Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47149 * 2 1 4 4 H 1.09000 * 109.47463 * 305.20338 * 3 2 1 5 5 C 1.50705 * 109.47269 * 185.20206 * 3 2 1 6 6 H 1.07992 * 120.00070 * 267.84340 * 5 3 2 7 7 C 1.37874 * 119.99561 * 87.56601 * 5 3 2 8 8 N 1.31516 * 120.00022 * 179.85546 * 7 5 3 9 9 Si 1.86806 * 120.00319 * 359.85505 * 7 5 3 10 10 H 1.48502 * 109.47033 * 85.42999 * 9 7 5 11 11 H 1.48503 * 109.47044 * 205.43388 * 9 7 5 12 12 H 1.48501 * 109.46952 * 325.43185 * 9 7 5 13 13 N 1.46909 * 109.47145 * 65.20629 * 3 2 1 14 14 C 1.46896 * 110.99735 * 256.45181 * 13 3 2 15 15 C 1.50697 * 109.46704 * 184.85530 * 14 13 3 16 16 O 1.21280 * 120.00478 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00199 * 179.97438 * 15 14 13 18 18 C 1.46926 * 120.62615 * 5.41977 * 17 15 14 19 19 H 1.09001 * 109.58747 * 6.63456 * 18 17 15 20 20 C 1.52991 * 109.58947 * 246.20570 * 18 17 15 21 21 C 1.53624 * 108.54090 * 126.37205 * 18 17 15 22 22 C 1.53045 * 109.24280 * 54.85641 * 21 18 17 23 23 C 1.53040 * 109.53706 * 298.51459 * 22 21 18 24 24 C 1.46925 * 120.63175 * 185.70622 * 17 15 14 25 25 H 1.09001 * 109.58303 * 113.79814 * 24 17 15 26 26 C 1.52995 * 109.58687 * 353.37297 * 24 17 15 27 27 H 1.09001 * 109.47184 * 295.18639 * 1 2 3 28 28 H 1.08998 * 109.47334 * 55.18866 * 1 2 3 29 29 H 1.09000 * 109.46908 * 175.19096 * 1 2 3 30 30 H 1.09003 * 109.46685 * 240.00515 * 2 1 3 31 31 H 1.08995 * 109.47050 * 120.00543 * 2 1 3 32 32 H 0.96998 * 120.00197 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99809 * 20.40310 * 13 3 2 34 34 H 1.09004 * 109.46856 * 304.85245 * 14 13 3 35 35 H 1.08995 * 109.47738 * 64.85504 * 14 13 3 36 36 H 1.08998 * 109.47692 * 59.99853 * 20 18 17 37 37 H 1.09004 * 109.47406 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47444 * 300.00168 * 20 18 17 39 39 H 1.09004 * 109.63481 * 294.86995 * 21 18 17 40 40 H 1.08994 * 109.43659 * 174.72919 * 21 18 17 41 41 H 1.09000 * 109.46249 * 178.49377 * 22 21 18 42 42 H 1.08998 * 109.45810 * 58.53043 * 22 21 18 43 43 H 1.09008 * 109.49862 * 301.40964 * 23 22 21 44 44 H 1.08996 * 109.49877 * 181.31659 * 23 22 21 45 45 H 1.08997 * 109.47175 * 63.80698 * 26 24 17 46 46 H 1.09000 * 109.46981 * 183.80646 * 26 24 17 47 47 H 1.08997 * 109.47099 * 303.80325 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6026 1.9825 -0.8397 5 6 3.5415 1.4444 -0.1288 6 1 4.1595 1.4520 0.7568 7 6 4.1262 1.4307 -1.3774 8 7 5.4366 1.4353 -1.4899 9 14 3.0574 1.4055 -2.9092 10 1 2.6762 2.7948 -3.2696 11 1 3.8139 0.7929 -4.0307 12 1 1.8323 0.6089 -2.6449 13 7 1.6556 2.0977 1.2574 14 6 0.5201 3.0066 1.0516 15 6 0.2314 3.7475 2.3317 16 8 0.9049 3.5386 3.3184 17 7 -0.7754 4.6423 2.3801 18 6 -1.6742 4.8207 1.2316 19 1 -1.4539 4.0677 0.4748 20 6 -1.4801 6.2183 0.6405 21 6 -3.1232 4.6586 1.7155 22 6 -3.3805 5.6285 2.8711 23 6 -2.4442 5.2972 4.0355 24 6 -0.9910 5.4624 3.5800 25 1 -0.7981 6.5095 3.3464 26 6 -0.0487 5.0002 4.6932 27 1 -0.3633 0.4373 0.9300 28 1 -0.3634 0.5867 -0.8437 29 1 -0.3633 -1.0241 -0.0862 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.8480 1.4253 -2.3683 33 1 1.4483 1.4160 1.9718 34 1 0.7644 3.7210 0.2654 35 1 -0.3579 2.4308 0.7592 36 1 -0.4469 6.3343 0.3133 37 1 -2.1480 6.3488 -0.2110 38 1 -1.7074 6.9682 1.3983 39 1 -3.2832 3.6358 2.0567 40 1 -3.8063 4.8802 0.8957 41 1 -4.4156 5.5354 3.1997 42 1 -3.1963 6.6493 2.5363 43 1 -2.6106 4.2682 4.3548 44 1 -2.6440 5.9732 4.8668 45 1 0.9841 5.1698 4.3888 46 1 -0.2566 5.5640 5.6026 47 1 -0.2023 3.9377 4.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515178026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -31.168327 kcal Electronic energy + Delta-G solvation = -23969.793860 eV Core-core repulsion = 20766.608185 eV Total energy + Delta-G solvation = -3203.185675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.56443 -37.73935 -36.42827 -33.74906 -32.80458 -32.25096 -31.25074 -29.20992 -27.87199 -26.62631 -25.23724 -23.55762 -22.58487 -21.80909 -20.66636 -19.88282 -18.31239 -16.89333 -16.53008 -15.99633 -15.72915 -15.14969 -14.65040 -14.39275 -14.22961 -14.12093 -13.77592 -13.44210 -13.02125 -12.87948 -12.77735 -12.72719 -12.45417 -12.03217 -11.88539 -11.83605 -11.79534 -11.66270 -11.46571 -11.09885 -10.99239 -10.92323 -10.78439 -10.72718 -10.59517 -10.39675 -9.95920 -9.71423 -9.24184 -8.67090 -8.50472 -8.44345 -7.28220 -5.99971 -3.96378 2.96821 3.02908 3.27145 3.35290 3.36640 4.42734 4.43828 4.56077 4.63041 4.79028 4.89363 5.01061 5.13049 5.15050 5.26149 5.31647 5.36870 5.43888 5.49804 5.64511 5.66542 5.72147 5.72831 5.77042 5.78085 5.79103 5.83428 5.85543 5.90123 5.96535 5.97773 6.13606 6.32397 6.43349 6.46913 6.49318 6.72549 6.79384 6.83881 7.15237 7.55071 7.75862 7.93309 8.35267 8.58171 8.74660 9.14413 9.62434 11.13948 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.004653 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.218695 B = 6016.651289 C = 6262.465810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.191 3.809 4 H 0.027 0.973 5 C -0.487 4.487 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.867 3.133 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.654 5.654 14 C 0.040 3.960 15 C 0.516 3.484 16 O -0.512 6.512 17 N -0.613 5.613 18 C 0.132 3.868 19 H 0.093 0.907 20 C -0.165 4.165 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.131 4.131 24 C 0.145 3.855 25 H 0.066 0.934 26 C -0.135 4.135 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.334 0.666 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 8.236 5.790 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C 0.083 3.917 4 H 0.045 0.955 5 C -0.526 4.526 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.695 3.305 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.286 5.286 14 C -0.093 4.093 15 C 0.304 3.696 16 O -0.386 6.386 17 N -0.350 5.350 18 C 0.028 3.972 19 H 0.111 0.889 20 C -0.223 4.223 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.169 4.169 24 C 0.042 3.958 25 H 0.084 0.916 26 C -0.192 4.192 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.527 8.596 6.136 22.200 hybrid contribution -1.342 -0.545 -1.237 1.905 sum -20.869 8.051 4.899 22.898 Atomic orbital electron populations 1.21969 0.98686 1.00398 1.00253 1.22512 0.92517 1.01669 1.02157 1.19657 0.96887 0.88324 0.86839 0.95545 1.20969 0.88847 1.48729 0.94069 0.90227 1.24966 0.94719 0.95126 0.98495 1.69892 1.09020 1.51329 1.23753 0.87060 0.81280 0.78554 0.83613 1.20443 1.21497 1.18730 1.60488 1.34099 1.23482 1.10481 1.22031 0.94848 0.97577 0.94875 1.20932 0.78765 0.79154 0.90710 1.90730 1.48423 1.63907 1.35590 1.48288 1.31191 1.40133 1.15381 1.21367 0.89400 0.98362 0.88041 0.88857 1.22179 1.02715 0.96542 1.00896 1.21992 0.95760 1.00295 0.98646 1.21544 0.99185 0.99541 0.95504 1.22013 0.94683 1.02350 0.97881 1.21185 0.94828 0.94278 0.85495 0.91648 1.22209 0.99933 1.01921 0.95187 0.93801 0.93678 0.93767 0.91881 0.92251 0.92771 0.84802 0.88920 0.93728 0.91851 0.91521 0.92045 0.91487 0.90853 0.91927 0.91573 0.91563 0.91136 0.90679 0.94501 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.88 37.16 0.33 -2.23 16 2 C -0.15 -3.05 4.85 -26.73 -0.13 -3.18 16 3 C 0.19 4.40 1.76 -68.86 -0.12 4.28 16 4 H 0.03 0.61 5.35 -51.93 -0.28 0.34 16 5 C -0.49 -13.83 9.20 -34.44 -0.32 -14.15 16 6 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 9 Si 0.87 21.07 26.18 -169.99 -4.45 16.62 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -5.95 6.04 56.52 0.34 -5.61 16 13 N -0.65 -13.85 5.61 -109.22 -0.61 -14.46 16 14 C 0.04 0.68 4.04 -4.98 -0.02 0.66 16 15 C 0.52 8.56 7.66 -10.98 -0.08 8.48 16 16 O -0.51 -10.05 11.71 5.56 0.07 -9.98 16 17 N -0.61 -7.89 2.68 -157.49 -0.42 -8.31 16 18 C 0.13 1.34 3.12 -67.38 -0.21 1.13 16 19 H 0.09 0.97 5.96 -51.93 -0.31 0.66 16 20 C -0.17 -1.49 9.03 37.15 0.34 -1.15 16 21 C -0.13 -1.06 5.58 -26.38 -0.15 -1.21 16 22 C -0.12 -0.93 5.68 -26.69 -0.15 -1.08 16 23 C -0.13 -1.20 5.37 -26.61 -0.14 -1.34 16 24 C 0.15 1.68 3.07 -67.60 -0.21 1.48 16 25 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 26 C -0.14 -1.82 7.59 37.16 0.28 -1.54 16 27 H 0.04 0.67 6.50 -51.93 -0.34 0.33 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.37 6.56 -51.93 -0.34 1.03 16 31 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.33 6.85 7.75 -39.29 -0.30 6.55 16 34 H 0.09 1.60 7.96 -51.93 -0.41 1.19 16 35 H 0.05 0.68 5.59 -51.93 -0.29 0.39 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 5.71 -51.93 -0.30 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 6.49 -51.93 -0.34 0.14 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.21 6.75 -51.93 -0.35 0.86 16 46 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -31.72 346.35 -8.37 -40.09 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.26 Total: 5.89 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.68 Total: -8.00 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.26 Total: -49.84 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.45 Total: 16.62 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.72 -8.37 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515178026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.917 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds