Wall clock time and date at job start Tue Mar 31 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47035 * 2 1 4 4 H 1.09003 * 109.46774 * 175.68270 * 3 2 1 5 5 C 1.50703 * 109.47178 * 55.68831 * 3 2 1 6 6 H 1.07998 * 120.00193 * 240.00305 * 5 3 2 7 7 C 1.37881 * 119.99938 * 59.99800 * 5 3 2 8 8 N 1.31519 * 119.99658 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00136 * 359.97438 * 7 5 3 10 10 H 1.48490 * 109.47350 * 270.00271 * 9 7 5 11 11 H 1.48509 * 109.46902 * 30.00428 * 9 7 5 12 12 H 1.48496 * 109.47043 * 149.99673 * 9 7 5 13 13 N 1.46892 * 109.47248 * 295.68631 * 3 2 1 14 14 C 1.46896 * 111.00207 * 279.10720 * 13 3 2 15 15 C 1.50706 * 109.47485 * 174.92676 * 14 13 3 16 16 O 1.21276 * 119.99641 * 4.82738 * 15 14 13 17 17 N 1.34775 * 120.00168 * 184.82132 * 15 14 13 18 18 C 1.46922 * 120.63155 * 185.29539 * 17 15 14 19 19 H 1.09001 * 109.58583 * 246.20924 * 18 17 15 20 20 C 1.52999 * 109.58437 * 6.62875 * 18 17 15 21 21 C 1.53622 * 108.54591 * 126.36848 * 18 17 15 22 22 C 1.53039 * 109.23878 * 54.85700 * 21 18 17 23 23 C 1.53043 * 109.54071 * 298.51478 * 22 21 18 24 24 C 1.46925 * 120.63021 * 5.57706 * 17 15 14 25 25 H 1.08999 * 109.58655 * 353.37428 * 24 17 15 26 26 C 1.53003 * 109.58779 * 113.65278 * 24 17 15 27 27 H 1.09001 * 109.47158 * 304.79655 * 1 2 3 28 28 H 1.09003 * 109.47249 * 64.79098 * 1 2 3 29 29 H 1.08993 * 109.47379 * 184.79412 * 1 2 3 30 30 H 1.08994 * 109.47240 * 240.00268 * 2 1 3 31 31 H 1.09002 * 109.47146 * 119.99615 * 2 1 3 32 32 H 0.97003 * 119.99674 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00324 * 155.15082 * 13 3 2 34 34 H 1.08997 * 109.47137 * 294.92405 * 14 13 3 35 35 H 1.09002 * 109.47446 * 54.92918 * 14 13 3 36 36 H 1.08998 * 109.47337 * 52.53615 * 20 18 17 37 37 H 1.09002 * 109.47046 * 172.53259 * 20 18 17 38 38 H 1.09003 * 109.47467 * 292.53485 * 20 18 17 39 39 H 1.08991 * 109.63490 * 294.86873 * 21 18 17 40 40 H 1.08996 * 109.43299 * 174.72191 * 21 18 17 41 41 H 1.08994 * 109.46035 * 178.48831 * 22 21 18 42 42 H 1.09006 * 109.46047 * 58.53086 * 22 21 18 43 43 H 1.09004 * 109.49295 * 301.41334 * 23 22 21 44 44 H 1.08999 * 109.49907 * 181.32100 * 23 22 21 45 45 H 1.09003 * 109.46901 * 60.00020 * 26 24 17 46 46 H 1.08996 * 109.47206 * 179.97438 * 26 24 17 47 47 H 1.09002 * 109.46815 * 300.00207 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0774 5 6 1.4523 2.1831 1.1736 6 1 0.8407 3.0579 1.0088 7 6 1.6954 1.7439 2.4578 8 7 1.1821 2.3899 3.4819 9 14 2.7525 0.2304 2.7428 10 1 1.8914 -0.9792 2.7578 11 1 3.7528 0.1126 1.6515 12 1 3.4539 0.3549 4.0458 13 7 1.6373 2.1043 -1.2480 14 6 2.5456 1.7522 -2.3475 15 6 2.0319 2.3467 -3.6336 16 8 1.0595 3.0712 -3.6207 17 7 2.6532 2.0732 -4.7979 18 6 2.2370 2.7347 -6.0419 19 1 1.8125 1.9976 -6.7234 20 6 1.1929 3.8080 -5.7275 21 6 3.4706 3.3864 -6.6851 22 6 4.5607 2.3284 -6.8706 23 6 4.9685 1.7688 -5.5058 24 6 3.7556 1.1031 -4.8482 25 1 4.0140 0.7908 -3.8364 26 6 3.3288 -0.1162 -5.6681 27 1 -0.3633 0.5865 0.8439 28 1 -0.3634 0.4377 -0.9298 29 1 -0.3634 -1.0240 0.0859 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3534 2.0811 4.3854 33 1 1.5868 3.1048 -1.1270 34 1 3.5401 2.1457 -2.1372 35 1 2.5967 0.6677 -2.4435 36 1 1.5754 4.4708 -4.9514 37 1 0.9833 4.3857 -6.6278 38 1 0.2761 3.3321 -5.3795 39 1 3.8423 4.1825 -6.0403 40 1 3.1973 3.8010 -7.6554 41 1 5.4279 2.7810 -7.3514 42 1 4.1800 1.5203 -7.4953 43 1 5.3262 2.5803 -4.8720 44 1 5.7613 1.0323 -5.6367 45 1 3.0757 0.1975 -6.6808 46 1 4.1480 -0.8342 -5.7046 47 1 2.4589 -0.5801 -5.2032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515178027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:55 Heat of formation + Delta-G solvation = -26.822563 kcal Electronic energy + Delta-G solvation = -23918.615267 eV Core-core repulsion = 20715.618039 eV Total energy + Delta-G solvation = -3202.997229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58759 -37.74227 -36.32972 -33.79664 -32.83515 -32.37920 -31.18499 -29.24080 -27.39886 -26.65016 -25.08355 -23.56791 -23.13311 -21.95642 -20.72448 -19.27262 -18.36645 -16.93095 -16.33921 -16.09073 -15.70758 -15.25824 -14.86194 -14.27595 -14.20794 -13.73678 -13.66333 -13.45403 -13.28698 -12.99483 -12.85258 -12.69283 -12.59468 -12.11510 -11.94108 -11.85824 -11.74932 -11.58341 -11.13522 -11.04749 -10.98369 -10.77575 -10.63891 -10.59474 -10.55603 -10.19044 -10.02734 -9.32679 -8.98318 -8.77084 -8.55444 -8.48594 -7.45922 -6.08007 -4.06331 2.93302 2.99285 3.27328 3.34605 3.37619 4.39008 4.40817 4.54309 4.61454 4.76356 4.87506 4.98056 5.11294 5.18784 5.23345 5.28188 5.30204 5.41029 5.47205 5.64723 5.67306 5.69258 5.70008 5.74228 5.76085 5.82560 5.86966 5.94811 6.09656 6.14959 6.20674 6.28569 6.44240 6.47877 6.68375 6.77659 6.90946 7.13931 7.21155 7.51698 7.54246 7.63958 7.90737 8.34032 8.52657 8.63113 8.98636 9.53778 11.04901 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.004372 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.642732 B = 6403.352640 C = 6773.848985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.187 3.813 4 H -0.002 1.002 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.298 1.298 13 N -0.658 5.658 14 C 0.039 3.961 15 C 0.517 3.483 16 O -0.513 6.513 17 N -0.613 5.613 18 C 0.146 3.854 19 H 0.066 0.934 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.130 4.130 24 C 0.132 3.868 25 H 0.094 0.906 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.348 0.652 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -3.394 -21.297 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.016 0.984 5 C -0.548 4.548 6 H 0.099 0.901 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.226 1.226 13 N -0.290 5.290 14 C -0.094 4.094 15 C 0.306 3.694 16 O -0.387 6.387 17 N -0.350 5.350 18 C 0.043 3.957 19 H 0.084 0.916 20 C -0.194 4.194 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.168 4.168 24 C 0.028 3.972 25 H 0.112 0.888 26 C -0.222 4.222 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.168 0.832 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.162 -3.451 -21.219 22.659 hybrid contribution 1.535 -0.530 0.477 1.693 sum 8.697 -3.981 -20.742 22.841 Atomic orbital electron populations 1.21506 0.95350 0.98299 1.03265 1.21756 0.97658 0.98033 0.97646 1.19610 0.93385 0.91639 0.87584 0.98433 1.20955 1.32058 1.13215 0.88537 0.90143 1.24875 0.95361 0.96628 0.95970 1.69891 1.44711 1.40225 0.98683 0.86884 0.80981 0.83879 0.76659 1.20341 1.19524 1.22550 1.60187 1.49106 1.15137 1.04614 1.21894 0.95435 1.01121 0.90978 1.20874 0.82983 0.80855 0.84698 1.90725 1.25288 1.36658 1.86075 1.48288 1.35640 1.43277 1.07776 1.21260 0.94493 0.94526 0.85460 0.91649 1.22183 0.99514 0.97906 0.99788 1.22087 0.95617 0.98358 1.00894 1.21542 0.98555 0.98656 0.97004 1.21926 0.97107 1.00735 0.97040 1.21276 0.86459 0.88633 1.00799 0.88811 1.22173 1.02100 0.97216 1.00715 0.90956 0.92724 0.96187 0.95148 0.94139 0.92609 0.83203 0.93479 0.89251 0.91457 0.94313 0.90334 0.91490 0.91119 0.91877 0.91618 0.91375 0.90804 0.92067 0.91495 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.53 37.16 0.35 -2.43 16 2 C -0.11 -2.49 5.23 -26.73 -0.14 -2.63 16 3 C 0.19 4.36 1.88 -68.87 -0.13 4.23 16 4 H 0.00 -0.04 6.98 -51.93 -0.36 -0.40 16 5 C -0.51 -14.05 7.63 -34.44 -0.26 -14.31 16 6 H 0.08 2.44 7.93 -52.49 -0.42 2.02 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.89 21.79 24.33 -169.99 -4.14 17.65 16 10 H -0.28 -6.69 6.91 56.52 0.39 -6.30 16 11 H -0.27 -6.33 6.53 56.52 0.37 -5.97 16 12 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 13 N -0.66 -13.78 5.37 -109.22 -0.59 -14.36 16 14 C 0.04 0.65 4.38 -4.97 -0.02 0.63 16 15 C 0.52 8.34 7.55 -10.98 -0.08 8.26 16 16 O -0.51 -9.82 11.83 5.56 0.07 -9.75 16 17 N -0.61 -7.63 2.67 -157.48 -0.42 -8.05 16 18 C 0.15 1.63 3.10 -67.38 -0.21 1.42 16 19 H 0.07 0.69 7.49 -51.93 -0.39 0.30 16 20 C -0.14 -1.78 7.62 37.16 0.28 -1.50 16 21 C -0.13 -1.18 5.40 -26.39 -0.14 -1.32 16 22 C -0.12 -0.91 5.68 -26.69 -0.15 -1.06 16 23 C -0.13 -1.05 5.56 -26.61 -0.15 -1.20 16 24 C 0.13 1.29 3.09 -67.60 -0.21 1.09 16 25 H 0.09 0.94 5.91 -51.93 -0.31 0.64 16 26 C -0.16 -1.38 9.03 37.16 0.34 -1.05 16 27 H 0.07 1.78 6.91 -51.93 -0.36 1.42 16 28 H 0.05 1.18 7.87 -51.93 -0.41 0.77 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.59 7.03 -51.93 -0.37 0.22 16 31 H 0.04 0.93 3.39 -51.93 -0.18 0.76 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.35 7.67 8.15 -39.29 -0.32 7.35 16 34 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.09 1.40 6.31 -51.93 -0.33 1.07 16 36 H 0.07 1.02 6.82 -51.93 -0.35 0.66 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.46 6.50 -51.93 -0.34 0.12 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.49 5.73 -51.93 -0.30 0.19 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -30.61 343.18 -7.92 -38.54 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.17 Total: 5.06 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.62 Total: -7.88 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.23 Total: -48.79 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.61 -7.92 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515178027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.712 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds