60.00183 * 5 3 2 32 32 H 1.09004 * 109.47108 * 300.00289 * 5 3 2 33 33 H 1.09002 * 109.47722 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.46998 * 59.99561 * 6 5 3 35 35 H 1.09004 * 109.46943 * 299.99499 * 7 6 5 36 36 H 1.09001 * 109.46630 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47452 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47054 * 59.99785 * 8 7 6 39 39 H 0.96998 * 120.00630 * 335.00662 * 11 9 3 40 40 H 0.96993 * 119.99965 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46826 * 299.99395 * 15 14 12 42 42 H 1.08996 * 109.47365 * 59.99754 * 15 14 12 43 43 H 1.08998 * 109.47323 * 299.99655 * 16 15 14 44 44 H 1.09005 * 109.47530 * 59.99856 * 16 15 14 45 45 H 1.08998 * 109.46862 * 300.00176 * 17 16 15 46 46 H 1.08996 * 109.46896 * 59.99691 * 17 16 15 47 47 H 0.96997 * 119.99910 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 2.1447 3.5692 1.3070 7 6 3.6696 3.5715 1.1810 8 6 4.0744 2.8874 -0.1263 9 6 3.5648 1.4443 -0.1258 10 1 3.8532 0.9570 -1.0572 11 7 4.1489 0.7199 1.0057 12 6 5.3659 0.1530 0.8870 13 8 5.9792 0.2433 -0.1591 14 7 5.9031 -0.5139 1.9278 15 6 7.2263 -1.1296 1.7988 16 6 7.5983 -1.8186 3.1132 17 6 8.9798 -2.4622 2.9785 18 6 9.3465 -3.1403 4.2733 19 1 8.6624 -3.1153 5.1087 20 6 10.5549 -3.7938 4.3913 21 7 11.3877 -3.8247 3.3738 22 14 11.0092 -4.6350 5.9960 23 1 9.9090 -4.4564 6.9773 24 1 11.2237 -6.0841 5.7519 25 1 12.2558 -4.0339 6.5343 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5876 2.1491 32 1 0.5489 2.1253 1.3969 33 1 1.8568 4.0565 2.2386 34 1 1.7098 4.1080 0.4652 35 1 4.1045 3.0327 2.0229 36 1 4.0326 4.5993 1.1804 37 1 5.1606 2.8894 -0.2163 38 1 3.6395 3.4262 -0.9681 39 1 3.6599 0.6481 1.8402 40 1 5.4137 -0.5862 2.7620 41 1 7.2075 -1.8661 0.9956 42 1 7.9640 -0.3607 1.5697 43 1 7.6169 -1.0825 3.9168 44 1 6.8604 -2.5876 3.3419 45 1 8.9609 -3.1984 2.1750 46 1 9.7179 -1.6935 2.7496 47 1 12.2380 -4.2841 3.4569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507328069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -78.564314 kcal Electronic energy + Delta-G solvation = -22538.132128 eV Core-core repulsion = 19332.891209 eV Total energy + Delta-G solvation = -3205.240919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51149 -38.63755 -35.34934 -34.22202 -33.68191 -33.20351 -31.21812 -29.94896 -28.96477 -26.48853 -24.14899 -23.31431 -22.52671 -21.20240 -20.81625 -20.48224 -19.18413 -18.16668 -16.48673 -15.90662 -15.75144 -15.49653 -14.97509 -14.71748 -14.45648 -14.40331 -13.97899 -13.75985 -13.63417 -13.45787 -12.89940 -12.42866 -12.40147 -12.26097 -11.81404 -11.75694 -11.73280 -11.67236 -11.32600 -11.01269 -10.90986 -10.79554 -10.69745 -10.55018 -10.46253 -10.16538 -10.00983 -9.83553 -9.41557 -9.09298 -9.05655 -8.52578 -8.36076 -6.00571 -4.03490 2.91810 3.30654 3.38098 3.41664 3.45993 4.30153 4.38296 4.43249 4.47129 4.52181 4.76966 4.88719 4.98541 5.06804 5.16524 5.21144 5.32305 5.34819 5.35250 5.44774 5.45796 5.61443 5.72981 5.74368 5.75659 5.80933 5.85248 5.87741 5.97394 6.01604 6.04569 6.13113 6.18882 6.22544 6.58651 6.62534 6.65891 6.86498 7.05951 7.16122 7.66004 7.78966 7.98780 8.23983 8.39806 8.85082 9.03555 9.60605 11.10810 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027510 B = 0.002695 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.576040 B =10389.026861 C =10599.060319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.132 4.132 9 C 0.171 3.829 10 H 0.087 0.913 11 N -0.741 5.741 12 C 0.700 3.300 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.136 3.864 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.521 4.521 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.391 0.609 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.459 13.661 -5.125 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.171 4.171 9 C 0.065 3.935 10 H 0.105 0.895 11 N -0.398 5.398 12 C 0.400 3.600 13 O -0.472 6.472 14 N -0.398 5.398 15 C 0.013 3.987 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.226 0.774 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.689 13.660 -6.163 27.191 hybrid contribution -0.046 -0.569 1.667 1.762 sum -22.735 13.092 -4.496 26.617 Atomic orbital electron populations 1.21822 0.95893 1.01592 1.01718 1.21549 0.95629 0.95923 1.02586 1.21488 0.94273 0.96588 0.98933 0.89864 1.21634 1.00803 0.95739 0.97158 1.21555 0.95998 0.96506 1.01645 1.21489 0.95451 1.00328 0.98266 1.21957 1.01956 0.95471 0.97720 1.20749 0.91232 0.91601 0.89899 0.89544 1.45226 1.18709 1.59085 1.16812 1.16048 0.81178 0.78556 0.84256 1.90908 1.62163 1.65935 1.28242 1.45391 1.21519 1.58235 1.14620 1.21479 0.81062 0.96495 0.99707 1.21883 1.01133 0.98773 0.94010 1.19030 0.89385 0.95610 0.97378 1.21248 1.02425 1.33679 0.98591 0.92623 1.25036 0.96531 0.96446 0.96508 1.69980 1.09546 1.43410 1.30347 0.86530 0.78381 0.79272 0.83768 1.19769 1.21011 1.21007 0.92860 0.92852 0.92564 0.91783 0.91808 0.92142 0.91488 0.92131 0.92020 0.91892 0.92246 0.91144 0.91400 0.77387 0.77497 0.92058 0.92059 0.92832 0.92830 0.96255 0.96260 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.15 0.36 -0.60 16 2 C -0.12 -0.89 5.17 -26.73 -0.14 -1.03 16 3 C -0.09 -0.67 1.98 -90.62 -0.18 -0.85 16 4 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.12 -0.72 4.79 -26.74 -0.13 -0.85 16 6 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 7 C -0.12 -0.97 5.77 -26.73 -0.15 -1.12 16 8 C -0.13 -1.27 5.61 -26.71 -0.15 -1.42 16 9 C 0.17 1.69 2.23 -67.91 -0.15 1.54 16 10 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 11 N -0.74 -8.01 3.62 -58.65 -0.21 -8.22 16 12 C 0.70 10.72 8.53 -86.91 -0.74 9.98 16 13 O -0.59 -11.70 16.01 5.29 0.08 -11.62 16 14 N -0.74 -10.96 5.56 -65.22 -0.36 -11.32 16 15 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 7.61 -51.93 -0.40 0.11 16 31 H 0.06 0.38 6.51 -51.93 -0.34 0.04 16 32 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.58 7.61 -51.93 -0.39 0.18 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.39 3.34 6.68 -40.82 -0.27 3.07 16 40 H 0.39 4.64 8.49 -40.82 -0.35 4.29 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -32.36 365.25 -10.13 -42.49 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.71 Total: 1.23 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.15 Total: -8.36 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.16 Total: -45.81 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.36 -10.13 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507328069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.078 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds