Wall clock time and date at job start Tue Mar 31 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47030 * 2 1 4 4 H 1.09002 * 109.46702 * 301.12930 * 3 2 1 5 5 C 1.50701 * 109.46952 * 181.13040 * 3 2 1 6 6 H 1.08003 * 119.99867 * 239.99318 * 5 3 2 7 7 C 1.37875 * 119.99836 * 60.00266 * 5 3 2 8 8 N 1.31512 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99742 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47021 * 59.99819 * 9 7 5 11 11 H 1.48504 * 109.47078 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47231 * 299.99881 * 9 7 5 13 13 N 1.46900 * 109.47018 * 61.12819 * 3 2 1 14 14 C 1.46904 * 110.99747 * 209.66208 * 13 3 2 15 15 C 1.50700 * 109.46682 * 174.96819 * 14 13 3 16 16 O 1.21282 * 120.00371 * 8.48793 * 15 14 13 17 17 N 1.34774 * 120.00011 * 188.48272 * 15 14 13 18 18 C 1.46927 * 120.62951 * 13.41090 * 17 15 14 19 19 H 1.08992 * 109.59195 * 113.79721 * 18 17 15 20 20 C 1.52999 * 109.58588 * 353.51099 * 18 17 15 21 21 C 1.53192 * 108.77515 * 233.58615 * 18 17 15 22 22 C 1.53046 * 109.31076 * 305.36075 * 21 18 17 23 23 C 1.53043 * 109.53637 * 61.36635 * 22 21 18 24 24 C 1.46930 * 120.63534 * 193.12579 * 17 15 14 25 25 H 1.08999 * 109.58673 * 246.20764 * 24 17 15 26 26 C 1.53001 * 109.58171 * 6.62819 * 24 17 15 27 27 H 1.08994 * 109.47602 * 304.97535 * 1 2 3 28 28 H 1.09007 * 109.46796 * 64.97352 * 1 2 3 29 29 H 1.09004 * 109.47098 * 184.96834 * 1 2 3 30 30 H 1.09000 * 109.47581 * 239.99935 * 2 1 3 31 31 H 1.08997 * 109.47239 * 119.99406 * 2 1 3 32 32 H 0.97003 * 120.00417 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99790 * 85.71020 * 13 3 2 34 34 H 1.09000 * 109.47257 * 294.96388 * 14 13 3 35 35 H 1.08995 * 109.46849 * 54.97342 * 14 13 3 36 36 H 1.08996 * 109.47422 * 76.34643 * 20 18 17 37 37 H 1.09000 * 109.47444 * 196.34959 * 20 18 17 38 38 H 1.09010 * 109.47345 * 316.34436 * 20 18 17 39 39 H 1.09000 * 109.49985 * 65.30838 * 21 18 17 40 40 H 1.09002 * 109.50131 * 185.41385 * 21 18 17 41 41 H 1.09003 * 109.45828 * 181.38452 * 22 21 18 42 42 H 1.09000 * 109.45983 * 301.34324 * 22 21 18 43 43 H 1.09003 * 109.49833 * 58.58714 * 23 22 21 44 44 H 1.09002 * 109.49670 * 178.64866 * 23 22 21 45 45 H 1.09003 * 109.47436 * 59.83849 * 26 24 17 46 46 H 1.09002 * 109.46884 * 179.83182 * 26 24 17 47 47 H 1.08992 * 109.47597 * 299.83386 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6601 1.9622 -0.8797 5 6 3.5467 1.4427 -0.0280 6 1 4.1017 1.9051 0.7748 7 6 4.2167 0.8525 -1.0787 8 7 3.5409 0.2891 -2.0561 9 14 6.0844 0.8533 -1.1138 10 1 6.6022 0.1457 0.0847 11 1 6.5567 0.1606 -2.3395 12 1 6.5789 2.2534 -1.1141 13 7 1.5727 2.1271 1.2128 14 6 1.4002 3.5660 0.9719 15 6 0.8046 4.2124 2.1960 16 8 0.6915 3.5772 3.2230 17 7 0.3977 5.4964 2.1496 18 6 0.2515 6.1892 0.8622 19 1 -0.7996 6.4195 0.6884 20 6 0.7736 5.2947 -0.2639 21 6 1.0613 7.4888 0.9069 22 6 0.6250 8.3155 2.1188 23 6 0.9028 7.5289 3.4018 24 6 0.0858 6.2281 3.3850 25 1 -0.9786 6.4613 3.4127 26 6 0.4577 5.3708 4.5965 27 1 -0.3634 0.5890 0.8420 28 1 -0.3633 0.4348 -0.9313 29 1 -0.3633 -1.0238 0.0890 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 4.0122 -0.1264 -2.7952 33 1 2.2004 1.9626 1.9855 34 1 2.3690 4.0172 0.7577 35 1 0.7342 3.7147 0.1220 36 1 0.0418 4.5158 -0.4782 37 1 0.9376 5.8952 -1.1586 38 1 1.7136 4.8357 0.0428 39 1 2.1224 7.2536 0.9900 40 1 0.8848 8.0591 -0.0051 41 1 1.1825 9.2520 2.1391 42 1 -0.4414 8.5294 2.0475 43 1 1.9654 7.2933 3.4613 44 1 0.6141 8.1279 4.2655 45 1 1.5231 5.1426 4.5669 46 1 0.2284 5.9164 5.5118 47 1 -0.1134 4.4427 4.5740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515178025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:45 Heat of formation + Delta-G solvation = 38.850486 kcal Electronic energy + Delta-G solvation = -24120.659768 eV Core-core repulsion = 20920.510337 eV Total energy + Delta-G solvation = -3200.149432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74643 -37.34335 -36.30716 -34.62000 -32.67756 -32.18246 -30.99195 -29.04298 -27.92656 -26.21088 -25.11135 -23.02373 -21.97211 -21.64769 -20.78938 -19.55437 -18.81572 -16.88134 -16.17524 -15.86567 -15.61603 -14.86771 -14.51485 -14.33156 -14.20202 -13.97732 -13.71231 -13.33157 -12.97233 -12.87290 -12.76021 -12.26325 -12.03899 -11.86244 -11.69288 -11.45041 -11.31229 -11.13239 -11.09598 -10.96768 -10.86783 -10.70653 -10.69581 -10.52093 -10.05739 -9.68396 -9.53889 -9.35857 -9.01607 -8.61221 -8.37717 -8.34041 -7.14820 -6.00191 -4.13291 3.06851 3.15182 3.27346 3.32869 3.35828 4.38656 4.57488 4.64570 4.68802 4.85199 5.02918 5.16586 5.22275 5.24835 5.33191 5.42765 5.48328 5.55787 5.67034 5.71053 5.77723 5.82635 5.87228 5.90477 5.99236 6.08460 6.12947 6.21041 6.30688 6.40439 6.46096 6.53772 6.58496 6.78159 6.91074 7.11745 7.25467 7.47406 7.57928 7.71469 7.79750 8.10593 8.16114 8.34692 8.63494 8.72827 9.00728 9.54504 10.99656 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.004860 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.702314 B = 5759.481119 C = 6231.260313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.031 0.969 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.679 5.679 14 C -0.001 4.001 15 C 0.520 3.480 16 O -0.522 6.522 17 N -0.619 5.619 18 C 0.146 3.854 19 H 0.070 0.930 20 C -0.225 4.225 21 C -0.132 4.132 22 C -0.119 4.119 23 C -0.132 4.132 24 C 0.147 3.853 25 H 0.065 0.935 26 C -0.153 4.153 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.333 0.667 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 15.052 5.105 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.131 4.131 15 C 0.309 3.691 16 O -0.397 6.397 17 N -0.356 5.356 18 C 0.043 3.957 19 H 0.088 0.912 20 C -0.280 4.280 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.170 4.170 24 C 0.044 3.956 25 H 0.083 0.917 26 C -0.209 4.209 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.554 14.427 5.366 17.146 hybrid contribution 2.072 0.502 -0.188 2.140 sum -5.482 14.929 5.178 16.726 Atomic orbital electron populations 1.21727 0.99070 0.98565 1.00355 1.21478 0.92015 0.99092 1.01678 1.19127 0.92142 0.91154 0.86588 0.95140 1.21830 0.92524 1.37444 1.06812 0.92951 1.24910 0.98031 0.94922 0.95462 1.69867 1.35159 1.37037 1.10153 0.86731 0.86139 0.78116 0.77430 1.20274 1.21222 1.20461 1.60753 1.54661 1.06063 1.09520 1.24233 1.00187 0.91467 0.97215 1.21196 0.76798 0.80326 0.90758 1.90601 1.54528 1.62201 1.32401 1.48360 1.68999 1.11966 1.06314 1.21111 0.99104 0.92207 0.83297 0.91246 1.24160 1.05799 1.00065 0.97975 1.22008 1.00846 0.95780 0.98388 1.21516 1.01293 0.98220 0.94628 1.22096 1.00953 0.96120 0.97823 1.21230 0.98055 0.91461 0.84881 0.91716 1.22363 1.03355 1.00937 0.94291 0.92789 0.94782 0.95721 0.89347 0.94971 0.92818 0.84949 0.91959 0.84188 0.90172 0.91658 0.85917 0.91220 0.90888 0.91869 0.91971 0.91528 0.91196 0.92595 0.94070 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.84 37.16 0.37 -2.58 16 2 C -0.10 -2.52 5.43 -26.73 -0.15 -2.66 16 3 C 0.22 5.28 2.04 -68.86 -0.14 5.14 16 4 H 0.03 0.79 7.65 -51.93 -0.40 0.39 16 5 C -0.55 -14.49 8.55 -34.44 -0.29 -14.78 16 6 H 0.05 1.39 7.67 -52.48 -0.40 0.99 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.46 11.31 55.43 0.63 -23.83 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -14.65 5.07 -146.72 -0.74 -15.39 16 14 C 0.00 -0.02 3.68 -4.97 -0.02 -0.03 16 15 C 0.52 8.98 7.39 -10.99 -0.08 8.90 16 16 O -0.52 -10.42 12.11 5.56 0.07 -10.35 16 17 N -0.62 -8.52 2.97 -157.48 -0.47 -8.99 16 18 C 0.15 1.65 3.48 -67.60 -0.24 1.42 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.22 -2.72 7.28 37.16 0.27 -2.45 16 21 C -0.13 -1.26 5.32 -26.61 -0.14 -1.40 16 22 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 23 C -0.13 -1.32 5.40 -26.39 -0.14 -1.46 16 24 C 0.15 1.80 3.51 -67.37 -0.24 1.56 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 C -0.15 -2.09 7.67 37.16 0.29 -1.81 16 27 H 0.05 1.14 7.49 -51.93 -0.39 0.75 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.33 7.61 8.08 -39.29 -0.32 7.29 16 34 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 35 H 0.14 2.35 3.21 -93.87 -0.30 2.05 16 36 H 0.08 1.03 6.23 -51.93 -0.32 0.71 16 37 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 38 H 0.12 1.76 3.40 -99.42 -0.34 1.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.10 1.62 5.91 -52.00 -0.31 1.31 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -28.50 346.89 -9.52 -38.02 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.45 Total: 9.03 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.77 Total: -9.58 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.58 Total: -48.21 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.50 -9.52 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515178025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.870 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds