Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47473 * 2 1 4 4 N 1.46906 * 109.47378 * 179.97438 * 3 2 1 5 5 C 1.46897 * 110.99771 * 293.95638 * 4 3 2 6 6 C 1.46898 * 110.99890 * 170.00285 * 4 3 2 7 7 C 1.50700 * 109.47068 * 190.00323 * 6 4 3 8 8 O 1.21286 * 119.99792 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00317 * 180.02562 * 7 6 4 10 10 C 1.46924 * 120.62798 * 359.71589 * 9 7 6 11 11 C 1.53619 * 108.54568 * 126.37170 * 10 9 7 12 12 C 1.53042 * 109.24108 * 54.85051 * 11 10 9 13 13 C 1.53004 * 109.45870 * 178.49212 * 12 11 10 14 14 C 1.50692 * 109.47260 * 295.07222 * 13 12 11 15 15 H 1.08007 * 120.00085 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00310 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99524 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00333 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47276 * 59.99974 * 18 16 14 20 20 H 1.48505 * 109.47235 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46946 * 299.99757 * 18 16 14 22 22 C 1.53040 * 109.54107 * 298.51656 * 12 11 10 23 23 C 1.46922 * 120.63075 * 179.97438 * 9 7 6 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47261 * 300.00171 * 1 2 3 26 26 H 1.09000 * 109.46870 * 59.99782 * 1 2 3 27 27 H 1.09004 * 109.47108 * 240.00112 * 2 1 3 28 28 H 1.09004 * 109.47368 * 120.00213 * 2 1 3 29 29 H 1.09004 * 109.46862 * 59.99962 * 3 2 1 30 30 H 1.09000 * 109.47250 * 299.99985 * 3 2 1 31 31 H 1.08997 * 109.47293 * 60.00221 * 5 4 3 32 32 H 1.09000 * 109.46769 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47106 * 299.99134 * 5 4 3 34 34 H 1.09004 * 109.47244 * 310.00126 * 6 4 3 35 35 H 1.08994 * 109.47665 * 70.00225 * 6 4 3 36 36 H 1.09000 * 109.58495 * 246.20810 * 10 9 7 37 37 H 1.09000 * 109.58760 * 6.63023 * 10 9 7 38 38 H 1.09003 * 109.63095 * 294.86944 * 11 10 9 39 39 H 1.09000 * 109.43623 * 174.72549 * 11 10 9 40 40 H 1.09007 * 109.44551 * 58.53167 * 12 11 10 41 41 H 1.08995 * 109.46944 * 55.07457 * 13 12 11 42 42 H 1.08998 * 109.46776 * 175.07188 * 13 12 11 43 43 H 0.96995 * 119.99699 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.49576 * 301.40900 * 22 12 11 45 45 H 1.08996 * 109.52311 * 181.32862 * 22 12 11 46 46 H 1.08995 * 109.58617 * 353.37222 * 23 9 7 47 47 H 1.09004 * 109.58289 * 113.65386 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0349 0.8857 1.2542 6 6 4.0356 2.7929 -0.2374 7 6 5.5220 2.7181 -0.4742 8 8 6.0871 1.6453 -0.4468 9 7 6.2236 3.8433 -0.7154 10 6 5.5523 5.1496 -0.7567 11 6 6.2699 6.0987 0.2149 12 6 7.7592 6.1464 -0.1343 13 6 8.4725 7.1194 0.8067 14 6 7.9602 8.5163 0.5675 15 1 7.2021 8.6926 -0.1813 16 6 8.4602 9.5695 1.3036 17 7 9.3845 9.3549 2.2143 18 14 7.8247 11.3009 1.0075 19 1 6.3634 11.3431 1.2677 20 1 8.5180 12.2454 1.9200 21 1 8.0882 11.6907 -0.4010 22 6 8.3662 4.7501 0.0203 23 6 7.6732 3.7864 -0.9475 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6854 -0.1401 1.3711 32 1 5.1245 0.8971 1.2279 33 1 3.6852 1.4867 2.0936 34 1 3.5495 3.2234 -1.1130 35 1 3.8374 3.4188 0.6326 36 1 5.5999 5.5530 -1.7682 37 1 4.5110 5.0350 -0.4555 38 1 6.1472 5.7386 1.2363 39 1 5.8434 7.0980 0.1272 40 1 7.8799 6.4829 -1.1641 41 1 8.2783 6.8333 1.8404 42 1 9.5452 7.0882 0.6165 43 1 9.7365 10.0959 2.7319 44 1 8.2237 4.4027 1.0435 45 1 9.4318 4.7891 -0.2057 46 1 8.0318 2.7721 -0.7723 47 1 7.8904 4.0784 -1.9750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516972838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = -51.188753 kcal Electronic energy + Delta-G solvation = -22797.189538 eV Core-core repulsion = 19593.135712 eV Total energy + Delta-G solvation = -3204.053826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15216 -38.02903 -36.86290 -34.01226 -33.41563 -32.18805 -30.89308 -28.73343 -27.62512 -27.14304 -24.68689 -23.45048 -22.75597 -21.61409 -20.93921 -19.75646 -18.56951 -17.14819 -16.31390 -16.05567 -15.84081 -15.47927 -15.04685 -14.55943 -14.38413 -14.18002 -13.70454 -13.60954 -13.24120 -13.11253 -12.81536 -12.73039 -12.33466 -12.20068 -12.06066 -11.86665 -11.78381 -11.48832 -11.30686 -11.20444 -11.01382 -10.83582 -10.78921 -10.70681 -10.46771 -10.14460 -9.73671 -9.52729 -9.27991 -9.00462 -8.47826 -8.38176 -8.29850 -6.02442 -4.04763 2.76208 3.02851 3.29593 3.35137 3.36335 3.81691 4.42515 4.56271 4.66194 4.78189 5.00464 5.03985 5.16261 5.18413 5.23349 5.29951 5.32181 5.39762 5.42917 5.46923 5.51400 5.54758 5.56339 5.66311 5.74089 5.74784 5.89003 5.97489 5.98691 6.06289 6.12351 6.36549 6.36889 6.49530 6.64687 6.80132 6.90024 6.94446 6.96934 7.08214 7.60018 7.64077 7.78796 7.97137 8.35453 8.39221 9.01599 9.59052 11.08769 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.003153 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.636208 B = 8879.617767 C = 9518.677729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.526 5.526 5 C 0.017 3.983 6 C 0.037 3.963 7 C 0.515 3.485 8 O -0.534 6.534 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.114 3.886 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 -14.415 -4.846 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.250 5.250 5 C -0.131 4.131 6 C -0.094 4.094 7 C 0.303 3.697 8 O -0.411 6.411 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.008 4.008 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.815 -15.196 -5.079 21.156 hybrid contribution -0.567 1.787 0.615 1.973 sum -14.382 -13.410 -4.465 20.164 Atomic orbital electron populations 1.21740 0.95633 1.01751 1.01760 1.21526 0.95208 0.96262 1.02898 1.22216 0.86760 0.97578 1.00803 1.61666 1.07037 1.20057 1.36254 1.22593 1.02835 0.99445 0.88208 1.22011 0.93533 0.91290 1.02607 1.20397 0.89005 0.83689 0.76656 1.90632 1.71303 1.28081 1.51054 1.48187 1.08864 1.06776 1.70333 1.22031 0.96110 0.83041 1.00798 1.21975 0.96777 0.99032 0.97872 1.21189 0.93969 0.93833 1.00925 1.19117 0.95282 0.92617 0.93904 1.21196 1.22126 0.92351 1.19892 0.92658 1.25029 0.95130 0.99041 0.95285 1.69954 1.28363 1.31740 1.23394 0.86701 0.78975 0.84508 0.78053 1.20291 1.21367 1.20289 1.22012 0.99645 0.96015 0.99026 1.21630 0.79017 1.01153 0.99050 0.92544 0.92874 0.92656 0.91039 0.91872 0.94814 0.90786 0.91299 0.89361 0.96178 0.88071 0.91811 0.91379 0.90737 0.92342 0.89728 0.92321 0.96691 0.96584 0.92971 0.92171 0.91149 0.89715 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.99 5.86 -26.74 -0.16 -1.15 16 3 C 0.05 0.49 4.96 -3.82 -0.02 0.47 16 4 N -0.53 -6.20 4.50 -244.38 -1.10 -7.30 16 5 C 0.02 0.20 8.96 60.06 0.54 0.74 16 6 C 0.04 0.42 3.79 -4.98 -0.02 0.40 16 7 C 0.52 7.62 7.39 -10.98 -0.08 7.54 16 8 O -0.53 -9.51 13.74 5.55 0.08 -9.43 16 9 N -0.61 -8.76 2.97 -172.53 -0.51 -9.27 16 10 C 0.10 1.34 6.37 -3.49 -0.02 1.32 16 11 C -0.12 -1.97 5.21 -26.39 -0.14 -2.11 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.84 8.39 -34.44 -0.29 -14.13 16 15 H 0.06 1.41 7.06 -52.48 -0.37 1.04 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.13 -2.15 5.36 -26.63 -0.14 -2.30 16 23 C 0.11 1.70 6.43 -3.73 -0.02 1.67 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 29 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 30 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 31 H 0.07 0.72 6.47 -51.93 -0.34 0.39 16 32 H 0.09 1.26 5.82 -51.93 -0.30 0.96 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.98 7.72 -51.93 -0.40 0.58 16 35 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.49 6.91 -51.93 -0.36 1.14 16 40 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -30.82 361.35 -9.41 -40.23 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.64 Total: -2.18 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.40 Total: -7.84 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.88 Total: -42.25 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.82 -9.41 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516972838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.955 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds