Wall clock time and date at job start Tue Mar 31 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.53006 * 109.46623 * 65.00288 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 9 9 C 1.52997 * 109.47269 * 185.00124 * 3 2 1 10 10 H 1.09000 * 109.47140 * 300.00547 * 9 3 2 11 11 N 1.46496 * 109.47079 * 59.99995 * 9 3 2 12 12 C 1.34777 * 120.00336 * 204.99808 * 11 9 3 13 13 O 1.21589 * 119.99843 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00201 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00149 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.47416 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47213 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47113 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00293 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47177 * 89.99992 * 22 20 18 24 24 H 1.48490 * 109.47250 * 210.00452 * 22 20 18 25 25 H 1.48504 * 109.46755 * 330.00358 * 22 20 18 26 26 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 27 27 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 29 29 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 30 30 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 34 34 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 36 36 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 37 37 H 1.08992 * 109.47534 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47134 * 59.99508 * 8 7 6 39 39 H 0.97005 * 119.99981 * 25.00493 * 11 9 3 40 40 H 0.97006 * 120.00081 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.46988 * 299.99823 * 15 14 12 42 42 H 1.08995 * 109.47481 * 59.99654 * 15 14 12 43 43 H 1.09000 * 109.46967 * 299.99920 * 16 15 14 44 44 H 1.09003 * 109.46865 * 59.99774 * 16 15 14 45 45 H 1.09009 * 109.47032 * 299.99618 * 17 16 15 46 46 H 1.08995 * 109.47530 * 59.99833 * 17 16 15 47 47 H 0.97001 * 120.00608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 2.1458 3.5687 1.3077 7 6 3.6706 3.5701 1.1823 8 6 4.0753 2.8862 -0.1251 9 6 3.5648 1.4444 -0.1257 10 1 3.9994 0.9053 0.7160 11 7 3.9523 0.7894 -1.3775 12 6 5.1697 0.2226 -1.4928 13 8 5.9461 0.2544 -0.5576 14 7 5.5264 -0.3795 -2.6446 15 6 6.8493 -0.9961 -2.7697 16 6 6.9984 -1.6049 -4.1655 17 6 8.3803 -2.2484 -4.2963 18 6 8.5274 -2.8474 -5.6713 19 1 7.7164 -2.7760 -6.3810 20 6 9.6976 -3.4858 -6.0235 21 7 10.6852 -3.5724 -5.1595 22 14 9.8796 -4.2290 -7.7277 23 1 10.4464 -3.2146 -8.6522 24 1 10.7885 -5.4014 -7.6619 25 1 8.5484 -4.6619 -8.2236 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1250 1.3970 32 1 2.0699 1.5873 2.1492 33 1 1.7114 4.1081 0.4660 34 1 1.8578 4.0558 2.2394 35 1 4.1049 3.0308 2.0240 36 1 4.0343 4.5977 1.1829 37 1 5.1616 2.8868 -0.2144 38 1 3.6409 3.4255 -0.9669 39 1 3.3328 0.7638 -2.1235 40 1 4.9068 -0.4052 -3.3906 41 1 7.6188 -0.2389 -2.6191 42 1 6.9579 -1.7787 -2.0189 43 1 6.2289 -2.3622 -4.3157 44 1 6.8897 -0.8225 -4.9166 45 1 9.1496 -1.4907 -4.1464 46 1 8.4895 -3.0306 -3.5452 47 1 11.5084 -4.0218 -5.4072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507328270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:13 Heat of formation + Delta-G solvation = -81.546901 kcal Electronic energy + Delta-G solvation = -22268.980164 eV Core-core repulsion = 19063.609910 eV Total energy + Delta-G solvation = -3205.370254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32252 -38.69483 -35.39639 -34.31336 -33.99207 -33.23724 -31.20916 -29.73340 -28.87267 -26.46783 -24.20127 -23.38152 -22.23087 -20.97236 -20.72520 -20.40433 -20.05556 -17.92641 -16.74738 -16.18760 -15.43213 -15.21874 -15.10209 -14.51346 -14.36368 -14.32797 -14.23235 -13.80941 -13.64441 -13.50923 -12.97797 -12.80253 -12.26339 -11.98901 -11.79495 -11.74541 -11.68561 -11.54468 -11.33486 -11.05030 -10.89588 -10.77320 -10.69484 -10.58632 -10.57308 -10.31669 -9.98988 -9.83425 -9.41217 -9.10678 -9.07364 -8.53957 -8.35805 -6.00374 -4.03441 2.87804 3.31565 3.37882 3.40696 3.44061 4.28536 4.34769 4.43301 4.46866 4.60015 4.76800 4.90594 4.98544 5.06876 5.16857 5.20266 5.26031 5.32788 5.35326 5.43967 5.47067 5.69948 5.70963 5.74127 5.75244 5.84522 5.85143 5.86473 5.93624 5.96289 6.04264 6.13466 6.21099 6.22863 6.57952 6.59422 6.65570 6.85856 7.05573 7.14915 7.65692 7.78886 7.98736 8.22645 8.39747 8.83377 9.03341 9.60613 11.10950 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032504 B = 0.002536 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.212586 B =11036.748201 C =11564.906159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.170 3.830 10 H 0.086 0.914 11 N -0.746 5.746 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.392 0.608 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.068 13.171 11.552 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.065 3.935 10 H 0.105 0.895 11 N -0.402 5.402 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.226 0.774 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.125 13.098 12.444 27.797 hybrid contribution -0.328 -0.463 -1.723 1.814 sum -21.453 12.636 10.721 27.108 Atomic orbital electron populations 1.21821 0.95866 1.01599 1.01721 1.21570 0.95664 0.95950 1.02651 1.21457 0.94271 0.96559 0.98909 0.90800 1.21594 1.00828 0.95614 0.96940 1.21573 0.95921 0.96646 1.01711 1.21497 0.95618 1.00559 0.97846 1.21946 1.01889 0.95451 0.97681 1.20767 0.93419 0.92624 0.86689 0.89543 1.45213 1.16095 1.61747 1.17101 1.16035 0.81989 0.78446 0.83540 1.90911 1.51883 1.65283 1.39066 1.45395 1.19262 1.60735 1.14330 1.21487 0.81442 0.96660 0.99195 1.21885 1.01862 0.99241 0.92804 1.19027 0.89568 0.95658 0.97134 1.21207 1.00161 1.35831 0.98815 0.92675 1.25030 0.95974 0.96272 0.97212 1.69964 1.05130 1.43500 1.34696 0.86585 0.77965 0.78805 0.84574 1.20668 1.21208 1.19914 0.92857 0.92835 0.92570 0.91647 0.91841 0.91365 0.91651 0.92018 0.91977 0.91720 0.91881 0.91168 0.92071 0.77442 0.77430 0.92040 0.92044 0.92813 0.92823 0.96263 0.96246 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.92 5.32 -26.73 -0.14 -1.06 16 3 C -0.09 -0.68 1.77 -90.62 -0.16 -0.84 16 4 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.11 -0.74 4.96 -26.73 -0.13 -0.87 16 6 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.10 16 8 C -0.13 -1.29 5.49 -26.75 -0.15 -1.44 16 9 C 0.17 1.72 1.90 -67.96 -0.13 1.59 16 10 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 11 N -0.75 -8.18 4.31 -58.70 -0.25 -8.43 16 12 C 0.70 10.82 8.53 -86.92 -0.74 10.08 16 13 O -0.59 -11.77 16.01 5.29 0.08 -11.68 16 14 N -0.74 -10.98 5.56 -65.23 -0.36 -11.34 16 15 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 16 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 29 H 0.06 0.54 7.30 -51.93 -0.38 0.16 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.39 6.56 -51.93 -0.34 0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.39 3.24 8.41 -40.82 -0.34 2.90 16 40 H 0.39 4.63 8.49 -40.82 -0.35 4.28 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -32.52 369.35 -10.25 -42.76 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.87 Total: 1.10 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.12 Total: -8.26 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.12 Total: -46.06 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.52 -10.25 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507328270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.783 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds