Wall clock time and date at job start Tue Mar 31 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 H 1.09000 * 109.47486 * 305.00460 * 3 2 1 5 5 C 1.53006 * 109.46623 * 65.00288 * 3 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 9 9 C 1.52997 * 109.47269 * 185.00124 * 3 2 1 10 10 H 1.09000 * 109.47140 * 300.00547 * 9 3 2 11 11 N 1.46496 * 109.47079 * 59.99995 * 9 3 2 12 12 C 1.34777 * 120.00336 * 204.99808 * 11 9 3 13 13 O 1.21589 * 119.99843 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00201 * 180.02562 * 12 11 9 15 15 C 1.46495 * 120.00149 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.47416 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47213 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47113 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00293 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47177 * 89.99992 * 22 20 18 24 24 H 1.48490 * 109.47250 * 210.00452 * 22 20 18 25 25 H 1.48504 * 109.46755 * 330.00358 * 22 20 18 26 26 H 1.08994 * 109.47199 * 59.99565 * 1 2 3 27 27 H 1.09001 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47048 * 299.99452 * 1 2 3 29 29 H 1.09000 * 109.47048 * 240.00548 * 2 1 3 30 30 H 1.08994 * 109.47199 * 120.00435 * 2 1 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 5 3 2 32 32 H 1.09000 * 109.47050 * 59.99904 * 5 3 2 33 33 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 34 34 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 36 36 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 37 37 H 1.08992 * 109.47534 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47134 * 59.99508 * 8 7 6 39 39 H 0.97005 * 119.99981 * 25.00493 * 11 9 3 40 40 H 0.97006 * 120.00081 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.46988 * 299.99823 * 15 14 12 42 42 H 1.08995 * 109.47481 * 59.99654 * 15 14 12 43 43 H 1.09000 * 109.46967 * 299.99920 * 16 15 14 44 44 H 1.09003 * 109.46865 * 59.99774 * 16 15 14 45 45 H 1.09009 * 109.47032 * 299.99618 * 17 16 15 46 46 H 1.08995 * 109.47530 * 59.99833 * 17 16 15 47 47 H 0.97001 * 120.00608 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1264 1.3075 6 6 2.1458 3.5687 1.3077 7 6 3.6706 3.5701 1.1823 8 6 4.0753 2.8862 -0.1251 9 6 3.5648 1.4444 -0.1257 10 1 3.9994 0.9053 0.7160 11 7 3.9523 0.7894 -1.3775 12 6 5.1697 0.2226 -1.4928 13 8 5.9461 0.2544 -0.5576 14 7 5.5264 -0.3795 -2.6446 15 6 6.8493 -0.9961 -2.7697 16 6 6.9984 -1.6049 -4.1655 17 6 8.3803 -2.2484 -4.2963 18 6 8.5274 -2.8474 -5.6713 19 1 7.7164 -2.7760 -6.3810 20 6 9.6976 -3.4858 -6.0235 21 7 10.6852 -3.5724 -5.1595 22 14 9.8796 -4.2290 -7.7277 23 1 10.4464 -3.2146 -8.6522 24 1 10.7885 -5.4014 -7.6619 25 1 8.5484 -4.6619 -8.2236 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1250 1.3970 32 1 2.0699 1.5873 2.1492 33 1 1.7114 4.1081 0.4660 34 1 1.8578 4.0558 2.2394 35 1 4.1049 3.0308 2.0240 36 1 4.0343 4.5977 1.1829 37 1 5.1616 2.8868 -0.2144 38 1 3.6409 3.4255 -0.9669 39 1 3.3328 0.7638 -2.1235 40 1 4.9068 -0.4052 -3.3906 41 1 7.6188 -0.2389 -2.6191 42 1 6.9579 -1.7787 -2.0189 43 1 6.2289 -2.3622 -4.3157 44 1 6.8897 -0.8225 -4.9166 45 1 9.1496 -1.4907 -4.1464 46 1 8.4895 -3.0306 -3.5452 47 1 11.5084 -4.0218 -5.4072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507328270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:12 Heat of formation + Delta-G solvation = -101.665490 kcal Electronic energy + Delta-G solvation = -22269.852571 eV Core-core repulsion = 19063.609910 eV Total energy + Delta-G solvation = -3206.242662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37575 -39.64665 -36.96583 -35.25589 -35.08634 -34.79648 -32.96037 -30.54416 -29.68543 -28.23197 -25.06916 -24.80444 -23.25769 -22.29874 -21.72306 -21.53287 -20.91728 -19.10890 -18.53567 -17.55438 -16.78713 -16.54525 -16.13385 -15.78863 -15.59669 -15.43603 -15.13336 -14.77479 -14.62765 -14.27433 -14.12930 -13.80795 -13.66056 -13.57518 -13.37701 -12.75597 -12.55473 -12.54229 -12.36948 -12.33420 -12.22873 -12.00092 -11.67602 -11.66736 -11.63924 -11.40383 -11.32241 -11.21678 -11.13125 -10.91353 -10.55333 -10.29354 -9.71540 -8.19227 -6.30915 1.41712 1.43367 1.54248 1.73048 2.17261 2.42190 3.14472 3.32639 3.61120 3.77372 3.94033 4.14629 4.17741 4.23067 4.25661 4.36150 4.44519 4.51117 4.55503 4.56376 4.58300 4.74038 4.84731 4.89834 4.95974 4.97636 5.05535 5.11914 5.16849 5.19414 5.19896 5.27642 5.33018 5.34261 5.38014 5.47483 5.51083 5.54800 5.57758 5.67273 5.71222 5.84461 6.05323 6.22867 6.86496 7.14944 7.38706 7.61973 8.93049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032504 B = 0.002536 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.212586 B =11036.748201 C =11564.906159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.082 4.082 4 H 0.092 0.908 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.127 4.127 9 C 0.169 3.831 10 H 0.056 0.944 11 N -0.725 5.725 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.731 5.731 15 C 0.150 3.850 16 C -0.099 4.099 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.260 1.260 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.009 1.009 46 H -0.008 1.008 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.034 13.980 10.080 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.110 0.890 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.166 4.166 9 C 0.064 3.936 10 H 0.074 0.926 11 N -0.381 5.381 12 C 0.397 3.603 13 O -0.523 6.523 14 N -0.387 5.387 15 C 0.026 3.974 16 C -0.137 4.137 17 C -0.014 4.014 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.170 13.930 10.943 29.967 hybrid contribution 0.604 -0.694 -1.200 1.513 sum -23.566 13.236 9.743 28.731 Atomic orbital electron populations 1.21788 0.94399 1.01815 1.02589 1.21555 0.96892 0.95757 1.01626 1.21405 0.91593 0.96869 1.00212 0.89000 1.21611 1.01868 0.95439 0.95940 1.21550 0.94151 0.96746 1.02860 1.21497 0.97247 1.00448 0.96243 1.21893 0.99710 0.95580 0.99392 1.20870 0.95487 0.92180 0.85059 0.92612 1.45046 1.14649 1.60298 1.18087 1.16204 0.82783 0.78463 0.82869 1.90885 1.53672 1.67012 1.40727 1.45030 1.18316 1.60338 1.15003 1.21047 0.82852 0.95760 0.97786 1.21580 0.98558 0.99630 0.93942 1.18943 0.92338 0.94391 0.95763 1.21680 1.00618 1.35726 0.99798 0.91469 1.26043 0.95628 0.96789 1.01747 1.70115 1.05818 1.44549 1.37154 0.85399 0.78476 0.77843 0.79030 1.19792 1.21053 1.18365 0.91877 0.93035 0.91757 0.92348 0.93318 0.89508 0.92591 0.90861 0.90784 0.92951 0.91195 0.94644 0.90605 0.75346 0.75237 0.93744 0.93731 0.91339 0.91345 0.99029 0.98999 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.12 -1.64 5.32 30.59 0.16 -1.48 16 3 C -0.08 -1.04 1.77 -10.79 -0.02 -1.06 16 4 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 5 C -0.11 -1.21 4.96 30.60 0.15 -1.06 16 6 C -0.12 -1.23 5.92 30.59 0.18 -1.04 16 7 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 8 C -0.13 -2.46 5.49 30.58 0.17 -2.30 16 9 C 0.17 3.36 1.90 44.98 0.09 3.45 16 10 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 11 N -0.73 -15.31 4.31 -457.89 -1.97 -17.28 16 12 C 0.70 21.67 8.53 179.05 1.53 23.20 16 13 O -0.64 -26.52 16.01 -4.00 -0.06 -26.59 16 14 N -0.73 -21.14 5.56 -478.54 -2.66 -23.80 16 15 C 0.15 5.56 5.67 86.38 0.49 6.05 16 16 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 17 C 0.02 1.24 4.97 29.85 0.15 1.38 16 18 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 21 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 29 H 0.06 0.87 7.30 -2.39 -0.02 0.85 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.69 6.56 -2.39 -0.02 0.67 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 5.86 8.41 -92.70 -0.78 5.08 16 40 H 0.41 8.83 8.49 -92.70 -0.79 8.04 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -72.59 369.35 1.61 -70.98 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.64 Total: 17.08 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.63 Total: -8.95 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.35 Total: -98.59 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.59 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.59 1.61 -70.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507328270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.684 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds