Wall clock time and date at job start Tue Mar 31 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46881 * 2 1 4 4 H 1.09001 * 109.47278 * 181.79922 * 3 2 1 5 5 C 1.50695 * 109.47356 * 301.79913 * 3 2 1 6 6 H 1.08007 * 119.99793 * 118.28646 * 5 3 2 7 7 C 1.37871 * 120.00364 * 298.29258 * 5 3 2 8 8 N 1.31522 * 119.99511 * 349.65448 * 7 5 3 9 9 Si 1.86794 * 120.00595 * 169.65549 * 7 5 3 10 10 H 1.48505 * 109.47154 * 59.99533 * 9 7 5 11 11 H 1.48501 * 109.47568 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46954 * 300.00122 * 9 7 5 13 13 N 1.46908 * 109.46723 * 61.80134 * 3 2 1 14 14 C 1.46894 * 111.00080 * 80.43629 * 13 3 2 15 15 C 1.50699 * 109.47345 * 185.02766 * 14 13 3 16 16 O 1.21288 * 119.99537 * 348.18772 * 15 14 13 17 17 N 1.34775 * 120.00286 * 168.18866 * 15 14 13 18 18 C 1.46928 * 120.62839 * 199.76101 * 17 15 14 19 19 H 1.09006 * 109.58210 * 113.79920 * 18 17 15 20 20 C 1.52992 * 109.58655 * 353.51664 * 18 17 15 21 21 C 1.53194 * 108.77482 * 233.58172 * 18 17 15 22 22 C 1.53037 * 109.31326 * 305.36819 * 21 18 17 23 23 C 1.53040 * 109.53734 * 61.36649 * 22 21 18 24 24 C 1.46923 * 120.63022 * 19.48261 * 17 15 14 25 25 H 1.09007 * 109.58757 * 246.20429 * 24 17 15 26 26 C 1.53000 * 109.58921 * 6.62766 * 24 17 15 27 27 H 1.08999 * 109.46925 * 185.07638 * 1 2 3 28 28 H 1.08997 * 109.47265 * 305.07689 * 1 2 3 29 29 H 1.08999 * 109.47347 * 65.08001 * 1 2 3 30 30 H 1.08994 * 109.47242 * 240.00790 * 2 1 3 31 31 H 1.08999 * 109.47450 * 119.99778 * 2 1 3 32 32 H 0.96991 * 120.00250 * 2.97214 * 8 7 5 33 33 H 1.00899 * 110.99518 * 204.38889 * 13 3 2 34 34 H 1.09000 * 109.47638 * 305.02892 * 14 13 3 35 35 H 1.09008 * 109.47335 * 65.03025 * 14 13 3 36 36 H 1.09002 * 109.47698 * 63.76695 * 20 18 17 37 37 H 1.09004 * 109.46960 * 183.77004 * 20 18 17 38 38 H 1.08999 * 109.47083 * 303.76175 * 20 18 17 39 39 H 1.09002 * 109.49196 * 65.32043 * 21 18 17 40 40 H 1.08997 * 109.49564 * 185.41833 * 21 18 17 41 41 H 1.09006 * 109.46204 * 181.38266 * 22 21 18 42 42 H 1.08996 * 109.46357 * 301.34602 * 22 21 18 43 43 H 1.08997 * 109.49905 * 58.58925 * 23 22 21 44 44 H 1.09009 * 109.49560 * 178.68158 * 23 22 21 45 45 H 1.09006 * 109.47172 * 51.06649 * 26 24 17 46 46 H 1.09000 * 109.47555 * 171.07234 * 26 24 17 47 47 H 1.09001 * 109.47137 * 291.07165 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1295 1.4428 -0.0323 5 6 1.5015 2.1658 -1.2075 6 1 0.8613 3.0263 -1.0806 7 6 1.8261 1.7289 -2.4742 8 7 2.7596 0.8167 -2.6361 9 14 0.9401 2.4325 -3.9606 10 1 1.1608 3.8999 -4.0196 11 1 1.4698 1.8027 -5.1967 12 1 -0.5143 2.1549 -3.8471 13 7 1.5860 2.1223 1.2207 14 6 2.4416 1.7781 2.3641 15 6 1.8754 2.3925 3.6182 16 8 0.9926 3.2208 3.5425 17 7 2.3499 2.0217 4.8239 18 6 1.5622 2.2544 6.0422 19 1 1.2636 1.2984 6.4724 20 6 0.3167 3.0738 5.6989 21 6 2.4252 3.0230 7.0480 22 6 3.7318 2.2608 7.2802 23 6 4.5037 2.1551 5.9630 24 6 3.6620 1.3716 4.9444 25 1 3.5311 0.3451 5.2868 26 6 4.3635 1.3762 3.5847 27 1 -0.3633 -1.0236 0.0909 28 1 -0.3633 0.5906 0.8410 29 1 -0.3634 0.4330 -0.9320 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1895 0.4201 -1.8624 33 1 1.5481 3.1215 1.0853 34 1 2.4803 0.6946 2.4758 35 1 3.4476 2.1619 2.1937 36 1 -0.3216 2.5005 5.0266 37 1 -0.2311 3.3024 6.6132 38 1 0.6154 4.0025 5.2126 39 1 2.6475 4.0145 6.6536 40 1 1.8870 3.1182 7.9910 41 1 4.3371 2.7929 8.0141 42 1 3.5078 1.2606 7.6511 43 1 4.7066 3.1548 5.5789 44 1 5.4450 1.6326 6.1339 45 1 4.3567 2.3866 3.1757 46 1 5.3933 1.0401 3.7059 47 1 3.8401 0.7052 2.9035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515178028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:59 Heat of formation + Delta-G solvation = 6.867505 kcal Electronic energy + Delta-G solvation = -24084.697297 eV Core-core repulsion = 20883.160979 eV Total energy + Delta-G solvation = -3201.536318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75131 -37.49055 -36.46909 -34.69353 -32.80668 -32.38085 -30.63367 -29.03856 -27.90044 -26.01084 -24.81563 -23.51267 -22.44264 -21.67176 -21.08584 -19.20738 -19.09200 -17.25645 -16.36372 -16.03215 -15.43965 -14.70741 -14.57597 -14.29178 -14.23669 -13.99400 -13.69760 -13.65532 -13.11361 -12.94009 -12.87895 -12.38864 -12.14960 -11.98719 -11.87109 -11.62280 -11.46575 -11.25548 -11.09353 -11.01425 -10.83943 -10.75124 -10.69574 -10.37514 -10.07002 -10.02179 -9.94780 -9.69216 -8.83736 -8.55333 -8.43996 -8.20362 -7.24434 -6.33866 -4.03015 2.88954 3.03389 3.46071 3.49115 3.66676 4.46111 4.52345 4.54588 4.61560 4.77145 4.92072 5.03160 5.09740 5.20032 5.31269 5.35293 5.41701 5.43279 5.54805 5.62801 5.64581 5.73360 5.75624 5.78115 5.86442 5.87374 5.98839 6.06337 6.09966 6.25805 6.29185 6.44790 6.48561 6.62210 6.81107 6.95205 7.03312 7.27636 7.44835 7.56673 7.59514 7.90635 8.15566 8.48427 8.57554 8.62383 8.89849 9.66212 11.03053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028504 B = 0.004185 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.089834 B = 6689.460296 C = 7045.762810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.208 3.792 4 H -0.012 1.012 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.065 2.935 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.014 3.986 15 C 0.524 3.476 16 O -0.515 6.515 17 N -0.623 5.623 18 C 0.147 3.853 19 H 0.065 0.935 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.130 4.130 24 C 0.145 3.855 25 H 0.072 0.928 26 C -0.198 4.198 27 H 0.016 0.984 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.016 0.984 32 H 0.270 0.730 33 H 0.342 0.658 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 0.271 19.141 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.100 3.900 4 H 0.006 0.994 5 C -0.630 4.630 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.117 4.117 15 C 0.313 3.687 16 O -0.389 6.389 17 N -0.361 5.361 18 C 0.044 3.956 19 H 0.083 0.917 20 C -0.201 4.201 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.168 4.168 24 C 0.042 3.958 25 H 0.090 0.910 26 C -0.254 4.254 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.599 0.202 17.552 17.744 hybrid contribution 0.956 0.347 1.666 1.952 sum 3.555 0.549 19.218 19.551 Atomic orbital electron populations 1.21424 0.96385 0.97484 1.02427 1.21528 0.96526 0.98289 0.98309 1.19222 0.92435 0.91506 0.86861 0.99415 1.21899 1.33943 1.15695 0.91424 0.92736 1.25677 0.95539 0.96226 1.00578 1.70821 1.21929 1.27611 1.34335 0.83593 0.75827 0.75592 0.75618 1.21579 1.20936 1.21334 1.60269 1.51934 1.14291 1.03867 1.23474 0.96817 1.00684 0.90764 1.20958 0.82199 0.81170 0.84390 1.90667 1.31251 1.30590 1.86426 1.48266 1.19081 1.62522 1.06256 1.21170 0.91559 0.98199 0.84646 0.91699 1.22254 0.95600 1.02422 0.99868 1.22004 0.96191 0.99715 0.99028 1.21517 0.96424 1.00642 0.97104 1.22059 0.98269 1.01211 0.95271 1.21190 0.82448 0.95989 0.96195 0.90972 1.23428 1.01351 1.03873 0.96740 0.96534 0.92847 0.92441 0.92047 0.96487 0.91887 0.83879 0.88742 0.90604 0.91814 0.94000 0.89646 0.91466 0.91126 0.91805 0.91874 0.91422 0.90852 0.90710 0.91410 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.46 37.16 0.35 -2.37 16 2 C -0.11 -2.52 5.41 -26.73 -0.14 -2.67 16 3 C 0.21 5.08 1.93 -68.86 -0.13 4.95 16 4 H -0.01 -0.30 7.43 -51.93 -0.39 -0.68 16 5 C -0.59 -16.17 7.30 -34.44 -0.25 -16.42 16 6 H 0.05 1.53 7.73 -52.48 -0.41 1.12 16 7 C 0.02 0.68 5.18 -17.82 -0.09 0.58 16 8 N -0.91 -26.57 13.00 55.43 0.72 -25.85 16 9 Si 1.07 25.12 29.92 -169.99 -5.09 20.04 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.58 5.15 -109.21 -0.56 -15.14 16 14 C 0.01 0.25 3.56 -4.98 -0.02 0.23 16 15 C 0.52 8.83 7.04 -10.99 -0.08 8.76 16 16 O -0.51 -10.17 12.01 5.55 0.07 -10.10 16 17 N -0.62 -8.28 2.97 -157.48 -0.47 -8.75 16 18 C 0.15 1.75 3.48 -67.60 -0.24 1.52 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 20 C -0.14 -1.96 7.63 37.15 0.28 -1.68 16 21 C -0.13 -1.25 5.38 -26.61 -0.14 -1.39 16 22 C -0.12 -0.97 5.88 -26.69 -0.16 -1.12 16 23 C -0.13 -1.14 5.39 -26.39 -0.14 -1.28 16 24 C 0.15 1.53 3.48 -67.38 -0.23 1.30 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 C -0.20 -2.17 7.09 37.16 0.26 -1.91 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 29 H 0.06 1.41 7.36 -51.93 -0.38 1.02 16 30 H 0.06 1.56 6.10 -51.93 -0.32 1.24 16 31 H 0.02 0.35 7.06 -51.93 -0.37 -0.01 16 32 H 0.27 7.79 5.88 -40.82 -0.24 7.55 16 33 H 0.34 7.83 8.09 -39.29 -0.32 7.51 16 34 H 0.09 1.60 5.30 -51.93 -0.27 1.33 16 35 H 0.08 1.25 4.46 -51.92 -0.23 1.01 16 36 H 0.06 1.02 7.21 -51.93 -0.37 0.64 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.35 6.34 -51.93 -0.33 1.02 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.07 0.92 5.86 -51.93 -0.30 0.62 16 46 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 47 H 0.09 1.17 4.50 -51.93 -0.23 0.93 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -30.20 342.96 -8.89 -39.09 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.00 Total: 7.06 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.73 Total: -11.52 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.31 Total: -49.74 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.20 -8.89 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515178028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.958 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds